Prupe.8G197900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015343
Physical Location & Seq
Reverse (-)
18875508 .. 18876782
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G197900.1

Sequence Viewer

Length: 1275 bp
ATGTCTGAATTTTCTTTCTCATCAAACACTTCCAAGAAGACTAAATTCTCTAGTCTTCTTCTTGCTGACTTCTTCAATGTTTGTTTCTTCATTTTGTCACACCCTCTCTACTTCTCCTACTTCATTTTCTTCTCACCATACCTCCTCAAGCTGCTTTCTTTTCTGTCTCCTCTCTTCATCACCACTGCGCTTCTTGTCCTGGCTTACCTCACTGTCTCTCCCCCACTTGTCCAAGACAACGTTGCGAATTCCGAATTGTCCAGCATCAAAGTTGGTTGTCTTGTGACCACTTACCAAACTGTTTTGGAAAGATTGCAGAAGTCTAAGGCAGATGACAGTGATGGTGATGATCATGAGCACGAGGAGTTTCGATCTTTCGAAGAGCTTGAAGTGTATAAGATTGTGTTTGATACGTCTAGTTTCGAGATTAGCGAGAACCCAGTTGAAGAAATCTGCTCACAAGTCTCTGAAGCACCAGTTGATGATGTGTCCAGCCATGAAGGCAATGCTACCTCTGCTCCACTGGAAGCTGCAAGTGATATTTTAGATGAAAACCCGGCTGAGGTTATTGCTTGGCCAAGAGTGGAGACATTGGCAGCATTCTTTCAAGAGGAGAATTGGTCAAAAGATTTCAAGGAAGAGAAAGAAGTCAAGCCAGCAAGCACACTGTCCAATAAAGTTGATGAAGATGGAAAAGAAAAAAGGTCCATGAGAAGAGCATCCAAGGATTTGAGTAGCAAAACAAGTTTTTGTGAAGTGAGTGCTGATTATGATGAAGCTCAATTTACTTCCAAATCCATGTCAAATTCCCAAAGGCTAGGAGCAAATTTTGGAGAAGACAACATTAAAGTTATGGAGGACTCTCAAATGCTAATGGGTCCAAATCTTGGAAGTTTTGGTTCAATGAGGAAAGAGAAAGAGTGGAGGAGGACACTGGCTTGCAAGCTTTTTGAGGAGAGACATCACAATGTGGAAGGTGGAGGTGAGGGCATGGACATGCTTTGGGAGACATATGATGAGACAGAATCAATTAAAGCTACGAAAGGAAAAAGCAAGTCAAAGAAGGGCAAGAATGGAAAGGTTGAGGAGGAGGATGATGGAGAGGAAGAGGAAGATTTTGATGGGCAATTATGCTGCTTGCAGGCATTGAAATTTTCAGCAGGGAAGATGAATTTGGGCATGGGGAGGCCTAATCTTGTCAAGTTTTCCAAGGCCCTCAAAGGGTTTGGATGGTTGCACCATGTCACCAAGCATGGGAAGAAGGGGTACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

47.74

Weight (kDa)

4.99

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25130
fragaria_vesca FvH4_2g18490
malus_domestica MD05G1170600.v1.1 MD10G1158800.v1.1
prunus_persica Prupe.8G197900_v2.0.a1
pyrus_communis pycom05g15780
rosa_chinensis RchiOBHm_Chr6g0284001
rosa_laevigata RLG00000012779
rosa_multiflora Rmu_sc0003102.1_g000005 Rmu_ssc0000442.1_g000040
rosa_rugosa Rorug06G0159200
rosa_samantha Rh6AG272600 Rh6BG273200 Rh6CG274400 Rh6DG267600
rosa_wichuraiana Rw6G023470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1266
AccB1I GGYRCC 1 cut(s) 1266
AccB7I CCANNNNNTGG 1 cut(s) 887
AclI AACGTT 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 575
AcsI RAATTY 7 cut(s) 8, 44, 247, 805, 826, 1151, 1171
AcuI CTGAAG 1 cut(s) 489
AdeI CACNNNGTG 1 cut(s) 970
AfaI GTAC 1 cut(s) 1268
AfiI CCNNNNNNNGG 4 cut(s) 562, 887, 1221, 1254
AgsI TTSAA 7 cut(s) 76, 389, 446, 608, 634, 903, 1150
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 1157, 1189
AluBI AGCT 6 cut(s) 151, 385, 530, 779, 946, 1037
AluI AGCT 6 cut(s) 151, 385, 530, 779, 946, 1037
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 7 cut(s) 171, 220, 469, 581, 952, 1001, 1013
AoxI GGCC 3 cut(s) 575, 1187, 1212
ApeKI GCWGC 4 cut(s) 151, 530, 596, 1134
ApoI RAATTY 7 cut(s) 8, 44, 247, 805, 826, 1151, 1171
Asp718I GGTACC 1 cut(s) 1266
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 3 cut(s) 705, 878, 1213
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 5 cut(s) 126, 172, 356, 995, 1237
AsuII TTCGAA 1 cut(s) 378
AvaII GGWCC 2 cut(s) 705, 878
BalI TGGCCA 1 cut(s) 577
BanI GGYRCC 1 cut(s) 1266
BarI GAAGNNNNNNTAC 1 cut(s) 1250
BauI CACGAG 1 cut(s) 359
BbsI GAAGAC 3 cut(s) 44, 47, 843
Bbv12I GWGCWC 1 cut(s) 360
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 4 cut(s) 138, 517, 608, 1121
BccI CCATC 5 cut(s) 335, 683, 1091, 1115, 1224
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 7 cut(s) 171, 220, 469, 581, 952, 1001, 1013
BfaI CTAG 3 cut(s) 51, 417, 818
BglI GCCNNNNNGGC 1 cut(s) 501
BisI GCNGC 4 cut(s) 152, 531, 597, 1135
BlsI GCNGC 4 cut(s) 153, 532, 598, 1136
Bme1390I CCNGG 2 cut(s) 200, 557
Bme18I GGWCC 2 cut(s) 705, 878
BmgT120I GGNCC 3 cut(s) 705, 878, 1213
BmiI GGNNCC 2 cut(s) 879, 1268
BmrFI CCNGG 2 cut(s) 200, 557
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 273, 728
BmuI ACTGGG 1 cut(s) 434
BpiI GAAGAC 3 cut(s) 44, 47, 843
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 723, 1209
BsaXI ACNNNNNCTCC 8 cut(s) 126, 156, 202, 232, 502, 532, 605, 635
Bsc4I CCNNNNNNNGG 4 cut(s) 562, 887, 1221, 1254
Bse1I ACTGG 4 cut(s) 440, 476, 528, 939
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 723, 1209
BseGI GGATG 3 cut(s) 719, 1099, 1235
BseLI CCNNNNNNNGG 4 cut(s) 562, 887, 1221, 1254
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 4 cut(s) 440, 476, 528, 939
BseRI GAGGAG 8 cut(s) 134, 159, 377, 626, 940, 968, 1100, 1103
BseXI GCAGC 4 cut(s) 138, 517, 608, 1121
BshFI GGCC 3 cut(s) 577, 1189, 1214
BshNI GGYRCC 1 cut(s) 1266
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 557
BslI CCNNNNNNNGG 4 cut(s) 562, 887, 1221, 1254
BsmAI GTCTC 7 cut(s) 171, 220, 469, 581, 952, 1001, 1013
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 3 cut(s) 577, 1189, 1214
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 349, 371
BspANI GGCC 3 cut(s) 577, 1189, 1214
BspCNI CTCAG 1 cut(s) 553
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 879, 1268
BspQI GCTCTTC 2 cut(s) 375, 709
BspT104I TTCGAA 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 1266
BsrDI GCAATG 1 cut(s) 511
BsrI ACTGG 4 cut(s) 440, 476, 528, 939
BssECI CCNNGG 2 cut(s) 723, 1209
BssMI GATC 2 cut(s) 349, 371
BssSI CACGAG 1 cut(s) 359
BssT1I CCWWGG 2 cut(s) 723, 1209
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 4 cut(s) 214, 301, 338, 669
Bst6I CTCTTC 5 cut(s) 179, 375, 633, 709, 1101
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 6 cut(s) 657, 661, 940, 944, 1139, 1143
BstDEI CTNAG 2 cut(s) 324, 561
BstF5I GGATG 3 cut(s) 719, 1099, 1235
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 352, 374
BstMAI GTCTC 7 cut(s) 171, 220, 469, 581, 952, 1001, 1013
BstMBI GATC 2 cut(s) 349, 371
BstMWI GCNNNNNNNGC 2 cut(s) 501, 515
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 1000
BstSCI CCNGG 2 cut(s) 198, 555
BstV1I GCAGC 4 cut(s) 138, 517, 608, 1121
BstV2I GAAGAC 3 cut(s) 44, 47, 843
BsuRI GGCC 3 cut(s) 577, 1189, 1214
BtsCI GGATG 3 cut(s) 719, 1099, 1235
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 6 cut(s) 183, 210, 343, 521, 665, 932
Cac8I GCNNGC 6 cut(s) 657, 661, 940, 944, 1139, 1143
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 705, 878, 1213
Csp6I GTAC 1 cut(s) 1267
CviAII CATG 9 cut(s) 353, 497, 709, 799, 991, 997, 1180, 1241, 1253
CviQI GTAC 1 cut(s) 1267
DdeI CTNAG 2 cut(s) 324, 561
DpnI GATC 2 cut(s) 351, 373
DpnII GATC 2 cut(s) 349, 371
DraIII CACNNNGTG 1 cut(s) 970
EaeI YGGCCR 1 cut(s) 575
Eam1104I CTCTTC 5 cut(s) 179, 375, 633, 709, 1101
EarI CTCTTC 5 cut(s) 179, 375, 633, 709, 1101
Eco130I CCWWGG 2 cut(s) 723, 1209
Eco147I AGGCCT 1 cut(s) 1189
Eco47I GGWCC 2 cut(s) 705, 878
Eco57I CTGAAG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 1213
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 723, 1209
ErhI CCWWGG 2 cut(s) 723, 1209
FaeI CATG 9 cut(s) 356, 500, 712, 802, 994, 1000, 1183, 1244, 1256
FatI CATG 9 cut(s) 352, 496, 708, 798, 990, 996, 1179, 1240, 1252
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 152, 531, 597, 1135
FokI GGATG 3 cut(s) 706, 1106, 1242
Fsp4HI GCNGC 4 cut(s) 152, 531, 597, 1135
FspBI CTAG 3 cut(s) 51, 417, 818
GlaI GCGC 1 cut(s) 189
GluI GCNGC 4 cut(s) 152, 531, 597, 1135
HaeIII GGCC 3 cut(s) 577, 1189, 1214
HapII CCGG 1 cut(s) 557
HhaI GCGC 1 cut(s) 190
Hin1II CATG 9 cut(s) 356, 500, 712, 802, 994, 1000, 1183, 1244, 1256
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 2 cut(s) 860, 1025
HpaII CCGG 1 cut(s) 557
HphI GGTGA 5 cut(s) 126, 172, 356, 995, 1237
Hpy188I TCNGA 3 cut(s) 7, 253, 469
Hpy188III TCNNGA 3 cut(s) 353, 424, 608
HpyAV CCTTC 4 cut(s) 494, 968, 1057, 1255
HpyCH4III ACNGT 4 cut(s) 214, 301, 338, 669
HpyCH4IV ACGT 2 cut(s) 240, 413
HpyCH4V TGCA 5 cut(s) 316, 533, 942, 1141, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 515
HpyF3I CTNAG 2 cut(s) 324, 561
HpySE526I ACGT 2 cut(s) 240, 413
Hsp92II CATG 9 cut(s) 356, 500, 712, 802, 994, 1000, 1183, 1244, 1256
HspAI GCGC 1 cut(s) 188
KpnI GGTACC 1 cut(s) 1270
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 349, 371
LguI GCTCTTC 2 cut(s) 375, 709
LmnI GCTCC 2 cut(s) 523, 821
Lsp1109I GCAGC 4 cut(s) 138, 517, 608, 1121
LweI GCATC 2 cut(s) 273, 728
MaeI CTAG 3 cut(s) 51, 417, 818
MaeII ACGT 2 cut(s) 240, 413
MaeIII GTNAC 3 cut(s) 96, 283, 1243
MalI GATC 2 cut(s) 351, 373
MboI GATC 2 cut(s) 349, 371
MhlI GDGCHC 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 577
MluNI TGGCCA 1 cut(s) 577
MlyI GAGTC 1 cut(s) 854
Mox20I TGGCCA 1 cut(s) 577
MscI TGGCCA 1 cut(s) 577
MseI TTAA 2 cut(s) 846, 1032
MslI CAYNNNNRTG 2 cut(s) 966, 995
Msp20I TGGCCA 1 cut(s) 577
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 2 cut(s) 200, 557
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 501, 515
NciI CCSGG 1 cut(s) 557
NdeI CATATG 1 cut(s) 1012
NdeII GATC 2 cut(s) 349, 371
NlaIII CATG 9 cut(s) 356, 500, 712, 802, 994, 1000, 1183, 1244, 1256
NlaIV GGNNCC 2 cut(s) 879, 1268
NmuCI GTSAC 3 cut(s) 96, 283, 1243
NspI RCATGY 1 cut(s) 1000
NspV TTCGAA 1 cut(s) 378
PagI TCATGA 1 cut(s) 352
PceI AGGCCT 1 cut(s) 1189
PciSI GCTCTTC 2 cut(s) 375, 709
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 1025
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 4 cut(s) 153, 532, 598, 1136
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 879, 1268
PspPI GGNCC 3 cut(s) 705, 878, 1213
RsaI GTAC 1 cut(s) 1268
RsaNI GTAC 1 cut(s) 1267
RseI CAYNNNNRTG 2 cut(s) 966, 995
SapI GCTCTTC 2 cut(s) 375, 709
SaqAI TTAA 2 cut(s) 846, 1032
SatI GCNGC 4 cut(s) 152, 531, 597, 1135
Sau3AI GATC 2 cut(s) 349, 371
Sau96I GGNCC 3 cut(s) 705, 878, 1213
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 2 cut(s) 200, 557
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 2 cut(s) 273, 728
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 2 cut(s) 705, 878
SmiMI CAYNNNNRTG 2 cut(s) 966, 995
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 1189
SspMI CTAG 3 cut(s) 51, 417, 818
StuI AGGCCT 1 cut(s) 1189
StyD4I CCNGG 2 cut(s) 198, 555
StyI CCWWGG 2 cut(s) 723, 1209
TaaI ACNGT 4 cut(s) 214, 301, 338, 669
TaiI ACGT 2 cut(s) 243, 416
TaqI TCGA 3 cut(s) 370, 378, 423
TfiI GAWTC 1 cut(s) 1025
Tru1I TTAA 2 cut(s) 846, 1032
Tru9I TTAA 2 cut(s) 846, 1032
TscAI CASTG 6 cut(s) 190, 217, 343, 528, 672, 939
TseFI GTSAC 3 cut(s) 96, 283, 1243
TseI GCWGC 4 cut(s) 151, 530, 596, 1134
Tsp45I GTSAC 3 cut(s) 96, 283, 1243
TspDTI ATGAA 8 cut(s) 79, 112, 166, 513, 564, 699, 789, 1184
TspRI CASTG 6 cut(s) 190, 217, 343, 528, 672, 939
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 2 cut(s) 705, 878
XapI RAATTY 7 cut(s) 8, 44, 247, 805, 826, 1151, 1171
XceI RCATGY 1 cut(s) 1000
XspI CTAG 3 cut(s) 51, 417, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.