Rmu_ssc0000442.1_g000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000442.1
OG0015343
Physical Location & Seq
Reverse (-)
221800 .. 222417
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000442.1_g000040.1.cds

Sequence Viewer

Length: 618 bp
atgtctgaactatctttctcctccaagaactcaaatttctctagcattgatctccttgctgacttcttccatgtctgtttcttcattctgtcccatcctctttacttttcttacttcatatttttctcaccatacctcctcaagcttctgtctttcctatcccctctgttcatcaccactgctttgcttgttcttgcttacctcactgtctctcccaactccaattctgaatttcccaagatcaaggtgggtacttgttgccttgtcaccacttaccaaactattgtagcaaaattgcagtaccctaaggtggatcacaacaatggtgatggtcatgaagagtttcgatcttttgaggagcttgaagtgtataagattgtgtttgacacatcaagcttggaagttagagagagcccagttgaggaaatgagctcagaagaagcctttgatgcaccaattgatcaaagttacagtcttgggggtaatggcagtattggttatttcttggaagttgcaagtgcgattttggaagaaattagagagagatcagttgaggaaatcaagtcagagagcgcctttgatgcacctgcaagtagtggaattatgtgcaccgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.99

Weight (kDa)

4.47

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25130
fragaria_vesca FvH4_2g18490
malus_domestica MD05G1170600.v1.1 MD10G1158800.v1.1
prunus_persica Prupe.8G197900_v2.0.a1
pyrus_communis pycom05g15780
rosa_chinensis RchiOBHm_Chr6g0284001
rosa_laevigata RLG00000012779
rosa_multiflora Rmu_sc0003102.1_g000005 Rmu_ssc0000442.1_g000040
rosa_rugosa Rorug06G0159200
rosa_samantha Rh6AG272600 Rh6BG273200 Rh6CG274400 Rh6DG267600
rosa_wichuraiana Rw6G023470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AclWI GGATC 1 cut(s) 321
AcsI RAATTY 2 cut(s) 34, 230
AfaI GTAC 2 cut(s) 253, 302
AfiI CCNNNNNNNGG 2 cut(s) 310, 421
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 4 cut(s) 145, 361, 396, 432
AluI AGCT 4 cut(s) 145, 361, 396, 432
Alw21I GWGCWC 2 cut(s) 434, 611
Alw26I GTCTC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 1 cut(s) 321
ApaLI GTGCAC 1 cut(s) 607
ApoI RAATTY 2 cut(s) 34, 230
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 120, 166, 259, 338
AxyI CCTNAGG 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 611
BanII GRGCYC 2 cut(s) 416, 434
Bbv12I GWGCWC 2 cut(s) 434, 611
BccI CCATC 2 cut(s) 102, 323
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 595
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 439, 571
BmuI ACTGGG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 125
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 421
Bse1I ACTGG 1 cut(s) 416
Bse21I CCTNAGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 310, 421
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 3 cut(s) 10, 128, 371
BseSI GKGCMC 1 cut(s) 611
BsiHKAI GWGCWC 2 cut(s) 434, 611
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 310, 421
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 76
Bsp1286I GDGCHC 3 cut(s) 416, 434, 611
Bsp143I GATC 6 cut(s) 49, 240, 313, 347, 460, 545
BspCNI CTCAG 1 cut(s) 446
BspHI TCATGA 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 416
BssMI GATC 6 cut(s) 49, 240, 313, 347, 460, 545
Bst4CI ACNGT 2 cut(s) 208, 473
Bst6I CTCTTC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 306, 433
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 6 cut(s) 52, 243, 316, 350, 463, 548
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 6 cut(s) 49, 240, 313, 347, 460, 545
BstMWI GCNNNNNNNGC 2 cut(s) 449, 581
BstSLI GKGCMC 1 cut(s) 611
Bsu36I CCTNAGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 204
BveI ACCTGC 1 cut(s) 595
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 575
Csp6I GTAC 2 cut(s) 252, 301
CviAII CATG 2 cut(s) 71, 335
CviJI RGCY 6 cut(s) 145, 361, 396, 414, 432, 443
CviKI_1 RGCY 6 cut(s) 145, 361, 396, 414, 432, 443
CviQI GTAC 2 cut(s) 252, 301
DdeI CTNAG 2 cut(s) 306, 433
DpnI GATC 6 cut(s) 51, 242, 315, 349, 462, 547
DpnII GATC 6 cut(s) 49, 240, 313, 347, 460, 545
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 416, 434
Eco53kI GAGCTC 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 432
EcoT38I GRGCYC 2 cut(s) 416, 434
FaeI CATG 2 cut(s) 74, 338
FaiI YATR 6 cut(s) 72, 119, 133, 336, 372, 605
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 70, 334
FbaI TGATCA 1 cut(s) 460
FokI GGATG 1 cut(s) 81
FriOI GRGCYC 2 cut(s) 416, 434
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 576
HhaI GCGC 1 cut(s) 575
Hin1II CATG 2 cut(s) 74, 338
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HindIII AAGCTT 2 cut(s) 143, 394
HphI GGTGA 4 cut(s) 120, 166, 259, 338
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 4 cut(s) 7, 229, 436, 568
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 609
HpyCH4III ACNGT 2 cut(s) 208, 473
HpyCH4V TGCA 6 cut(s) 298, 452, 515, 584, 590, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 581
HpyF3I CTNAG 2 cut(s) 306, 433
Hsp92II CATG 2 cut(s) 74, 338
HspAI GCGC 1 cut(s) 573
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 49, 240, 313, 347, 460, 545
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 2 cut(s) 429, 600
LweI GCATC 2 cut(s) 439, 571
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 265, 467
MalI GATC 6 cut(s) 51, 242, 315, 349, 462, 547
MboI GATC 6 cut(s) 49, 240, 313, 347, 460, 545
MboII GAAGA 5 cut(s) 58, 73, 350, 449, 542
MfeI CAATTG 1 cut(s) 456
MhlI GDGCHC 3 cut(s) 416, 434, 611
MluCI AATT 7 cut(s) 34, 223, 230, 293, 456, 534, 600
MnlI CCTC 9 cut(s) 31, 108, 146, 149, 174, 212, 349, 415, 547
MroXI GAANNNNTTC 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 321
MunI CAATTG 1 cut(s) 456
MwoI GCNNNNNNNGC 2 cut(s) 449, 581
NdeII GATC 6 cut(s) 49, 240, 313, 347, 460, 545
NlaIII CATG 2 cut(s) 74, 338
NmuCI GTSAC 1 cut(s) 265
PagI TCATGA 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 434
RsaI GTAC 2 cut(s) 253, 302
RsaNI GTAC 2 cut(s) 252, 301
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 434
Sau3AI GATC 6 cut(s) 49, 240, 313, 347, 460, 545
SduI GDGCHC 3 cut(s) 416, 434, 611
SetI ASST 9 cut(s) 138, 147, 204, 249, 312, 363, 398, 434, 589
SfaNI GCATC 2 cut(s) 439, 571
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 7 cut(s) 34, 223, 230, 293, 456, 534, 600
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 434
TaaI ACNGT 2 cut(s) 208, 473
TaqI TCGA 1 cut(s) 346
TasI AATT 7 cut(s) 34, 223, 230, 293, 456, 534, 600
TscAI CASTG 2 cut(s) 184, 211
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 73, 106, 160, 351
TspRI CASTG 2 cut(s) 184, 211
VneI GTGCAC 1 cut(s) 607
XapI RAATTY 2 cut(s) 34, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.