pycom05g15780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015343
Physical Location & Seq
Reverse (-)
19283796 .. 19285067
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15780.1

Sequence Viewer

Length: 1272 bp
ATGTCAGAATTTTCTTTCCAACCAAACACGTCCAAGAAAATCAAAATCTCTAGTCTTCTTCTCGCCGACTTGTTCAATCTTTGTTTCTGCATTTTGTCGCACCCTCTTTACTTCTCCTACTTCATATTTTTCTCACCCTACCTCCTCAAGCTCCTTTCTTTTCTATCTCCTCTTTTCATCACCACAGCTCTTCTTGTGGTTGCCTATCTAACGGTCCAACACGAAGTTGCTGATTCCAAATCGTCGAAAGTCAAATTGGGTTGTCTTGTCACTGCGTACCAAACTGTTTTGGAAGGTTTGCACAAGTTTAGAGTTGATGACAGTGATGGCGGTGATCGTGATCATGATCATGAAGAATTCCGGTCTTCCGTGGAGCTTGAAGCGTATAGAATTGTGTTTGACACGTCCACGTTCGAAATCAACGAGACCCCAGCTGAGAAAAATTGCTCACAAGTCTTTGAAGCACAAGTTGAAGATGTGTCAAGTCATGAAGCTAATTGTGCTTCTGATGTTTCTGATGCTGCAAGTGATGTTTTTGACGACAAGTTCGAAATCCCAGCTGAGGCATTCGTAGAAGAAGAAGAAGAGAATTGGCCAGAAAACTTGTGCAAAAAGGAAGAGGAAGAAGAAGTGATCAAGCCACCACCAAGCACAGAGTCCAAGAAAGTTGAAGTACAAGAAGTAAAAGAAAAAAGGTTTATGAGAAGAGGAGAATCCAAGGATTATTTGGGTGATGGAGGTGAGTTAAATTCCAAATTATCCAGGGTAAATTCCCAAACCCTAGGAGCAAATCTTTGGGAATCCAGGTTAAATCCCCAAACCCTTGGAGCAGATGTAGGAGAATGTTACTACAACATGAGTCCAAATCTTGGAAGTTTTGGATCAATGAGGAAAGAGAAGGAGTGGAGAAGGACACTGGCATGCAAGCTTTTTGAGGAGAGGCATCAAAATGTGGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGATGGACATGCTTTGGGAGACATATGATGAGACAGAATCATTAAAAGTGGTGAAAGGTAAAAAAAGCAAGTCAAAGAAGGGGAAAGATGGGAAAGCTGAAAGCAATGATGGTGAAGAGGAAGAGTTTGATGGGCAATTGTGCTGCTTACAGGCATTGAAATTCTCAGCTGGGAAGATGAATTTGGGGATGGGAAGGCCTAATCTTGTCAAGTTTTCCAAGGCACTCAAAGGGTTTGGATGGTTACACCATGTCACCAAGCATGGCAAGAAGGGGCACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

47.45

Weight (kDa)

5.25

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25130
fragaria_vesca FvH4_2g18490
malus_domestica MD05G1170600.v1.1 MD10G1158800.v1.1
prunus_persica Prupe.8G197900_v2.0.a1
pyrus_communis pycom05g15780
rosa_chinensis RchiOBHm_Chr6g0284001
rosa_laevigata RLG00000012779
rosa_multiflora Rmu_sc0003102.1_g000005 Rmu_ssc0000442.1_g000040
rosa_rugosa Rorug06G0159200
rosa_samantha Rh6AG272600 Rh6BG273200 Rh6CG274400 Rh6DG267600
rosa_wichuraiana Rw6G023470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1263
AccB7I CCANNNNNTGG 1 cut(s) 869
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 889
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 6 cut(s) 8, 356, 748, 769, 1148, 1168
AfaI GTAC 2 cut(s) 278, 675
AfiI CCNNNNNNNGG 2 cut(s) 562, 869
AflIII ACRYGT 2 cut(s) 27, 402
AgsI TTSAA 6 cut(s) 76, 380, 461, 473, 671, 1147
AjiI CACGTC 2 cut(s) 30, 405
AjnI CCWGG 2 cut(s) 761, 803
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 1154, 1186
AluBI AGCT 9 cut(s) 151, 188, 376, 434, 494, 560, 928, 1085, 1157
AluI AGCT 9 cut(s) 151, 188, 376, 434, 494, 560, 928, 1085, 1157
Alw26I GTCTC 3 cut(s) 419, 1001, 1013
AlwI GGATC 1 cut(s) 889
AoxI GGCC 2 cut(s) 593, 1184
ApeKI GCWGC 2 cut(s) 521, 1131
ApoI RAATTY 6 cut(s) 8, 356, 748, 769, 1148, 1168
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AspA2I CCTAGG 1 cut(s) 781
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 8 cut(s) 126, 172, 344, 743, 752, 1051, 1112, 1234
AsuII TTCGAA 2 cut(s) 414, 549
AvaII GGWCC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 781
BaeGI GKGCMC 1 cut(s) 1266
BalI TGGCCA 1 cut(s) 595
BanI GGYRCC 1 cut(s) 1263
BbsI GAAGAC 2 cut(s) 47, 357
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 2 cut(s) 508, 1118
BccI CCATC 9 cut(s) 320, 728, 950, 985, 1070, 1091, 1112, 1171, 1221
BciT130I CCWGG 2 cut(s) 763, 805
BclI TGATCA 3 cut(s) 340, 346, 633
BcoDI GTCTC 3 cut(s) 419, 1001, 1013
BfaI CTAG 2 cut(s) 51, 782
BisI GCNGC 2 cut(s) 522, 1132
BlnI CCTAGG 1 cut(s) 781
BlsI GCNGC 2 cut(s) 523, 1133
Bme1390I CCNGG 2 cut(s) 763, 805
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 2 cut(s) 30, 405
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 1265
BmrFI CCNGG 2 cut(s) 763, 805
BmsI GCATC 2 cut(s) 508, 952
BpiI GAAGAC 2 cut(s) 47, 357
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 2 cut(s) 414, 549
BpuEI CTTGAG 1 cut(s) 131
BsaBI GATNNNNATC 2 cut(s) 339, 345
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 6 cut(s) 369, 717, 762, 781, 823, 1206
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 819, 849
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 869
Bse1I ACTGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 1099
Bse8I GATNNNNATC 2 cut(s) 339, 345
BseBI CCWGG 2 cut(s) 763, 805
BseDI CCNNGG 6 cut(s) 369, 717, 762, 781, 823, 1206
BseGI GGATG 4 cut(s) 961, 996, 1182, 1232
BseJI GATNNNNATC 2 cut(s) 339, 345
BseLI CCNNNNNNNGG 2 cut(s) 562, 869
BseMI GCAATG 1 cut(s) 1099
BseMII CTCAG 3 cut(s) 426, 552, 1167
BseNI ACTGG 1 cut(s) 921
BseSI GKGCMC 1 cut(s) 1266
BseXI GCAGC 2 cut(s) 508, 1118
BseYI CCCAGC 3 cut(s) 430, 556, 1157
BshFI GGCC 2 cut(s) 595, 1186
BshNI GGYRCC 1 cut(s) 1263
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 562, 869
BsmAI GTCTC 3 cut(s) 419, 1001, 1013
BsmI GAATGC 1 cut(s) 566
BsnI GGCC 2 cut(s) 595, 1186
Bso31I GGTCTC 1 cut(s) 419
Bsp119I TTCGAA 2 cut(s) 414, 549
Bsp1286I GDGCHC 1 cut(s) 1266
Bsp143I GATC 5 cut(s) 334, 340, 346, 633, 881
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 595, 1186
BspCNI CTCAG 3 cut(s) 427, 553, 1166
BspHI TCATGA 3 cut(s) 343, 349, 487
BspLI GGNNCC 1 cut(s) 1265
BspPI GGATC 1 cut(s) 889
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 2 cut(s) 414, 549
BspT107I GGYRCC 1 cut(s) 1263
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 1099
BsrI ACTGG 1 cut(s) 921
BssECI CCNNGG 6 cut(s) 369, 717, 762, 781, 823, 1206
BssMI GATC 5 cut(s) 334, 340, 346, 633, 881
BssT1I CCWWGG 4 cut(s) 717, 781, 823, 1206
Bst2UI CCWGG 2 cut(s) 763, 805
Bst4CI ACNGT 3 cut(s) 214, 286, 323
Bst6I CTCTTC 6 cut(s) 195, 579, 612, 700, 1098, 1104
BstBI TTCGAA 2 cut(s) 414, 549
BstC8I GCNNGC 2 cut(s) 922, 926
BstDEI CTNAG 3 cut(s) 435, 561, 1153
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 961, 996, 1182, 1232
BstKTI GATC 5 cut(s) 337, 343, 349, 636, 884
BstMAI GTCTC 3 cut(s) 419, 1001, 1013
BstMBI GATC 5 cut(s) 334, 340, 346, 633, 881
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 2 cut(s) 763, 805
BstNSI RCATGY 2 cut(s) 924, 1000
BstSCI CCNGG 2 cut(s) 761, 803
BstSLI GKGCMC 1 cut(s) 1266
BstV1I GCAGC 2 cut(s) 508, 1118
BstV2I GAAGAC 2 cut(s) 47, 357
BstXI CCANNNNNNTGG 1 cut(s) 824
BsuRI GGCC 2 cut(s) 595, 1186
BtgI CCRYGG 1 cut(s) 369
BtrI CACGTC 2 cut(s) 30, 405
BtsCI GGATG 4 cut(s) 961, 996, 1182, 1232
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 270, 328, 914
Cac8I GCNNGC 2 cut(s) 922, 926
CciI TCATGA 3 cut(s) 343, 349, 487
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 277, 674
CviAII CATG 8 cut(s) 344, 350, 488, 856, 921, 997, 1238, 1250
CviQI GTAC 2 cut(s) 277, 674
DdeI CTNAG 3 cut(s) 435, 561, 1153
DpnI GATC 5 cut(s) 336, 342, 348, 635, 883
DpnII GATC 5 cut(s) 334, 340, 346, 633, 881
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 6 cut(s) 195, 579, 612, 700, 1098, 1104
EarI CTCTTC 6 cut(s) 195, 579, 612, 700, 1098, 1104
Eco130I CCWWGG 4 cut(s) 717, 781, 823, 1206
Eco147I AGGCCT 1 cut(s) 1186
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 2 cut(s) 761, 803
EcoT14I CCWWGG 4 cut(s) 717, 781, 823, 1206
ErhI CCWWGG 4 cut(s) 717, 781, 823, 1206
FaeI CATG 8 cut(s) 347, 353, 491, 859, 924, 1000, 1241, 1253
FatI CATG 8 cut(s) 343, 349, 487, 855, 920, 996, 1237, 1249
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 3 cut(s) 340, 346, 633
Fnu4HI GCNGC 2 cut(s) 522, 1132
FokI GGATG 4 cut(s) 968, 1003, 1189, 1239
Fsp4HI GCNGC 2 cut(s) 522, 1132
FspBI CTAG 2 cut(s) 51, 782
GluI GCNGC 2 cut(s) 522, 1132
GsaI CCCAGC 3 cut(s) 434, 560, 1161
HaeIII GGCC 2 cut(s) 595, 1186
HapII CCGG 1 cut(s) 361
Hin1II CATG 8 cut(s) 347, 353, 491, 859, 924, 1000, 1241, 1253
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 6 cut(s) 233, 656, 713, 800, 859, 1025
HpaII CCGG 1 cut(s) 361
HphI GGTGA 8 cut(s) 126, 172, 344, 743, 752, 1051, 1112, 1234
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 3 cut(s) 7, 508, 517
Hpy188III TCNNGA 4 cut(s) 338, 344, 350, 488
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 7 cut(s) 287, 892, 903, 980, 1060, 1176, 1252
HpyCH4III ACNGT 3 cut(s) 214, 286, 323
HpyCH4IV ACGT 3 cut(s) 29, 404, 410
HpyCH4V TGCA 5 cut(s) 90, 301, 524, 609, 924
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 3 cut(s) 435, 561, 1153
HpySE526I ACGT 3 cut(s) 29, 404, 410
Hsp92II CATG 8 cut(s) 347, 353, 491, 859, 924, 1000, 1241, 1253
Ksp22I TGATCA 3 cut(s) 340, 346, 633
Kzo9I GATC 5 cut(s) 334, 340, 346, 633, 881
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 4 cut(s) 156, 373, 785, 827
Lsp1109I GCAGC 2 cut(s) 508, 1118
LweI GCATC 2 cut(s) 508, 952
MaeI CTAG 2 cut(s) 51, 782
MaeII ACGT 3 cut(s) 29, 404, 410
MaeIII GTNAC 4 cut(s) 268, 845, 1230, 1240
MalI GATC 5 cut(s) 336, 342, 348, 635, 883
MboI GATC 5 cut(s) 334, 340, 346, 633, 881
MfeI CAATTG 1 cut(s) 1124
MhlI GDGCHC 1 cut(s) 1266
MlsI TGGCCA 1 cut(s) 595
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 2 cut(s) 665, 868
MmeI TCCRAC 2 cut(s) 43, 241
Mox20I TGGCCA 1 cut(s) 595
MscI TGGCCA 1 cut(s) 595
MseI TTAA 3 cut(s) 746, 809, 1031
MslI CAYNNNNRTG 3 cut(s) 348, 919, 948
Msp20I TGGCCA 1 cut(s) 595
MspA1I CMGCKG 3 cut(s) 434, 560, 1157
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 763, 805
MunI CAATTG 1 cut(s) 1124
Mva1269I GAATGC 1 cut(s) 566
MvaI CCWGG 2 cut(s) 763, 805
MwoI GCNNNNNNNGC 1 cut(s) 500
NdeI CATATG 1 cut(s) 1012
NdeII GATC 5 cut(s) 334, 340, 346, 633, 881
NlaIII CATG 8 cut(s) 347, 353, 491, 859, 924, 1000, 1241, 1253
NlaIV GGNNCC 1 cut(s) 1265
NmuCI GTSAC 2 cut(s) 268, 1240
NspI RCATGY 2 cut(s) 924, 1000
NspV TTCGAA 2 cut(s) 414, 549
PaeI GCATGC 1 cut(s) 924
PagI TCATGA 3 cut(s) 343, 349, 487
PceI AGGCCT 1 cut(s) 1186
PciSI GCTCTTC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 546
PctI GAATGC 1 cut(s) 566
PfeI GAWTC 4 cut(s) 233, 713, 800, 1025
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 2 cut(s) 523, 1133
PleI GAGTC 2 cut(s) 664, 867
PpsI GAGTC 2 cut(s) 664, 867
Psp6I CCWGG 2 cut(s) 761, 803
PspFI CCCAGC 3 cut(s) 430, 556, 1157
PspGI CCWGG 2 cut(s) 761, 803
PspN4I GGNNCC 1 cut(s) 1265
PspPI GGNCC 1 cut(s) 214
PvuII CAGCTG 3 cut(s) 434, 560, 1157
RsaI GTAC 2 cut(s) 278, 675
RsaNI GTAC 2 cut(s) 277, 674
RseI CAYNNNNRTG 3 cut(s) 348, 919, 948
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 746, 809, 1031
SatI GCNGC 2 cut(s) 522, 1132
Sau3AI GATC 5 cut(s) 334, 340, 346, 633, 881
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 665, 868
ScrFI CCNGG 2 cut(s) 763, 805
SduI GDGCHC 1 cut(s) 1266
SfaNI GCATC 2 cut(s) 508, 952
SfuI TTCGAA 2 cut(s) 414, 549
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 3 cut(s) 348, 919, 948
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SphI GCATGC 1 cut(s) 924
SseBI AGGCCT 1 cut(s) 1186
SsiI CCGC 1 cut(s) 330
SspMI CTAG 2 cut(s) 51, 782
StuI AGGCCT 1 cut(s) 1186
StyD4I CCNGG 2 cut(s) 761, 803
StyI CCWWGG 4 cut(s) 717, 781, 823, 1206
TaaI ACNGT 3 cut(s) 214, 286, 323
TaiI ACGT 3 cut(s) 32, 407, 413
TaqI TCGA 3 cut(s) 245, 414, 549
TatI WGTACW 1 cut(s) 673
TfiI GAWTC 4 cut(s) 233, 713, 800, 1025
Tru1I TTAA 3 cut(s) 746, 809, 1031
Tru9I TTAA 3 cut(s) 746, 809, 1031
TscAI CASTG 3 cut(s) 277, 328, 921
TseFI GTSAC 2 cut(s) 268, 1240
TseI GCWGC 2 cut(s) 521, 1131
Tsp45I GTSAC 2 cut(s) 268, 1240
TspDTI ATGAA 5 cut(s) 112, 166, 366, 504, 1181
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 3 cut(s) 277, 328, 921
Van91I CCANNNNNTGG 1 cut(s) 869
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 6 cut(s) 8, 356, 748, 769, 1148, 1168
XceI RCATGY 2 cut(s) 924, 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmaJI CCTAGG 1 cut(s) 781
XspI CTAG 2 cut(s) 51, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.