Rw6G023470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015343
Physical Location & Seq
Reverse (-)
45999253 .. 46001267
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023470.1

Sequence Viewer

Length: 1713 bp
ATGTCTGAACTATCTTTCTCCTCCAAGAACTCAAATTTCTCTAGCATTGATCTCCTTGCCGACTTCTTCCATGTCTGTTTCTTCATTCTGTCCCATCCTCTTTACTTTTCTTACTTCATATTTTTCTCACCATACCTCCTCAAGCTTCTGTCTTTCCTATCCCCTCTGTTCATCACCACTGCTTTGCTTGTTCTTGCTTACCTCACTGTCTCTCCCAACTCCAATTCTGAATTTCCCAAGATCAAGGTGGGTACTTGTTGCCTTGTCACCACTTACCAAACTATTGTAGCAAAATTGCAGTACCCTAAGGTGGATCACAACAATGGTGATGATCATGAAGAGTTTCGATCTTTCGAGGAGCTTGAAGTGTATAAGATTGTGTTTGACACATCAAGCTTGGAAGTTAGAGAGAGCCCAGTTGAGGAAATGAGCTCAGAAGAAGCCTTTGATGCACCAATTGATCAAAGTTACAGTCTTGGAGGTAATGGCAGTATTGGTTATTTCTTGGAAGTTGCAAGTGCGATTTTGGAAGAAATTAGAGAGAGATCAGTTGAGGAAATCAAGTCAGAGAGCGCCTTTGATGCACCTATTGATGAAAGTTCCAGTCTTGAAGGAAATAGCAAAACTGGTTATTTGTTGGAAGGTGCAAGTACAATTTGGGAAGAAAATGGAGAGAACCCAGATGAGAAAAATAGCTCAGCACAAGTCTTTGATGCAGCATTTGATGAAAGATCCAGTCCTGAAGGTAGTGAGAGTTCTGGTTATTTCTCGGAAGCTTCAAGTGTCATTTTGGAACAGAACCCTGTTGAGAAGAAATGCCCATCACAAGTCTCTGGTGCACCAATTGATGAAAAGTCCAGTCCTGAAGGCAATGACAGTACTAGTTATTTCTTTGAAGCTTCATGTGCAATTTTGGAAGAAACTAGAGAGAACCCTGTTGAGAAAAAATGCTCATCACAAGTCTCTGACGCACCAATTGTTAAAAGTACCGGTCTTGAAGGCAAAGGTACTACTAAAAATGTGTTGGAAGCAGCTAGTGTAATTTTGAACAAAAAAGAAGTTGAGGAAGAGAAAGAGGTCAAGCCACTAAGCGCATACTTCGATAAAGTTGAAGATGAAGAAGAAAAAAGATCAATGAGGAGAGAATCCAAGGATAGAGATATGGGTGCTAATGGTGGAGGGTTTAGATCCAAATCCATGGTGATTAATTCCCAATTTCTAGGAACAAACCTTGGAAGTCCTGGTGTGAAAGCTATGGAAGATTCTCAAATTATGGGTCCAAATCTTGGGAGTTTTGGTTCAATGAGGAAAGAAAAAGAGTGGAGAAGGACATTGGCATGCAAGCTTTTTGAGGAGAGGCATCAAAATGTGGATGGAGGAGGTGAAGGAATGGACATGCTTTGGGAGACATATGATGAGACAGAATCAGGTAAAGTTCTGCAAGGTATCAAGACCAAGTCAAAGAAGCAGGGTAAGAAGACCAATGGCAATAAGGTTGACCACAATGAGGTTGATGACGATGATGATGAAGAGGAAGAAGATGAAGAACTGGATAATGGGCAATTGTGCTGCTTGCAGGCATTGAAATTCTCAGCAGGGAAGATGAATTTGGGGCACATGGGAAGGCCAAATCTTGTCAAGATTACCAAGGCACTCAAAGGGTTTGGATGGTTGCACCATGTCACCAAGCATAGCAAGAAAGGGTACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

570

Amino Acids

63.35

Weight (kDa)

4.76

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25130
fragaria_vesca FvH4_2g18490
malus_domestica MD05G1170600.v1.1 MD10G1158800.v1.1
prunus_persica Prupe.8G197900_v2.0.a1
pyrus_communis pycom05g15780
rosa_chinensis RchiOBHm_Chr6g0284001
rosa_laevigata RLG00000012779
rosa_multiflora Rmu_sc0003102.1_g000005 Rmu_ssc0000442.1_g000040
rosa_rugosa Rorug06G0159200
rosa_samantha Rh6AG272600 Rh6BG273200 Rh6CG274400 Rh6DG267600
rosa_wichuraiana Rw6G023470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1704
AccB1I GGYRCC 1 cut(s) 1704
AccB7I CCANNNNNTGG 1 cut(s) 1286
AclWI GGATC 3 cut(s) 321, 726, 1182
AcsI RAATTY 4 cut(s) 34, 230, 1586, 1606
AcuI CTGAAG 2 cut(s) 762, 885
AfaI GTAC 7 cut(s) 253, 302, 652, 880, 988, 1009, 1706
AfiI CCNNNNNNNGG 4 cut(s) 310, 421, 1286, 1507
AgeI ACCGGT 1 cut(s) 989
AgsI TTSAA 9 cut(s) 365, 611, 780, 896, 998, 1048, 1112, 1302, 1585
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 1 cut(s) 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 1592, 1624
AloI GAACNNNNNNTCC 2 cut(s) 1282, 1314
Alw21I GWGCWC 2 cut(s) 434, 841
Alw26I GTCTC 5 cut(s) 214, 835, 967, 1400, 1412
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 3 cut(s) 321, 726, 1182
AoxI GGCC 1 cut(s) 1625
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 3 cut(s) 716, 1031, 1569
ApoI RAATTY 4 cut(s) 34, 230, 1586, 1606
ArsI GACNNNNNNTTYG 4 cut(s) 457, 489, 1261, 1293
AseI ATTAAT 1 cut(s) 1206
AsiGI ACCGGT 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 342
Asp718I GGTACC 1 cut(s) 1704
AspLEI GCGC 2 cut(s) 575, 1094
AspS9I GGNCC 1 cut(s) 1277
AsuHPI GGTGA 7 cut(s) 120, 166, 259, 338, 1213, 1394, 1675
AvaII GGWCC 1 cut(s) 1277
AxyI CCTNAGG 1 cut(s) 306
BaeGI GKGCMC 2 cut(s) 841, 1617
BanI GGYRCC 1 cut(s) 1704
BanII GRGCYC 2 cut(s) 416, 434
BbsI GAAGAC 1 cut(s) 1484
Bbv12I GWGCWC 2 cut(s) 434, 841
BbvI GCAGC 3 cut(s) 728, 1043, 1556
BccI CCATC 4 cut(s) 102, 829, 1367, 1662
BciT130I CCWGG 1 cut(s) 1242
BclI TGATCA 2 cut(s) 331, 460
BcoDI GTCTC 5 cut(s) 214, 835, 967, 1400, 1412
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 5 cut(s) 42, 882, 924, 1035, 1220
BfoI RGCGCY 1 cut(s) 576
BisI GCNGC 3 cut(s) 717, 1032, 1570
BlpI GCTNAGC 1 cut(s) 697
BlsI GCNGC 3 cut(s) 718, 1033, 1571
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 1 cut(s) 1242
Bme18I GGWCC 1 cut(s) 1277
BmgT120I GGNCC 1 cut(s) 1277
BmiI GGNNCC 2 cut(s) 1278, 1706
BmrFI CCNGG 1 cut(s) 1242
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 4 cut(s) 439, 571, 703, 1369
BmuI ACTGGG 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 1484
Bpu1102I GCTNAGC 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 1192
BsaJI CCNNGG 4 cut(s) 1149, 1197, 1231, 1647
BsaWI WCCGGW 1 cut(s) 989
BsaXI ACNNNNNCTCC 6 cut(s) 120, 150, 196, 226, 1282, 1312
Bsc4I CCNNNNNNNGG 4 cut(s) 310, 421, 1286, 1507
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 6 cut(s) 416, 603, 631, 735, 858, 1554
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 877
Bse8I GATNNNNATC 1 cut(s) 1192
BseBI CCWGG 1 cut(s) 1242
BseDI CCNNGG 4 cut(s) 1149, 1197, 1231, 1647
BseGI GGATG 3 cut(s) 94, 1378, 1673
BseJI GATNNNNATC 1 cut(s) 1192
BseLI CCNNNNNNNGG 4 cut(s) 310, 421, 1286, 1507
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 3 cut(s) 447, 711, 1605
BseNI ACTGG 6 cut(s) 416, 603, 631, 735, 858, 1554
BseRI GAGGAG 6 cut(s) 10, 128, 371, 1153, 1367, 1392
BseSI GKGCMC 2 cut(s) 841, 1617
BseXI GCAGC 3 cut(s) 728, 1043, 1556
BshFI GGCC 1 cut(s) 1627
BshNI GGYRCC 1 cut(s) 1704
BshTI ACCGGT 1 cut(s) 989
BsiHKAI GWGCWC 2 cut(s) 434, 841
BsiSI CCGG 1 cut(s) 990
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 4 cut(s) 310, 421, 1286, 1507
BsmAI GTCTC 5 cut(s) 214, 835, 967, 1400, 1412
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 1627
Bsp1286I GDGCHC 4 cut(s) 416, 434, 841, 1617
Bsp1720I GCTNAGC 1 cut(s) 697
Bsp19I CCATGG 1 cut(s) 1197
BspANI GGCC 1 cut(s) 1627
BspCNI CTCAG 3 cut(s) 446, 710, 1604
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 1278, 1706
BspPI GGATC 3 cut(s) 321, 726, 1182
BspT107I GGYRCC 1 cut(s) 1704
BsrDI GCAATG 1 cut(s) 877
BsrFI RCCGGY 1 cut(s) 989
BsrI ACTGG 6 cut(s) 416, 603, 631, 735, 858, 1554
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 4 cut(s) 1149, 1197, 1231, 1647
BssT1I CCWWGG 4 cut(s) 1149, 1197, 1231, 1647
Bst2UI CCWGG 1 cut(s) 1242
Bst4CI ACNGT 3 cut(s) 208, 473, 878
Bst6I CTCTTC 3 cut(s) 333, 1062, 1524
BstC8I GCNNGC 4 cut(s) 1339, 1343, 1574, 1578
BstDEI CTNAG 5 cut(s) 306, 433, 697, 1088, 1591
BstDSI CCRYGG 1 cut(s) 1197
BstF5I GGATG 3 cut(s) 94, 1378, 1673
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 2 cut(s) 575, 1094
BstMAI GTCTC 5 cut(s) 214, 835, 967, 1400, 1412
BstMWI GCNNNNNNNGC 3 cut(s) 449, 581, 905
BstNI CCWGG 1 cut(s) 1242
BstNSI RCATGY 2 cut(s) 1341, 1399
BstSCI CCNGG 1 cut(s) 1240
BstSLI GKGCMC 2 cut(s) 841, 1617
BstV1I GCAGC 3 cut(s) 728, 1043, 1556
BstV2I GAAGAC 1 cut(s) 1484
BstX2I RGATCY 2 cut(s) 731, 1187
BstXI CCANNNNNNTGG 1 cut(s) 1198
BstYI RGATCY 2 cut(s) 731, 1187
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 1627
BtgI CCRYGG 1 cut(s) 1197
BtsCI GGATG 3 cut(s) 94, 1378, 1673
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 204
Cac8I GCNNGC 4 cut(s) 1339, 1343, 1574, 1578
CciI TCATGA 1 cut(s) 334
CfoI GCGC 2 cut(s) 575, 1094
Cfr10I RCCGGY 1 cut(s) 989
Cfr13I GGNCC 1 cut(s) 1277
CseI GACGC 1 cut(s) 977
Csp6I GTAC 7 cut(s) 252, 301, 651, 879, 987, 1008, 1705
CspAI ACCGGT 1 cut(s) 989
CviAII CATG 8 cut(s) 71, 335, 903, 1198, 1338, 1396, 1618, 1679
CviQI GTAC 7 cut(s) 252, 301, 651, 879, 987, 1008, 1705
DdeI CTNAG 5 cut(s) 306, 433, 697, 1088, 1591
Eam1104I CTCTTC 3 cut(s) 333, 1062, 1524
EarI CTCTTC 3 cut(s) 333, 1062, 1524
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 4 cut(s) 1149, 1197, 1231, 1647
Eco24I GRGCYC 2 cut(s) 416, 434
Eco47I GGWCC 1 cut(s) 1277
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 2 cut(s) 762, 885
Eco81I CCTNAGG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 1240
EcoT14I CCWWGG 4 cut(s) 1149, 1197, 1231, 1647
EcoT38I GRGCYC 2 cut(s) 416, 434
ErhI CCWWGG 4 cut(s) 1149, 1197, 1231, 1647
FaeI CATG 8 cut(s) 74, 338, 906, 1201, 1341, 1399, 1621, 1682
FaqI GGGAC 1 cut(s) 76
FatI CATG 8 cut(s) 70, 334, 902, 1197, 1337, 1395, 1617, 1678
FauNDI CATATG 1 cut(s) 1411
FbaI TGATCA 2 cut(s) 331, 460
Fnu4HI GCNGC 3 cut(s) 717, 1032, 1570
FokI GGATG 3 cut(s) 81, 1385, 1680
FriOI GRGCYC 2 cut(s) 416, 434
Fsp4HI GCNGC 3 cut(s) 717, 1032, 1570
FspBI CTAG 5 cut(s) 42, 882, 924, 1035, 1220
GlaI GCGC 2 cut(s) 574, 1093
GluI GCNGC 3 cut(s) 717, 1032, 1570
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 1 cut(s) 1627
HapII CCGG 1 cut(s) 990
HgaI GACGC 1 cut(s) 977
HhaI GCGC 2 cut(s) 575, 1094
Hin1II CATG 8 cut(s) 74, 338, 906, 1201, 1341, 1399, 1621, 1682
Hin6I GCGC 2 cut(s) 573, 1092
HinP1I GCGC 2 cut(s) 573, 1092
HincII GTYRAC 1 cut(s) 1498
HindII GTYRAC 1 cut(s) 1498
HindIII AAGCTT 5 cut(s) 143, 394, 774, 897, 1343
HinfI GANTC 3 cut(s) 1145, 1262, 1424
HpaII CCGG 1 cut(s) 990
HphI GGTGA 7 cut(s) 120, 166, 259, 338, 1213, 1394, 1675
Hpy166II GTNNAC 2 cut(s) 839, 1498
Hpy188I TCNGA 6 cut(s) 7, 229, 436, 568, 772, 967
Hpy188III TCNNGA 7 cut(s) 335, 608, 740, 863, 995, 1450, 1639
Hpy8I GTNNAC 2 cut(s) 839, 1498
HpyAV CCTTC 8 cut(s) 605, 635, 737, 860, 992, 1320, 1379, 1617
HpyCH4III ACNGT 3 cut(s) 208, 473, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 581, 905
HpyF3I CTNAG 5 cut(s) 306, 433, 697, 1088, 1591
Hsp92II CATG 8 cut(s) 74, 338, 906, 1201, 1341, 1399, 1621, 1682
HspAI GCGC 2 cut(s) 573, 1092
KpnI GGTACC 1 cut(s) 1708
Ksp22I TGATCA 2 cut(s) 331, 460
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 728, 1043, 1556
LweI GCATC 4 cut(s) 439, 571, 703, 1369
MaeI CTAG 5 cut(s) 42, 882, 924, 1035, 1220
MaeIII GTNAC 3 cut(s) 265, 467, 1681
MfeI CAATTG 4 cut(s) 456, 843, 975, 1562
MflI RGATCY 2 cut(s) 731, 1187
MhlI GDGCHC 4 cut(s) 416, 434, 841, 1617
MmeI TCCRAC 2 cut(s) 618, 1005
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 981, 1206
MslI CAYNNNNRTG 3 cut(s) 321, 1336, 1365
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 1 cut(s) 1242
MunI CAATTG 4 cut(s) 456, 843, 975, 1562
MvaI CCWGG 1 cut(s) 1242
MwoI GCNNNNNNNGC 3 cut(s) 449, 581, 905
NcoI CCATGG 1 cut(s) 1197
NdeI CATATG 1 cut(s) 1411
NlaIII CATG 8 cut(s) 74, 338, 906, 1201, 1341, 1399, 1621, 1682
NlaIV GGNNCC 2 cut(s) 1278, 1706
NmuCI GTSAC 2 cut(s) 265, 1681
NspI RCATGY 2 cut(s) 1341, 1399
PaeI GCATGC 1 cut(s) 1341
PagI TCATGA 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 3 cut(s) 1145, 1262, 1424
PflFI GACNNNGTC 1 cut(s) 1456
PflMI CCANNNNNTGG 1 cut(s) 1286
PinAI ACCGGT 1 cut(s) 989
PkrI GCNGC 3 cut(s) 718, 1033, 1571
PshBI ATTAAT 1 cut(s) 1206
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 1240
PspGI CCWGG 1 cut(s) 1240
PspN4I GGNNCC 2 cut(s) 1278, 1706
PspPI GGNCC 1 cut(s) 1277
PsrI GAACNNNNNNTAC 2 cut(s) 739, 771
PsuI RGATCY 2 cut(s) 731, 1187
PsyI GACNNNGTC 1 cut(s) 1456
RsaI GTAC 7 cut(s) 253, 302, 652, 880, 988, 1009, 1706
RsaNI GTAC 7 cut(s) 252, 301, 651, 879, 987, 1008, 1705
RseI CAYNNNNRTG 3 cut(s) 321, 1336, 1365
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 981, 1206
SatI GCNGC 3 cut(s) 717, 1032, 1570
Sau96I GGNCC 1 cut(s) 1277
ScaI AGTACT 1 cut(s) 880
ScrFI CCNGG 1 cut(s) 1242
SduI GDGCHC 4 cut(s) 416, 434, 841, 1617
SfaNI GCATC 4 cut(s) 439, 571, 703, 1369
SinI GGWCC 1 cut(s) 1277
SmiMI CAYNNNNRTG 3 cut(s) 321, 1336, 1365
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 881
SphI GCATGC 1 cut(s) 1341
SspMI CTAG 5 cut(s) 42, 882, 924, 1035, 1220
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 1240
StyI CCWWGG 4 cut(s) 1149, 1197, 1231, 1647
TaaI ACNGT 3 cut(s) 208, 473, 878
TaqI TCGA 3 cut(s) 346, 354, 1101
TatI WGTACW 2 cut(s) 650, 878
TfiI GAWTC 3 cut(s) 1145, 1262, 1424
Tru1I TTAA 2 cut(s) 981, 1206
Tru9I TTAA 2 cut(s) 981, 1206
TscAI CASTG 2 cut(s) 184, 211
TseFI GTSAC 2 cut(s) 265, 1681
TseI GCWGC 3 cut(s) 716, 1031, 1569
Tsp45I GTSAC 2 cut(s) 265, 1681
TspRI CASTG 2 cut(s) 184, 211
Tth111I GACNNNGTC 1 cut(s) 1456
Van91I CCANNNNNTGG 1 cut(s) 1286
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 1 cut(s) 1277
VspI ATTAAT 1 cut(s) 1206
XapI RAATTY 4 cut(s) 34, 230, 1586, 1606
XceI RCATGY 2 cut(s) 1341, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 5 cut(s) 42, 882, 924, 1035, 1220
ZrmI AGTACT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.