Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012392

Physical Location & Seq

Genomic Coordinates Forward (+)

21955705 .. 21957155

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGATTCAGAAGCTAAGCAGACAACAGAAACGGTGCAAGTGAATGAGAAAAATCTCAAGTATATGGAGTTTGTTCAAGTGGCGGCGATTTACGTCGTGGTGTGCTTCTCGAGCCTCTACGAGTATGCAAAGGAAAACTCCGGTCCACTTAAACCGGGGGTTCAGACCGTGGAAGGCACCGTCAAAACCGTAATTGGACCGGTCTACGAGAAGTTCCACGACCTTCCCTTCCAGCTGCTCAAATTTGTCGATCGCAAGGTGGACGAGTCCTTCAGCGAGTTGGACCGTCGCGTGCCCTGTCTTGTGAAGCAGGCGTCGAGCCAAGCCCTATCGGTGGCTCAGAAGGCTCCGGAGGTGGCTCGAACCGTGGCTTCGGAAGTCCAGCAAGCTGGCTTGGTGGACACGGCTAGGAACCTCACGGTGAGCGTGTACGCTAAATACGAGCCAGTGGCTGAGCAGTACGCGGTGTCGGCTTGGCGCTCACTGAATGGGCTCCCGCTGTTTCCCCAAGTGGCTCAGATAATGGTCCCTACCGTGGTTTACTGGTCGGAAAAGTACAATGAGGCTGTTGGTTACACGGCCGACAGAGGCTACTCCGGGGCGGCGTTTCTGCCGTTGATTCCGACGGAGAGGATTGCCAAAGTGTTTGATGAAGCCGAGAATGGCCCTGCTGTTTCGACTAGTGGTGGAGCTGTTGCTATGGAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005811 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0016043 GO:0019915 GO:0032502 GO:0033036 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0050789 GO:0051179 GO:0051235 GO:0065007 GO:0065008 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

238

Amino Acids

25.99

Weight (kDa)

5.01

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47780
fragaria_vesca	FvH4_2g25450
malus_domestica	MD03G1285600.v1.1 MD11G1305000.v1.1
prunus_persica	Prupe.8G258700_v2.0.a1 Prupe.8G258700_v2.0.a1
pyrus_communis	pycom11g26680
rosa_chinensis	RchiOBHm_Chr6g0293681
rosa_laevigata	RLG00000011933
rosa_multiflora	Rmu_co8092110.1_g000001 Rmu_sc0008436.1_g000002 Rmu_sc0028689.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173990
rosa_rugosa	Rorug06G0237400
rosa_samantha	Rh6AG350000 Rh6BG357500 Rh6CG364300 Rh6DG351200
rosa_wichuraiana	Rw6G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	2 cut(s)	294, 467
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	5 cut(s)	5, 86, 467, 500, 605
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	3 cut(s)	434, 464, 560
AfiI	CCNNNNNNNGG	2 cut(s)	337, 538
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	80
AhlI	ACTAGT	1 cut(s)	683
AluBI	AGCT	4 cut(s)	17, 238, 392, 695
AluI	AGCT	4 cut(s)	17, 238, 392, 695
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	2 cut(s)	582, 667
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	245
AsiGI	ACCGGT	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	5 cut(s)	146, 200, 286, 529, 668
AsuC2I	CCSGG	2 cut(s)	159, 601
AsuHPI	GGTGA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	4 cut(s)	146, 200, 286, 529
BaeGI	GKGCMC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	225
BceAI	ACGGC	3 cut(s)	423, 597, 601
BcnI	CCSGG	2 cut(s)	159, 601
BcuI	ACTAGT	1 cut(s)	683
BfaI	CTAG	2 cut(s)	411, 684
BfoI	RGCGCY	1 cut(s)	484
BisI	GCNGC	3 cut(s)	87, 239, 606
BlpI	GCTNAGC	2 cut(s)	18, 456
BlsI	GCNGC	3 cut(s)	88, 240, 607
Bme1390I	CCNGG	2 cut(s)	159, 601
Bme18I	GGWCC	4 cut(s)	146, 200, 286, 529
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	5 cut(s)	146, 200, 286, 529, 668
BmiI	GGNNCC	5 cut(s)	181, 351, 416, 497, 531
BmrFI	CCNGG	2 cut(s)	159, 601
Bpu1102I	GCTNAGC	2 cut(s)	18, 456
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	159, 601
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	5 cut(s)	158, 171, 369, 537, 600
BsaWI	WCCGGW	3 cut(s)	143, 202, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 538
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	449, 551
BseAI	TCCGGA	1 cut(s)	352
BseDI	CCNNGG	5 cut(s)	158, 171, 369, 537, 600
BseLI	CCNNNNNNNGG	2 cut(s)	337, 538
BseMII	CTCAG	3 cut(s)	356, 447, 533
BseNI	ACTGG	2 cut(s)	449, 551
BseSI	GKGCMC	1 cut(s)	300
BseX3I	CGGCCG	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	294, 467
Bsh1285I	CGRYCG	2 cut(s)	256, 585
BshFI	GGCC	2 cut(s)	584, 669
BshNI	GGYRCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	256, 585
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	5 cut(s)	144, 158, 203, 353, 600
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	337, 538
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	584, 669
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	300, 498
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	2 cut(s)	18, 456
BspACI	CCGC	5 cut(s)	5, 86, 467, 500, 605
BspANI	GGCC	2 cut(s)	584, 669
BspCNI	CTCAG	3 cut(s)	355, 448, 532
BspEI	TCCGGA	1 cut(s)	352
BspFNI	CGCG	2 cut(s)	294, 467
BspLI	GGNNCC	5 cut(s)	181, 351, 416, 497, 531
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	449, 551
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	5 cut(s)	158, 171, 369, 537, 600
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	317
Bst4CI	ACNGT	8 cut(s)	37, 172, 184, 193, 290, 370, 424, 538
BstACI	GRCGYC	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	296, 315, 390, 394
BstDEI	CTNAG	4 cut(s)	18, 342, 456, 519
BstDSI	CCRYGG	3 cut(s)	171, 369, 537
BstFNI	CGCG	2 cut(s)	294, 467
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMCI	CGRYCG	2 cut(s)	256, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 347, 473
BstSCI	CCNGG	2 cut(s)	157, 599
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	2 cut(s)	294, 467
BstV1I	GCAGC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstZI	CGGCCG	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	584, 669
BtgI	CCRYGG	3 cut(s)	171, 369, 537
BtsIMutI	CAGTG	2 cut(s)	456, 485
Cac8I	GCNNGC	4 cut(s)	296, 315, 390, 394
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	5 cut(s)	146, 200, 286, 529, 668
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	3 cut(s)	433, 463, 559
CspAI	ACCGGT	1 cut(s)	202
CviQI	GTAC	3 cut(s)	433, 463, 559
DdeI	CTNAG	4 cut(s)	18, 342, 456, 519
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	582
EagI	CGGCCG	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	4 cut(s)	146, 200, 286, 529
Eco52I	CGGCCG	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	498
FaiI	YATR	4 cut(s)	66, 68, 129, 704
FaqI	GGGAC	1 cut(s)	515
FauI	CCCGC	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	87, 239, 606
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	3 cut(s)	87, 239, 606
FspBI	CTAG	2 cut(s)	411, 684
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	3 cut(s)	87, 239, 606
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	584, 669
HapII	CCGG	5 cut(s)	144, 158, 203, 353, 600
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	483
Hin1I	GRCGYC	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	8, 269, 622
HpaII	CCGG	5 cut(s)	144, 158, 203, 353, 600
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	6 cut(s)	149, 208, 265, 403, 433, 544
Hpy188I	TCNGA	7 cut(s)	13, 168, 345, 379, 522, 553, 627
Hpy188III	TCNNGA	2 cut(s)	112, 353
Hpy8I	GTNNAC	6 cut(s)	149, 208, 265, 403, 433, 544
Hpy99I	CGWCG	4 cut(s)	101, 294, 322, 631
HpyAV	CCTTC	5 cut(s)	170, 236, 241, 283, 340
HpyCH4III	ACNGT	8 cut(s)	37, 172, 184, 193, 290, 370, 424, 538
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	40, 131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 347, 473
HpyF3I	CTNAG	4 cut(s)	18, 342, 456, 519
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	317
HspAI	GCGC	1 cut(s)	481
Kpn2I	TCCGGA	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	4 cut(s)	355, 501, 692, 706
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	411, 684
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	300, 498
MluCI	AATT	2 cut(s)	195, 245
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	3 cut(s)	264, 531, 650
MnlI	CCTC	6 cut(s)	128, 349, 428, 559, 584, 627
MroI	TCCGGA	1 cut(s)	352
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	2 cut(s)	238, 502
MspI	CCGG	5 cut(s)	144, 158, 203, 353, 600
MspR9I	CCNGG	2 cut(s)	159, 601
MvnI	CGCG	2 cut(s)	294, 467
MwoI	GCNNNNNNNGC	3 cut(s)	114, 347, 473
NciI	CCSGG	2 cut(s)	159, 601
NdeII	GATC	1 cut(s)	253
NlaIV	GGNNCC	5 cut(s)	181, 351, 416, 497, 531
NmeAIII	GCCGAG	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	8, 622
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	88, 240, 607
Ple19I	CGATCG	1 cut(s)	256
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	5 cut(s)	181, 351, 416, 497, 531
PspPI	GGNCC	5 cut(s)	146, 200, 286, 529, 668
PstNI	CAGNNNCTG	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	3 cut(s)	434, 464, 560
RsaNI	GTAC	3 cut(s)	433, 463, 559
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	87, 239, 606
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	5 cut(s)	146, 200, 286, 529, 668
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	159, 601
SduI	GDGCHC	2 cut(s)	300, 498
SetI	ASST	9 cut(s)	19, 99, 228, 240, 264, 360, 394, 420, 697
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	4 cut(s)	146, 200, 286, 529
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	59, 112
SmoI	CTYRAG	2 cut(s)	59, 112
SpeI	ACTAGT	1 cut(s)	683
Sse9I	AATT	2 cut(s)	195, 245
SsiI	CCGC	5 cut(s)	5, 86, 467, 500, 605
SspMI	CTAG	2 cut(s)	411, 684
StyD4I	CCNGG	2 cut(s)	157, 599
TaaI	ACNGT	8 cut(s)	37, 172, 184, 193, 290, 370, 424, 538
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	5 cut(s)	113, 252, 320, 364, 680
TasI	AATT	2 cut(s)	195, 245
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	2 cut(s)	89, 608
TfiI	GAWTC	2 cut(s)	8, 622
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	456, 492
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	669
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	456, 492
VpaK11BI	GGWCC	4 cut(s)	146, 200, 286, 529
XapI	RAATTY	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	2 cut(s)	411, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.