Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008436.1

Orthogroup ID

OG0012392

Physical Location & Seq

Genomic Coordinates Reverse (-)

6091 .. 7127

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008436.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgtctcagtcggtcccgcggattctcttgcccccgatttggcgagacgcctataaattaggaatcgccgtaacgctcctctttcgtcttcaccgtttaagaatctctctttgttcaagtttgtcgggtttttcaaaaatggcagatgcggaatcttcacgcccaatcgatacggtgaattgcgatgagaagaagctcaagtatctggaatttgttgaagtcgcggcgatttatgccgtcctctgcttctcgagcctctacgagtacgcgaaggaaaacgccggtcctctgaaaccgggggttcagaccgtggaaggcaccgtcaaaacggtaatcggaccagtctaccacaagttccaggaccttcctttccagctcctcaaattcgtcgatcacaaggtcgacgagtcgctgagcgagttgcaccgtcacgtgccgtgcctggtaaagcaggcgtcgaacacggctctgtctgtggcgacggaagttaagcgagccgggttggtggacgcggcgcgtaacatcacggcgagcgcgtactcgaaatacgagccgatggcggaggaggtgtactacaagtacgagccggtggcggagcagttcgccgtctcggcttggcggtcgctgaatcggctgccgctggttcctcaggtggctcagattatggtccccacggcggcctattggtctgagaagtacaatcaggcggtctgtttcacggcggagagagggttccctgtggcggctcacctgccgttgattccgacggagaggattgcgaaggcgtttgaggaagccgagcatgtctctcccgccgtttcgacgaatgccggagccgtcgaactggaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

284

Amino Acids

31.6

Weight (kDa)

6.72

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47780
fragaria_vesca	FvH4_2g25450
malus_domestica	MD03G1285600.v1.1 MD11G1305000.v1.1
prunus_persica	Prupe.8G258700_v2.0.a1 Prupe.8G258700_v2.0.a1
pyrus_communis	pycom11g26680
rosa_chinensis	RchiOBHm_Chr6g0293681
rosa_laevigata	RLG00000011933
rosa_multiflora	Rmu_co8092110.1_g000001 Rmu_sc0008436.1_g000002 Rmu_sc0028689.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173990
rosa_rugosa	Rorug06G0237400
rosa_samantha	Rh6AG350000 Rh6BG357500 Rh6CG364300 Rh6DG351200
rosa_wichuraiana	Rw6G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	759
Acc36I	ACCTGC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	2 cut(s)	345, 402
AccII	CGCG	6 cut(s)	19, 224, 269, 512, 517, 536
AcsI	RAATTY	2 cut(s)	209, 383
AcvI	CACGTG	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	48, 455
AfaI	GTAC	5 cut(s)	266, 539, 572, 581, 698
AfiI	CCNNNNNNNGG	3 cut(s)	39, 676, 742
AgsI	TTSAA	3 cut(s)	117, 135, 218
AjnI	CCWGG	2 cut(s)	357, 441
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	2 cut(s)	196, 376
AluI	AGCT	2 cut(s)	196, 376
Alw26I	GTCTC	4 cut(s)	9, 39, 613, 811
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	2 cut(s)	209, 383
AspLEI	GCGC	2 cut(s)	517, 536
AspS9I	GGNCC	5 cut(s)	13, 284, 338, 361, 667
AsuC2I	CCSGG	2 cut(s)	297, 499
AsuHPI	GGTGA	3 cut(s)	83, 187, 740
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	5 cut(s)	13, 284, 338, 361, 667
AxyI	CCTNAGG	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	317
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	1 cut(s)	550
BciT130I	CCWGG	2 cut(s)	359, 443
BcnI	CCSGG	2 cut(s)	297, 499
BcoDI	GTCTC	4 cut(s)	9, 39, 613, 811
BfuAI	ACCTGC	1 cut(s)	759
BglI	GCCNNNNNGGC	1 cut(s)	611
BisI	GCNGC	6 cut(s)	225, 513, 635, 638, 678, 744
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	6 cut(s)	226, 514, 636, 639, 679, 745
Bme1390I	CCNGG	4 cut(s)	297, 359, 443, 499
Bme18I	GGWCC	5 cut(s)	13, 284, 338, 361, 667
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	5 cut(s)	13, 284, 338, 361, 667
BmiI	GGNNCC	6 cut(s)	15, 319, 645, 669, 734, 835
BmrFI	CCNGG	4 cut(s)	297, 359, 443, 499
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	2 cut(s)	297, 499
Bsa29I	ATCGAT	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	433
BsaHI	GRCGYC	2 cut(s)	48, 455
BsaJI	CCNNGG	4 cut(s)	17, 296, 309, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 716, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 676, 742
Bse118I	RCCGGY	2 cut(s)	281, 586
Bse1I	ACTGG	2 cut(s)	341, 849
Bse21I	CCTNAGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	359, 443
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	4 cut(s)	17, 296, 309, 672
BseLI	CCNNNNNNNGG	3 cut(s)	39, 676, 742
BseMII	CTCAG	5 cut(s)	20, 404, 662, 671, 681
BseNI	ACTGG	2 cut(s)	341, 849
BseRI	GAGGAG	3 cut(s)	68, 368, 578
BseXI	GCAGC	1 cut(s)	621
Bsh1236I	CGCG	6 cut(s)	19, 224, 269, 512, 517, 536
Bsh1285I	CGRYCG	1 cut(s)	623
BshFI	GGCC	1 cut(s)	680
BshNI	GGYRCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	623
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	5 cut(s)	282, 296, 498, 587, 831
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	39, 676, 742
BsmAI	GTCTC	4 cut(s)	9, 39, 613, 811
BsmBI	CGTCTC	2 cut(s)	39, 613
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	1 cut(s)	680
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	391
Bsp1720I	GCTNAGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	5 cut(s)	19, 405, 661, 670, 682
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	6 cut(s)	19, 224, 269, 512, 517, 536
BspLI	GGNNCC	6 cut(s)	15, 319, 645, 669, 734, 835
BspMI	ACCTGC	1 cut(s)	759
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	2 cut(s)	281, 586
BsrI	ACTGG	2 cut(s)	341, 849
BssAI	RCCGGY	2 cut(s)	281, 586
BssECI	CCNNGG	4 cut(s)	17, 296, 309, 672
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	2 cut(s)	48, 455
Bst2UI	CCWGG	2 cut(s)	359, 443
Bst4CI	ACNGT	6 cut(s)	95, 175, 310, 322, 331, 428
BstACI	GRCGYC	2 cut(s)	48, 455
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	453, 495, 532
BstDEI	CTNAG	5 cut(s)	6, 413, 648, 657, 690
BstDSI	CCRYGG	3 cut(s)	17, 309, 672
BstFNI	CGCG	6 cut(s)	19, 224, 269, 512, 517, 536
BstHHI	GCGC	2 cut(s)	517, 536
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	4 cut(s)	9, 39, 613, 811
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	1 cut(s)	623
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 252, 611, 631
BstNI	CCWGG	2 cut(s)	359, 443
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	4 cut(s)	295, 357, 441, 497
BstUI	CGCG	6 cut(s)	19, 224, 269, 512, 517, 536
BstV1I	GCAGC	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	680
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	3 cut(s)	17, 309, 672
BtgZI	GCGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	850
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	3 cut(s)	453, 495, 532
CfoI	GCGC	2 cut(s)	517, 536
Cfr10I	RCCGGY	2 cut(s)	281, 586
Cfr13I	GGNCC	5 cut(s)	13, 284, 338, 361, 667
Cfr42I	CCGCGG	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	3 cut(s)	56, 444, 518
Csp6I	GTAC	5 cut(s)	265, 538, 571, 580, 697
CviAII	CATG	1 cut(s)	803
CviQI	GTAC	5 cut(s)	265, 538, 571, 580, 697
DdeI	CTNAG	5 cut(s)	6, 413, 648, 657, 690
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EciI	GGCGGA	3 cut(s)	575, 608, 737
Eco47I	GGWCC	5 cut(s)	13, 284, 338, 361, 667
Eco72I	CACGTG	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	357, 441
Esp3I	CGTCTC	2 cut(s)	39, 613
FaeI	CATG	1 cut(s)	806
FaiI	YATR	4 cut(s)	54, 234, 665, 804
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	1 cut(s)	802
FauI	CCCGC	2 cut(s)	24, 820
FblI	GTMKAC	2 cut(s)	345, 402
Fnu4HI	GCNGC	6 cut(s)	225, 513, 635, 638, 678, 744
Fsp4HI	GCNGC	6 cut(s)	225, 513, 635, 638, 678, 744
GlaI	GCGC	2 cut(s)	516, 535
GluI	GCNGC	6 cut(s)	225, 513, 635, 638, 678, 744
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	5 cut(s)	282, 296, 498, 587, 831
HgaI	GACGC	3 cut(s)	56, 444, 518
HhaI	GCGC	2 cut(s)	517, 536
Hin1I	GRCGYC	2 cut(s)	48, 455
Hin1II	CATG	1 cut(s)	806
Hin6I	GCGC	2 cut(s)	515, 534
HinP1I	GCGC	2 cut(s)	515, 534
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	7 cut(s)	22, 63, 102, 152, 407, 628, 760
HpaII	CCGG	5 cut(s)	282, 296, 498, 587, 831
HphI	GGTGA	3 cut(s)	83, 187, 740
Hpy166II	GTNNAC	4 cut(s)	346, 403, 508, 571
Hpy188I	TCNGA	6 cut(s)	291, 306, 338, 660, 691, 765
Hpy188III	TCNNGA	2 cut(s)	206, 250
Hpy8I	GTNNAC	4 cut(s)	346, 403, 508, 571
Hpy99I	CGWCG	7 cut(s)	392, 407, 460, 484, 769, 826, 842
HpyAV	CCTTC	4 cut(s)	265, 308, 374, 775
HpyCH4III	ACNGT	6 cut(s)	95, 175, 310, 322, 331, 428
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 252, 611, 631
HpyF3I	CTNAG	5 cut(s)	6, 413, 648, 657, 690
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	2 cut(s)	48, 455
Hsp92II	CATG	1 cut(s)	806
HspAI	GCGC	2 cut(s)	515, 534
KspI	CCGCGG	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	4 cut(s)	81, 381, 595, 833
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	70, 428, 518
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	80, 147, 202
MluCI	AATT	4 cut(s)	56, 178, 209, 383
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	788
MseI	TTAA	2 cut(s)	98, 489
MspA1I	CMGCKG	2 cut(s)	19, 640
MspI	CCGG	5 cut(s)	282, 296, 498, 587, 831
MspR9I	CCNGG	4 cut(s)	297, 359, 443, 499
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	2 cut(s)	359, 443
MvnI	CGCG	6 cut(s)	19, 224, 269, 512, 517, 536
MwoI	GCNNNNNNNGC	4 cut(s)	233, 252, 611, 631
NciI	CCSGG	2 cut(s)	297, 499
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	806
NlaIV	GGNNCC	6 cut(s)	15, 319, 645, 669, 734, 835
NmeAIII	GCCGAG	2 cut(s)	590, 823
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	806
PaeR7I	CTCGAG	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	2 cut(s)	91, 533
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	6 cut(s)	22, 63, 102, 152, 628, 760
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	6 cut(s)	226, 514, 636, 639, 679, 745
PleI	GAGTC	1 cut(s)	415
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	357, 441
PspCI	CACGTG	1 cut(s)	433
PspGI	CCWGG	2 cut(s)	357, 441
PspN4I	GGNNCC	6 cut(s)	15, 319, 645, 669, 734, 835
PspPI	GGNCC	5 cut(s)	13, 284, 338, 361, 667
PspPPI	RGGWCCY	1 cut(s)	361
RsaI	GTAC	5 cut(s)	266, 539, 572, 581, 698
RsaNI	GTAC	5 cut(s)	265, 538, 571, 580, 697
SacII	CCGCGG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	98, 489
SatI	GCNGC	6 cut(s)	225, 513, 635, 638, 678, 744
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	5 cut(s)	13, 284, 338, 361, 667
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	4 cut(s)	297, 359, 443, 499
SetI	ASST	8 cut(s)	198, 366, 378, 402, 435, 570, 654, 753
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	250
Sfr303I	CCGCGG	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	5 cut(s)	13, 284, 338, 361, 667
SlaI	CTCGAG	1 cut(s)	250
SmlI	CTYRAG	2 cut(s)	197, 250
SmoI	CTYRAG	2 cut(s)	197, 250
Sse9I	AATT	4 cut(s)	56, 178, 209, 383
StyD4I	CCNGG	4 cut(s)	295, 357, 441, 497
TaaI	ACNGT	6 cut(s)	95, 175, 310, 322, 331, 428
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	8 cut(s)	168, 251, 390, 402, 458, 542, 821, 840
TasI	AATT	4 cut(s)	56, 178, 209, 383
TatI	WGTACW	2 cut(s)	570, 696
TauI	GCSGC	5 cut(s)	227, 515, 640, 680, 746
TfiI	GAWTC	6 cut(s)	22, 63, 102, 152, 628, 760
Tru1I	TTAA	2 cut(s)	98, 489
Tru9I	TTAA	2 cut(s)	98, 489
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	634
Tsp45I	GTSAC	1 cut(s)	428
TspGWI	ACGGA	2 cut(s)	497, 782
VpaK11BI	GGWCC	5 cut(s)	13, 284, 338, 361, 667
XapI	RAATTY	2 cut(s)	209, 383
XceI	RCATGY	1 cut(s)	806
XhoI	CTCGAG	1 cut(s)	250
XmiI	GTMKAC	2 cut(s)	345, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.