Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8092110.1

Orthogroup ID

OG0012392

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8092110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

gtcgacgagtcgctgagcgagttgcaccgtcacgtgccgtgcctggtaaagcaggcgtcgaacacggctctgtctgtggcgacggaagttaagcgagccgggttggtggacgcggcgcgtaacatcacggcgagcgcgtactcgaaatacgagccgatggcggaggaggtgtactacaagtacgagccggtggcggagcagtacgccgtctcggcttggcggtcgctgaatcggctgccgctggttcctcaggtggctcagattatggtccccacggcggcctattggtctgagaagtacaatcaggcggtctgtttcacggcggagagagggttccctgtggcggctcacctgccgttgattccgacggagaggattgcgaaggcgtttgaggaagccgagcatgtctctcccgccgtttcgacgaatgccggagccgtcgaactggaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

151

Amino Acids

16.63

Weight (kDa)

5.53

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47780
fragaria_vesca	FvH4_2g25450
malus_domestica	MD03G1285600.v1.1 MD11G1305000.v1.1
prunus_persica	Prupe.8G258700_v2.0.a1 Prupe.8G258700_v2.0.a1
pyrus_communis	pycom11g26680
rosa_chinensis	RchiOBHm_Chr6g0293681
rosa_laevigata	RLG00000011933
rosa_multiflora	Rmu_co8092110.1_g000001 Rmu_sc0008436.1_g000002 Rmu_sc0028689.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173990
rosa_rugosa	Rorug06G0237400
rosa_samantha	Rh6AG350000 Rh6BG357500 Rh6CG364300 Rh6DG351200
rosa_wichuraiana	Rw6G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	3
AccII	CGCG	3 cut(s)	113, 118, 137
AcvI	CACGTG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	5 cut(s)	140, 173, 182, 203, 299
AfiI	CCNNNNNNNGG	2 cut(s)	277, 343
AjnI	CCWGG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
Alw26I	GTCTC	2 cut(s)	214, 412
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	118, 137
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	9 cut(s)	22, 81, 144, 191, 291, 336, 340, 401, 422
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	214, 412
BfuAI	ACCTGC	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	5 cut(s)	114, 236, 239, 279, 345
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	5 cut(s)	115, 237, 240, 280, 346
Bme1390I	CCNGG	2 cut(s)	44, 100
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	4 cut(s)	246, 270, 335, 436
BmrFI	CCNGG	2 cut(s)	44, 100
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 343
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	277, 343
BseMII	CTCAG	4 cut(s)	5, 263, 272, 282
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	3 cut(s)	113, 118, 137
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	99, 188, 432
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	277, 343
BsmAI	GTCTC	2 cut(s)	214, 412
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	281
Bsp1720I	GCTNAGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	4 cut(s)	6, 262, 271, 283
BspFNI	CGCG	3 cut(s)	113, 118, 137
BspLI	GGNNCC	4 cut(s)	246, 270, 335, 436
BspMI	ACCTGC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	54, 96, 133
BstDEI	CTNAG	4 cut(s)	14, 249, 258, 291
BstDSI	CCRYGG	1 cut(s)	273
BstFNI	CGCG	3 cut(s)	113, 118, 137
BstHHI	GCGC	2 cut(s)	118, 137
BstMAI	GTCTC	2 cut(s)	214, 412
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 232
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	42, 98
BstUI	CGCG	3 cut(s)	113, 118, 137
BstV1I	GCAGC	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	54, 96, 133
CfoI	GCGC	2 cut(s)	118, 137
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	2 cut(s)	45, 119
Csp6I	GTAC	5 cut(s)	139, 172, 181, 202, 298
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	5 cut(s)	139, 172, 181, 202, 298
DdeI	CTNAG	4 cut(s)	14, 249, 258, 291
EciI	GGCGGA	3 cut(s)	176, 209, 338
Eco47I	GGWCC	1 cut(s)	268
Eco72I	CACGTG	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	407
FaiI	YATR	2 cut(s)	266, 405
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	114, 236, 239, 279, 345
Fsp4HI	GCNGC	5 cut(s)	114, 236, 239, 279, 345
GlaI	GCGC	2 cut(s)	117, 136
GluI	GCNGC	5 cut(s)	114, 236, 239, 279, 345
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	3 cut(s)	99, 188, 432
HgaI	GACGC	2 cut(s)	45, 119
HhaI	GCGC	2 cut(s)	118, 137
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	2 cut(s)	116, 135
HinP1I	GCGC	2 cut(s)	116, 135
HincII	GTYRAC	1 cut(s)	4
HindII	GTYRAC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	8, 229, 361
HpaII	CCGG	3 cut(s)	99, 188, 432
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	4, 109, 172
Hpy188I	TCNGA	3 cut(s)	261, 292, 366
Hpy8I	GTNNAC	3 cut(s)	4, 109, 172
Hpy99I	CGWCG	6 cut(s)	8, 61, 85, 370, 427, 443
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 232
HpyF3I	CTNAG	4 cut(s)	14, 249, 258, 291
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	2 cut(s)	116, 135
LmnI	GCTCC	2 cut(s)	196, 434
Lsp1109I	GCAGC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	29, 119
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	6 cut(s)	157, 160, 258, 323, 366, 385
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	3 cut(s)	99, 188, 432
MspR9I	CCNGG	2 cut(s)	44, 100
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	3 cut(s)	113, 118, 137
MwoI	GCNNNNNNNGC	2 cut(s)	212, 232
NciI	CCSGG	1 cut(s)	100
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	4 cut(s)	246, 270, 335, 436
NmeAIII	GCCGAG	2 cut(s)	191, 424
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	229, 361
PkrI	GCNGC	5 cut(s)	115, 237, 240, 280, 346
PleI	GAGTC	1 cut(s)	16
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	4 cut(s)	246, 270, 335, 436
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	5 cut(s)	140, 173, 182, 203, 299
RsaNI	GTAC	5 cut(s)	139, 172, 181, 202, 298
SalI	GTCGAC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	5 cut(s)	114, 236, 239, 279, 345
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	44, 100
SetI	ASST	4 cut(s)	36, 171, 255, 354
SinI	GGWCC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	42, 98
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	5 cut(s)	3, 59, 143, 422, 441
TatI	WGTACW	2 cut(s)	171, 297
TauI	GCSGC	4 cut(s)	116, 241, 281, 347
TfiI	GAWTC	2 cut(s)	229, 361
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	29
TspGWI	ACGGA	2 cut(s)	98, 383
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	3

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.