Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_192

Orthogroup ID

OG0003530

Physical Location & Seq

Genomic Coordinates Reverse (-)

3783 .. 4235

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGGGTGCGGATATTATTCCACCCGAGTTTCAAACTCGGGTGGGTGACCGCGGTTTGGTGTGGAGGGGTTGGGCCCCTCAACTTAAGATACTGGGTCACTCGTCGGTTGGGGGTTTCTTAACTCACTGTGGTTGGAGTTCGGTTATCGAGGCACTCGGGTTTGGAAGGGTGCTTATTTTGTTTTCCGGGGCAAATTCGGATCAAGGGTTGATTGCGAGATTGTTGCACGGGAAACAGGTCGGGTTGGAGATACCGAGGGACGAGCAAGATGGGTCATTTACGCGTGACTCAGTGGCTGAATTGACTCGCCGAGTGATGGTTGACAAAGAAGGTGAGTCACTCAGGTCAAATGCATGGGCCATGAAGGAGATTTTTGGCAACAAAGAGCTGAACAAGAAGTGCTTGGACGAGTTCACTCGGTTCCTTGAAACATGGCCAGCTTCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

151

Amino Acids

16.67

Weight (kDa)

6.3

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65550
fragaria_vesca	FvH4_1g07960 FvH4_1g07960
malus_domestica	MD02G1083100.v1.1 MD02G1083300.v1.1 MD02G1083600.v1.1 MD02G1083800.v1.1 MD02G1084000.v1.1 MD10G1101200.v1.1 MD15G1211400.v1.1
prunus_persica	Prupe.7G205500_v2.0.a1 Prupe.I002600_v2.0.a1
pyrus_communis	pycom02g06610 pycom02g06630 pycom02g06640 pycom15g18790
rosa_chinensis	RchiOBHm_Chr2g0093841 RchiOBHm_Chr2g0093861
rosa_laevigata	RLG00000013086 RLG00000016441
rosa_multiflora	Rmu_co8040598.1_g000001 Rmu_sc0003027.1_g000010 Rmu_sc0003027.1_g000014 Rmu_sc0017523.1_g000004 Rmu_sc0017523.1_g000009
rosa_roxburghii	Rroxscaffold_2G00147710 Rroxscaffold_2G00147760
rosa_rugosa	Rorug02G0040100 Rorug02G0040100
rosa_samantha	Rh2BG087200 Rh2BG087400 Rh2CG089600 Rh2CG089800 Rh2DG085300 Rh2DG085500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	54, 286
AciI	CCGC	3 cut(s)	11, 52, 54
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	58, 319
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	35, 431, 447
AluBI	AGCT	2 cut(s)	391, 443
AluI	AGCT	2 cut(s)	391, 443
AlwI	GGATC	1 cut(s)	210
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	3 cut(s)	26, 39, 158
AoxI	GGCC	3 cut(s)	75, 360, 437
ApaI	GGGCCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	3 cut(s)	75, 76, 360
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	59, 347
AvaI	CYCGRG	3 cut(s)	26, 39, 158
BaeGI	GKGCMC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	79
BccI	CCATC	2 cut(s)	266, 313
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BcnI	CCSGG	1 cut(s)	190
BfrI	CTTAAG	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	190
BmeT110I	CYCGRG	3 cut(s)	26, 39, 158
BmgT120I	GGNCC	3 cut(s)	75, 76, 360
BmiI	GGNNCC	3 cut(s)	77, 78, 425
BmrFI	CCNGG	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	52, 189, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 319
Bse1I	ACTGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	52, 189, 257
BseLI	CCNNNNNNNGG	2 cut(s)	58, 319
BseMII	CTCAG	2 cut(s)	306, 358
BseNI	ACTGG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	54, 286
BshFI	GGCC	3 cut(s)	77, 362, 439
BsiHKCI	CYCGRG	3 cut(s)	26, 39, 158
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	58, 319
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	77, 362, 439
BsoBI	CYCGRG	3 cut(s)	26, 39, 158
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	3 cut(s)	11, 52, 54
BspANI	GGCC	3 cut(s)	77, 362, 439
BspCNI	CTCAG	2 cut(s)	305, 357
BspFNI	CGCG	2 cut(s)	54, 286
BspLI	GGNNCC	3 cut(s)	77, 78, 425
BspPI	GGATC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	52, 189, 257
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	131
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	292, 344
BstDSI	CCRYGG	1 cut(s)	52
BstEII	GGTNACC	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	54, 286
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	2 cut(s)	54, 286
BsuRI	GGCC	3 cut(s)	77, 362, 439
BtgI	CCRYGG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	127, 300
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	75, 76, 360
Cfr42I	CCGCGG	1 cut(s)	55
CviAII	CATG	3 cut(s)	357, 364, 435
CviJI	RGCY	6 cut(s)	77, 299, 362, 391, 439, 443
CviKI_1	RGCY	6 cut(s)	77, 299, 362, 391, 439, 443
DdeI	CTNAG	2 cut(s)	292, 344
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	79
Eco88I	CYCGRG	3 cut(s)	26, 39, 158
Eco91I	GGTNACC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	360, 367, 438
FaiI	YATR	3 cut(s)	358, 365, 436
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	3 cut(s)	356, 363, 434
FriOI	GRGCYC	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	77, 362, 439
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	3 cut(s)	360, 367, 438
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	290, 307, 338
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	59, 347
Hpy166II	GTNNAC	2 cut(s)	325, 417
Hpy188I	TCNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	325, 417
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	162, 326, 361
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	229, 356
HpyF3I	CTNAG	2 cut(s)	292, 344
Hsp92II	CATG	3 cut(s)	360, 367, 438
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	80, 202, 224, 331
MaeIII	GTNAC	4 cut(s)	47, 98, 287, 339
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	2 cut(s)	196, 302
MluI	ACGCGT	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	3 cut(s)	284, 301, 347
MmeI	TCCRAC	2 cut(s)	116, 228
MnlI	CCTC	4 cut(s)	60, 90, 145, 252
Mox20I	TGGCCA	1 cut(s)	439
Mph1103I	ATGCAT	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	2 cut(s)	87, 122
Msp20I	TGGCCA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	190
MvnI	CGCG	2 cut(s)	54, 286
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	360, 367, 438
NlaIV	GGNNCC	3 cut(s)	77, 78, 425
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	4 cut(s)	47, 98, 287, 339
NsiI	ATGCAT	1 cut(s)	358
PleI	GAGTC	3 cut(s)	284, 301, 346
PpsI	GAGTC	3 cut(s)	284, 301, 346
PspEI	GGTNACC	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	77, 78, 425
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	75, 76, 360
PstNI	CAGNNNCTG	1 cut(s)	299
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	87, 122
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	3 cut(s)	75, 76, 360
SchI	GAGTC	3 cut(s)	284, 301, 347
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	243, 337, 350, 393, 445, 452
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	196, 302
SsiI	CCGC	3 cut(s)	11, 52, 54
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	196, 302
Tru1I	TTAA	2 cut(s)	87, 122
Tru9I	TTAA	2 cut(s)	87, 122
TscAI	CASTG	2 cut(s)	134, 300
TseFI	GTSAC	4 cut(s)	47, 98, 287, 339
Tsp45I	GTSAC	4 cut(s)	47, 98, 287, 339
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	134, 300
Vha464I	CTTAAG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.