Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8040598.1

Orthogroup ID

OG0003530

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 553

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8040598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 553 bp

atgcccgccgtcgacggccttcctcagtcggcggagtccaccgccgacatacccatcaacaaggtcccgtacctcaaaaaggcctacgacaagctcgagcttcctctcacgcattgtctcgaacattccgacgtcgactggatcgttcatgatttcgcgccccactggctaccccgagtggcgactcggctggggatcaactcggtttacttcaccatcgtcaatgccacttccatggccttctttggcccgccgtcggagcttctcgccggtcaacgccagcggccggaggacttcaccgtcgtccctgagtggatcgactttcctgattttaacgtggcgtttaagctgcatgagatggtcagtcactgggactccatggacgatgaagtctccgatttccggaggttggccggtgttattcaaggctgcgattttgtggccaccaggacctgtcccgagttcgacggcgactcactgagtttgctcccgatattgtacggcaaaccggtagttccggtcgggttgttgcccccggttttacaagaggacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

184

Amino Acids

20.62

Weight (kDa)

4.61

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65550
fragaria_vesca	FvH4_1g07960 FvH4_1g07960
malus_domestica	MD02G1083100.v1.1 MD02G1083300.v1.1 MD02G1083600.v1.1 MD02G1083800.v1.1 MD02G1084000.v1.1 MD10G1101200.v1.1 MD15G1211400.v1.1
prunus_persica	Prupe.7G205500_v2.0.a1 Prupe.I002600_v2.0.a1
pyrus_communis	pycom02g06610 pycom02g06630 pycom02g06640 pycom15g18790
rosa_chinensis	RchiOBHm_Chr2g0093841 RchiOBHm_Chr2g0093861
rosa_laevigata	RLG00000013086 RLG00000016441
rosa_multiflora	Rmu_co8040598.1_g000001 Rmu_sc0003027.1_g000010 Rmu_sc0003027.1_g000014 Rmu_sc0017523.1_g000004 Rmu_sc0017523.1_g000009
rosa_roxburghii	Rroxscaffold_2G00147710 Rroxscaffold_2G00147760
rosa_rugosa	Rorug02G0040100 Rorug02G0040100
rosa_samantha	Rh2BG087200 Rh2BG087400 Rh2CG089600 Rh2CG089800 Rh2DG085300 Rh2DG085500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	299, 389
AatII	GACGTC	1 cut(s)	135
AccI	GTMKAC	2 cut(s)	12, 135
AccII	CGCG	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	5 cut(s)	6, 32, 42, 251, 283
AclWI	GGATC	3 cut(s)	149, 203, 323
AcoI	YGGCCR	3 cut(s)	284, 411, 441
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	71, 500
AfiI	CCNNNNNNNGG	5 cut(s)	79, 256, 286, 402, 409
AgeI	ACCGGT	1 cut(s)	508
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	4 cut(s)	94, 100, 262, 349
AluI	AGCT	4 cut(s)	94, 100, 262, 349
Alw26I	GTCTC	2 cut(s)	122, 397
AlwI	GGATC	3 cut(s)	149, 203, 323
AlwNI	CAGNNNCTG	2 cut(s)	369, 453
Ama87I	CYCGRG	3 cut(s)	95, 174, 458
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	7 cut(s)	16, 81, 237, 247, 284, 411, 441
ApeKI	GCWGC	2 cut(s)	349, 429
AsiGI	ACCGGT	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	4 cut(s)	64, 248, 450, 550
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	205, 289
AvaI	CYCGRG	3 cut(s)	95, 174, 458
AvaII	GGWCC	3 cut(s)	64, 450, 550
BalI	TGGCCA	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	336, 416
BccI	CCATC	3 cut(s)	62, 224, 352
BceAI	ACGGC	4 cut(s)	31, 238, 484, 517
BciT130I	CCWGG	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	122, 397
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	284, 350, 430
BlsI	GCNGC	3 cut(s)	285, 351, 431
Bme1390I	CCNGG	2 cut(s)	448, 536
Bme18I	GGWCC	3 cut(s)	64, 450, 550
BmeT110I	CYCGRG	3 cut(s)	95, 174, 458
BmgT120I	GGNCC	4 cut(s)	64, 248, 450, 550
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	448, 536
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	234, 378, 534
BsaWI	WCCGGW	3 cut(s)	402, 508, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 256, 286, 402, 409
Bse118I	RCCGGY	3 cut(s)	269, 413, 508
Bse1I	ACTGG	3 cut(s)	143, 170, 374
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	234, 378, 534
BseLI	CCNNNNNNNGG	5 cut(s)	79, 256, 286, 402, 409
BseMII	CTCAG	3 cut(s)	38, 300, 470
BseNI	ACTGG	3 cut(s)	143, 170, 374
BseX3I	CGGCCG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	336, 416
BseYI	CCCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	2 cut(s)	287, 522
BshFI	GGCC	7 cut(s)	18, 83, 239, 249, 286, 413, 443
BshTI	ACCGGT	1 cut(s)	508
BsiEI	CGRYCG	2 cut(s)	287, 522
BsiHKCI	CYCGRG	3 cut(s)	95, 174, 458
BsiSI	CCGG	7 cut(s)	270, 287, 403, 414, 509, 518, 536
BslFI	GGGAC	4 cut(s)	50, 290, 386, 441
BslI	CCNNNNNNNGG	5 cut(s)	79, 256, 286, 402, 409
BsmAI	GTCTC	2 cut(s)	122, 397
BsmFI	GGGAC	4 cut(s)	50, 290, 386, 441
BsnI	GGCC	7 cut(s)	18, 83, 239, 249, 286, 413, 443
BsoBI	CYCGRG	3 cut(s)	95, 174, 458
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	141, 195, 315
Bsp19I	CCATGG	2 cut(s)	234, 378
BspACI	CCGC	5 cut(s)	6, 32, 42, 251, 283
BspANI	GGCC	7 cut(s)	18, 83, 239, 249, 286, 413, 443
BspCNI	CTCAG	3 cut(s)	37, 301, 471
BspEI	TCCGGA	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	3 cut(s)	149, 203, 323
BsrFI	RCCGGY	3 cut(s)	269, 413, 508
BsrI	ACTGG	3 cut(s)	143, 170, 374
BssAI	RCCGGY	3 cut(s)	269, 413, 508
BssECI	CCNNGG	3 cut(s)	234, 378, 534
BssMI	GATC	3 cut(s)	141, 195, 315
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	234, 378
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	6, 251, 281
BstDEI	CTNAG	3 cut(s)	24, 309, 479
BstDSI	CCRYGG	2 cut(s)	234, 378
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	144, 198, 318
BstMAI	GTCTC	2 cut(s)	122, 397
BstMBI	GATC	3 cut(s)	141, 195, 315
BstMCI	CGRYCG	2 cut(s)	287, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 259
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	446, 534
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	336, 416
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstZI	CGGCCG	1 cut(s)	284
BsuRI	GGCC	7 cut(s)	18, 83, 239, 249, 286, 413, 443
BtgI	CCRYGG	2 cut(s)	234, 378
BtsIMutI	CAGTG	3 cut(s)	163, 367, 476
Cac8I	GCNNGC	3 cut(s)	6, 251, 281
CaiI	CAGNNNCTG	2 cut(s)	369, 453
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	3 cut(s)	269, 413, 508
Cfr13I	GGNCC	4 cut(s)	64, 248, 450, 550
Csp6I	GTAC	2 cut(s)	70, 499
CspAI	ACCGGT	1 cut(s)	508
CviAII	CATG	4 cut(s)	149, 235, 353, 379
CviQI	GTAC	2 cut(s)	70, 499
DdeI	CTNAG	3 cut(s)	24, 309, 479
DpnI	GATC	3 cut(s)	143, 197, 317
DpnII	GATC	3 cut(s)	141, 195, 315
DrdI	GACNNNNNNGTC	2 cut(s)	299, 389
DseDI	GACNNNNNNGTC	2 cut(s)	299, 389
EaeI	YGGCCR	3 cut(s)	284, 411, 441
EagI	CGGCCG	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	47
EclXI	CGGCCG	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	234, 378
Eco147I	AGGCCT	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	64, 450, 550
Eco52I	CGGCCG	1 cut(s)	284
Eco88I	CYCGRG	3 cut(s)	95, 174, 458
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	64, 450
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	2 cut(s)	234, 378
ErhI	CCWWGG	2 cut(s)	234, 378
FaeI	CATG	4 cut(s)	152, 238, 356, 382
FaiI	YATR	5 cut(s)	50, 150, 236, 354, 380
FaqI	GGGAC	4 cut(s)	50, 290, 386, 441
FatI	CATG	4 cut(s)	148, 234, 352, 378
FauI	CCCGC	2 cut(s)	13, 258
FblI	GTMKAC	2 cut(s)	12, 135
Fnu4HI	GCNGC	3 cut(s)	284, 350, 430
Fsp4HI	GCNGC	3 cut(s)	284, 350, 430
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	284, 350, 430
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	7 cut(s)	18, 83, 239, 249, 286, 413, 443
HapII	CCGG	7 cut(s)	270, 287, 403, 414, 509, 518, 536
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	152, 238, 356, 382
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	3 cut(s)	13, 136, 275
HindII	GTYRAC	3 cut(s)	13, 136, 275
HinfI	GANTC	4 cut(s)	35, 184, 374, 473
HpaII	CCGG	7 cut(s)	270, 287, 403, 414, 509, 518, 536
HphI	GGTGA	2 cut(s)	205, 289
Hpy166II	GTNNAC	5 cut(s)	13, 39, 136, 208, 275
Hpy188I	TCNGA	3 cut(s)	130, 259, 397
Hpy188III	TCNNGA	6 cut(s)	119, 149, 326, 403, 458, 490
Hpy8I	GTNNAC	5 cut(s)	13, 39, 136, 208, 275
Hpy99I	CGWCG	7 cut(s)	14, 17, 134, 137, 259, 305, 470
HpyAV	CCTTC	2 cut(s)	29, 250
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	2 cut(s)	132, 336
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 259
HpyF3I	CTNAG	3 cut(s)	24, 309, 479
HpySE526I	ACGT	2 cut(s)	132, 336
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	152, 238, 356, 382
HspAI	GCGC	1 cut(s)	158
Kpn2I	TCCGGA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	141, 195, 315
LmnI	GCTCC	2 cut(s)	259, 492
Lsp1109I	GCAGC	2 cut(s)	336, 416
MaeII	ACGT	2 cut(s)	132, 336
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	143, 197, 317
MboI	GATC	3 cut(s)	141, 195, 315
MlsI	TGGCCA	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	4 cut(s)	44, 178, 368, 467
MmeI	TCCRAC	2 cut(s)	153, 237
MnlI	CCTC	6 cut(s)	33, 83, 114, 283, 399, 541
Mox20I	TGGCCA	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	333, 345
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	7 cut(s)	270, 287, 403, 414, 509, 518, 536
MspR9I	CCNGG	2 cut(s)	448, 536
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	166, 259
NciI	CCSGG	1 cut(s)	536
NcoI	CCATGG	2 cut(s)	234, 378
NdeII	GATC	3 cut(s)	141, 195, 315
NlaIII	CATG	4 cut(s)	152, 238, 356, 382
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 126, 141
PinAI	ACCGGT	1 cut(s)	508
PkrI	GCNGC	3 cut(s)	285, 351, 431
PleI	GAGTC	4 cut(s)	43, 178, 368, 467
PpsI	GAGTC	4 cut(s)	43, 178, 368, 467
PpuMI	RGGWCCY	2 cut(s)	64, 450
Psp5II	RGGWCCY	2 cut(s)	64, 450
Psp6I	CCWGG	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	4 cut(s)	64, 248, 450, 550
PspPPI	RGGWCCY	2 cut(s)	64, 450
PspXI	VCTCGAGB	1 cut(s)	95
PstNI	CAGNNNCTG	2 cut(s)	369, 453
RsaI	GTAC	2 cut(s)	71, 500
RsaNI	GTAC	2 cut(s)	70, 499
RseI	CAYNNNNRTG	1 cut(s)	233
SalI	GTCGAC	2 cut(s)	11, 134
SaqAI	TTAA	2 cut(s)	333, 345
SatI	GCNGC	3 cut(s)	284, 350, 430
Sau3AI	GATC	3 cut(s)	141, 195, 315
Sau96I	GGNCC	4 cut(s)	64, 248, 450, 550
SchI	GAGTC	4 cut(s)	44, 178, 368, 467
ScrFI	CCNGG	2 cut(s)	448, 536
Sfr274I	CTCGAG	1 cut(s)	95
SgrDI	CGTCGACG	1 cut(s)	11
SinI	GGWCC	3 cut(s)	64, 450, 550
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	5 cut(s)	6, 32, 42, 251, 283
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	446, 534
StyI	CCWWGG	2 cut(s)	234, 378
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	2 cut(s)	135, 339
TaqI	TCGA	6 cut(s)	12, 96, 120, 135, 318, 465
TauI	GCSGC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	333, 345
Tru9I	TTAA	2 cut(s)	333, 345
TscAI	CASTG	3 cut(s)	170, 374, 483
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	349, 429
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	137, 402
TspRI	CASTG	3 cut(s)	170, 374, 483
VpaK11BI	GGWCC	3 cut(s)	64, 450, 550
XagI	CCTNNNNNAGG	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	2 cut(s)	12, 135
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.