Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

OG0003530

Physical Location & Seq

Genomic Coordinates Reverse (-)

44253 .. 44636

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003027.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcacgagttggcacttgggatagagaaatccgggttgtgttttatttgggtgttgggcaatcgtcaattagccgaaggactggatatgattccggtcgggtttgagacccgggttggggaccggggtttggtgtccaggggttgggctccacaacttagggttttggcccacccctcgattgggggtttcttgactcattgtggttggagttcagtgattgaggcacttgagtttggtcgggtcttgattttattttctggggcgagttcagaccaagggttgattgcgagactgatgcacaacaagcggttggggttggaaataccaagagcaagttcacccgttggatcaccgggtcacctactattcactgctttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

127

Amino Acids

13.72

Weight (kDa)

7.91

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65550
fragaria_vesca	FvH4_1g07960 FvH4_1g07960
malus_domestica	MD02G1083100.v1.1 MD02G1083300.v1.1 MD02G1083600.v1.1 MD02G1083800.v1.1 MD02G1084000.v1.1 MD10G1101200.v1.1 MD15G1211400.v1.1
prunus_persica	Prupe.7G205500_v2.0.a1 Prupe.I002600_v2.0.a1
pyrus_communis	pycom02g06610 pycom02g06630 pycom02g06640 pycom15g18790
rosa_chinensis	RchiOBHm_Chr2g0093841 RchiOBHm_Chr2g0093861
rosa_laevigata	RLG00000013086 RLG00000016441
rosa_multiflora	Rmu_co8040598.1_g000001 Rmu_sc0003027.1_g000010 Rmu_sc0003027.1_g000014 Rmu_sc0017523.1_g000004 Rmu_sc0017523.1_g000009
rosa_roxburghii	Rroxscaffold_2G00147710 Rroxscaffold_2G00147760
rosa_rugosa	Rorug02G0040100 Rorug02G0040100
rosa_samantha	Rh2BG087200 Rh2BG087400 Rh2CG089600 Rh2CG089800 Rh2DG085300 Rh2DG085500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	358
AfiI	CCNNNNNNNGG	6 cut(s)	117, 118, 130, 144, 182, 183
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	322, 354
Alw26I	GTCTC	2 cut(s)	101, 286
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	121, 169
AsuC2I	CCSGG	5 cut(s)	34, 112, 113, 125, 357
AsuHPI	GGTGA	3 cut(s)	333, 345, 353
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	5 cut(s)	34, 112, 113, 125, 357
BcoDI	GTCTC	2 cut(s)	101, 286
Bme1390I	CCNGG	6 cut(s)	34, 112, 113, 125, 139, 357
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	121, 169
BmiI	GGNNCC	2 cut(s)	122, 150
BmrFI	CCNGG	6 cut(s)	34, 112, 113, 125, 139, 357
BmsI	GCATC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	5 cut(s)	34, 112, 113, 125, 357
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	111, 124, 138, 277
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 118, 130, 144, 182, 183
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	4 cut(s)	111, 124, 138, 277
BseLI	CCNNNNNNNGG	6 cut(s)	117, 118, 130, 144, 182, 183
BseNI	ACTGG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	5 cut(s)	33, 95, 112, 124, 356
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	6 cut(s)	117, 118, 130, 144, 182, 183
BsmAI	GTCTC	2 cut(s)	101, 286
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	350
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	122, 150
BspPI	GGATC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	4 cut(s)	111, 124, 138, 277
BssMI	GATC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	158
BstEII	GGTNACC	1 cut(s)	359
BstKTI	GATC	1 cut(s)	353
BstMAI	GTCTC	2 cut(s)	101, 286
BstMBI	GATC	1 cut(s)	350
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	139
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	6 cut(s)	32, 110, 111, 123, 137, 355
BsuRI	GGCC	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	222, 372
Cfr13I	GGNCC	2 cut(s)	121, 169
Cfr9I	CCCGGG	1 cut(s)	111
CviJI	RGCY	3 cut(s)	74, 149, 170
CviKI_1	RGCY	3 cut(s)	74, 149, 170
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	277
FaiI	YATR	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	5 cut(s)	33, 95, 112, 124, 356
HinfI	GANTC	2 cut(s)	91, 196
HpaII	CCGG	5 cut(s)	33, 95, 112, 124, 356
HphI	GGTGA	3 cut(s)	333, 345, 353
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	193, 247
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	4, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	9 cut(s)	46, 68, 108, 124, 125, 137, 151, 246, 369
LweI	GCATC	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	3 cut(s)	188, 300, 328
MnlI	CCTC	2 cut(s)	187, 217
MspI	CCGG	5 cut(s)	33, 95, 112, 124, 356
MspR9I	CCNGG	6 cut(s)	34, 112, 113, 125, 139, 357
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	307
NciI	CCSGG	5 cut(s)	34, 112, 113, 125, 357
NdeII	GATC	1 cut(s)	350
NlaIV	GGNNCC	2 cut(s)	122, 150
NmuCI	GTSAC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	144
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	122, 150
PspPI	GGNCC	2 cut(s)	121, 169
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	2 cut(s)	121, 169
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	6 cut(s)	34, 112, 113, 125, 139, 357
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	288
SinI	GGWCC	1 cut(s)	121
SmaI	CCCGGG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	310
StyD4I	CCNGG	6 cut(s)	32, 110, 111, 123, 137, 355
StyI	CCWWGG	1 cut(s)	277
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	2 cut(s)	222, 379
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspMI	CCCGGG	1 cut(s)	111
TspRI	CASTG	2 cut(s)	222, 379
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmaI	CCCGGG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.