pycom01g01000

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
1015894 .. 1016172
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01000.1

Sequence Viewer

Length: 279 bp
ATGGAGGTTGGGAATCTGCCAATGCCGTGGGTTTTGGGAACCAAAATCAACCACGCCATGATCCATACTCTAATACCTACAATCAGGGTTGGAGGGACCATCCAAATTTCAAATGGCGGGATCCTCAACAACCCCAACAACAAGGAGGATTTAGGCAGCAACCACCGGGCTTTTATACAAAGCCATTCATCCCCAATCAAAACCAAGTGCAATCTGCCCCAACAACCTCAGGTATGTCTTTGGATAATGATCAAGTTGTTAAGTTACTTACTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

9.51

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AclWI GGATC 3 cut(s) 55, 115, 128
AcsI RAATTY 1 cut(s) 105
AgsI TTSAA 1 cut(s) 111
AlwI GGATC 3 cut(s) 55, 115, 128
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 96
AxyI CCTNAGG 1 cut(s) 228
BamHI GGATCC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 10
BclI TGATCA 1 cut(s) 249
BcnI CCSGG 1 cut(s) 167
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 40, 97, 122
BmrFI CCNGG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 26
Bse21I CCTNAGG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 99, 188
BseJI GATNNNNATC 1 cut(s) 248
BseMII CTCAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
Bsp143I GATC 3 cut(s) 60, 120, 249
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 40, 97, 122
BspPI GGATC 3 cut(s) 55, 115, 128
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 3 cut(s) 60, 120, 249
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 99, 188
BstKTI GATC 3 cut(s) 63, 123, 252
BstMBI GATC 3 cut(s) 60, 120, 249
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 99, 188
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 170, 183
CviKI_1 RGCY 2 cut(s) 170, 183
DdeI CTNAG 1 cut(s) 228
DpnI GATC 3 cut(s) 62, 122, 251
DpnII GATC 3 cut(s) 60, 120, 249
Eco47I GGWCC 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 228
FaeI CATG 1 cut(s) 61
FaiI YATR 4 cut(s) 59, 66, 176, 235
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 2 cut(s) 86, 175
Fsp4HI GCNGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 157
HapII CCGG 1 cut(s) 166
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 60, 120, 249
LpnPI CCDG 3 cut(s) 70, 179, 215
Lsp1109I GCAGC 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 62, 122, 251
MboI GATC 3 cut(s) 60, 120, 249
MflI RGATCY 1 cut(s) 120
MluCI AATT 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 86, 134, 139, 237
MseI TTAA 1 cut(s) 260
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 167
NciI CCSGG 1 cut(s) 167
NdeII GATC 3 cut(s) 60, 120, 249
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 3 cut(s) 40, 97, 122
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 40, 97, 122
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 120
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 60, 120, 249
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 167
SetI ASST 4 cut(s) 9, 79, 229, 234
SinI GGWCC 1 cut(s) 96
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 165
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.