pycom12460g00030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012460
OG0018530
Physical Location & Seq
Reverse (-)
15808 .. 18933
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12460g00030.2

Sequence Viewer

Length: 336 bp
ATGGCCGAAGGAATGAAGATCCATAGTCCAATTGTATGTGGCGTATGTTCTATTCAAGGTCATCCTTCGGAAAAGTGCCCTCAATTGATTGAGAATGGTGGTGGGAGAGTGCAAACGCCATTGGATTTCCAAGCCAAAATCAACCAAGGAATGATCCATATTCCAATACATACAATCCAGGTTGGAGAGACCATCCAAACTTCAAGTGGAGGGAGCCTCAACAACCTTACCAACAAGGAGGCTTTAGGCAGCAACCCTCGGGGTTTTACACCAAAACCCACGGCCAAGACCAAACCCAACCCCAATCCGCCCAAAACCATCAAGGTACGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.83

Weight (kDa)

9.61

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AclWI GGATC 2 cut(s) 13, 148
AcoI YGGCCR 2 cut(s) 3, 282
AfaI GTAC 1 cut(s) 327
AgsI TTSAA 2 cut(s) 56, 204
AjnI CCWGG 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 13, 148
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 2 cut(s) 3, 282
ApeKI GCWGC 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 200, 326
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 182
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 145, 257, 279
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 145, 257, 279
BseGI GGATG 2 cut(s) 61, 192
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 2 cut(s) 5, 284
BsiHKCI CYCGRG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 2 cut(s) 5, 284
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 18, 153
BspACI CCGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 5, 284
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 2 cut(s) 13, 148
BspTNI GGTCTC 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 145, 257, 279
BssMI GATC 2 cut(s) 18, 153
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 61, 192
BstKTI GATC 2 cut(s) 21, 156
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 18, 153
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 2 cut(s) 5, 284
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 61, 192
Csp6I GTAC 1 cut(s) 326
CviJI RGCY 5 cut(s) 5, 134, 216, 242, 284
CviKI_1 RGCY 5 cut(s) 5, 134, 216, 242, 284
CviQI GTAC 1 cut(s) 326
DpnI GATC 2 cut(s) 20, 155
DpnII GATC 2 cut(s) 18, 153
EaeI YGGCCR 2 cut(s) 3, 282
EciI GGCGGA 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 5 cut(s) 24, 37, 46, 159, 171
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 2 cut(s) 48, 179
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
HaeIII GGCC 2 cut(s) 5, 284
Hpy188I TCNGA 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 328
Kzo9I GATC 2 cut(s) 18, 153
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 2 cut(s) 164, 191
Lsp1109I GCAGC 1 cut(s) 261
MaeII ACGT 1 cut(s) 328
MalI GATC 2 cut(s) 20, 155
MboI GATC 2 cut(s) 18, 153
MboII GAAGA 1 cut(s) 28
MfeI CAATTG 2 cut(s) 30, 83
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 2 cut(s) 30, 83
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 90, 203, 227, 232, 267
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 2 cut(s) 30, 83
MvaI CCWGG 1 cut(s) 179
NdeII GATC 2 cut(s) 18, 153
NlaIV GGNNCC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 18, 153
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 80
SetI ASST 5 cut(s) 61, 183, 228, 327, 331
Sse9I AATT 2 cut(s) 30, 83
SsiI CCGC 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 145
TaiI ACGT 1 cut(s) 331
TasI AATT 2 cut(s) 30, 83
TseI GCWGC 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.