pycom01g04480

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007947
Physical Location & Seq
Forward (+)
3344277 .. 3351148
6872 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 5256 bp
ATGAAGATTAAGAGATCGAACGGTTTCAATTATTTTGGAATCTTTTCAGGCACATCTGAGTCAAGTTTTGAAATTTTATTCCTGTGTTTCAGGTTTCCGGTAAATGGGTTGGGCAGCCTCTTCAGTTGCAGTCAATTTCTCTGCCTCTCTTTTTTACTTTATGGTTTTCTACTTATGCTGTTTCAACTTAATGCCCGACGATTGGTACGAATAATGATATACGCGTGTGAACTCATGAACACAAAATCTCTTATTGCTTGTTTGAGCTCATCCAAGTTATACCAAGTTATAGCAGCAGGCTGGCTTGACAACAGTTGGGTTTGTAGAGAGGTTATTTCCGATTCGAACCCTACGCCAAACCTTTTTGCCTTGGTTAGCTTGGTTTGCAATAAGTTGAGTGAAGGGGACAAAAATTGCACTCCATGCTTGCAACATCCTCCCCTTGGGAACAACCATGAAGGTCATGTTGTCGAGGCTGGTGGTCTACTTAGTAATTTACTAAGAAAACAAAAAGAAATTTCTCTAGGTGTTATATGGTGCTTCATTTCTTTAGGCAGATTTCATTTGATCATATACTGTATAGGTTGGCCTAGTCATTTTATTTCCTATGCTGGGTTTTTAAGAGAGAGATCGCTTGGTCAAGCTTCTAAGGCAATTGCTACTGAGTATAGCCACTCCTTTACATGGCAAGGTTGGAAGAAGTCCTCTGAATGCAGCTCATGTCCCTACATTACTGGGAACTGGTTCCTTCTCCTCTCTGATTCTCGATTGGTGTTTTTTTCTGCTTGTGGATATATTGAAATCTTCTGTATCACTAATAAATTACTTGAAAAGATGATTGTCTTGATTTACAGTGGTAAATACCCTTCCTCACGATGTCCTTTTAAGAAATATGAATTTCTGCTGTACCTTTTCTATGACTGCCTGGGACATAACAGTTATCTAACGTGTTGTGTTTGTGTAACACCTATAAGATCCCTCTTAACCTATTGCATCTTTGAAAGTTCTGTCTTTCCTGCTCATAGGAATGTTTGGCTCAAATACTTTTTTGGTTGTAGGCTGCTTCATGACCTTTTCTTTTTCACTACCTTGTATCTTTTCAGGTTCCAGACATTAGGTTTCTTCATATGTGATAGGGATAAGGAAAATAAGAGAGTTAAGCCCCTGCCTGCGCACCTGCGTTGGCCTTGCATGCAGGCTGATCAAGTTCATGGGCTTAGTTTAAGGGAAATTGGAGGAGGTTTCACAAAGCATCATCGAGCTCCATCCATTCGCTCTGCGTGTTATGCGATTGCTAAACCATCAAATATGGTGCAGAAGATGAACAACAAAAAGAAGCTACAGGGGTCACCTAAACAATTTATTTTCTGGGGGCATCATAATGCTGTCTGCTGTGGTATGGCTCACTTGAAACAAATTATTTTCTGGGAGTTTGATTTCTTAAGGGCATATAGACACTATCCAAGCATTTTCCTTTTTGTGTTTGTAGGGAGTTTTAAACATTTTCCGGTTCCTTCTACTGATATTATCTCCATGTGTTCCATAATACATAATTACATTTACATTTTGCACTTTGTATATGAATTTGGGAATTTGTATTACTATGAACTTTTTGCGAAAAATATGACCGACGTTATCACGGGTGCAGATCGATCGGCTTGTGAAGATATGGTCAATGGAAACTGCACTTTGCTTGGCTATCTACAAACTCTTTCTTTCTCTCACCCTCTATCGGTCTATCCCCCAAACACCCGCCCTCTCCTCCTCCTCCCTCCCTCCCTCCCTCCCTGTTTGGGGGGCTTCATTTGTTATACTGACTTGGCTGTAAGTTCGAACAATGCTTTGGTGGCATCTGCTTCAAATGACTTTTCCATTCGAGTTGTATGTATACCCTACCATTTAACATGTCAGTTTGGCTTCTTTTCTTATGTATCAGGATTTCCAATTTCAGTTCTTCAGGGGCATACTGGGGCTGTGACTGCTATTGCTTTTAGTACCAGGTTTAGTGCTGTTTACCAACTTTTTTTTTCCCCCTTTCCCTGGTTGTATCCTGAGTTAATGACATTTGTAGGTCATCAGATGATGGGACTTGTCGAATCTGGGATGCTAGGTCCTCCCAATGCCCGCTATAATGCTTCTGAAACTGTTGCCTTATTTGGGCGATGGGACTTACATCAAGTGATGTTTACTCGCAGGGAAGAGCAATGCTATTTCAATCACTGGACCCTCCTCGAGCAATGGTCCACAGAGCCATCAAATACTTTGTTGTGCTTACAACGCCAATGGGACTGTTTTTGTCACAGTTTAACATTAGTTCATATGATTAGTCCACAGCTGCCTTTTGATTTTTTACCAAAACCAAACTACTTGCAGGTCTGGAATGCTTTAAAATCTAATACAGATAACTCAGAACAATCAATACATGAGATGGATGTACTGGCAGGCCACGAGAATGACGTGAATTATGTCCAATTCAGGTTTGTTGTCCTAATTGAAGAGGAGAAAGGAAATATTAGCACCAGTTCTTCTGGTGATCCAGACTGCAGTGAAGAAGACAGTGAACCTGGATGCAGTCATAAGGATGGCCATCGTCGATCAAGGAGAAAAAGACCAAGGGTAAAAATGCTCTATCTATCTTTAGATTCTATACCAGTTGAGTCTTCTGAGAGGCGTGTCAAGAAAAAGAGAGTGGGCGAGCATGATCGCGTTTTATTTGGGATTAAAAGAACTAAAAATTCAAAAGGTGGCCAGAAAGTTTCAAAGAGGAAGTCTTCTAGAGCAAAGACATTGAGACCCCAGCGAGTAGCAGCATGCAATGCTCGAACTGTGTTTTCTCAGAACCCTGGAACATCTACAGAAGGAGAAGAAGATGATTGGGAAGATGATTCATCGAATAGTGAGTCTCTTCAGCAAGAATTCCACACTCAAAACGATGATGGGGACTTCCAGATAATGCAACAAAACCATACTAAAGAAGAACCATCTCGACATGAGTTTGGCAATATAGTGAAGCATCGTGTAGTTTGTTCGTCTCAGTCAAACGTCAGAAGCATGCCAAAATTGGTTTTTAAGATTAAGAAGCAAGAGGCTCCAAAGGATGTAAAACTCAAAGATGTCACTCCAGATAACAGGATTATTAACAGCTCTGTGGATCCAGATTCCTCTTCGGTGGATGTGGTTGACCTAAAGTTTTCAAGAAATCTCTTAGGCAATGATTTGACAGATACTGGGGAAACTATAAAGACAGAGAATTCATTGGAAGCATCCGCAAATTACCAGGATAGCAGAGTCAGATTGGAAGCAGCTAGTTGTAATGTCCATATAGAAGAGATGAATAATGTGCATCGGTATGTTAATCCTGAGAATAATTGTGAACAATTTTGTAATCATTCAAAAATTAAGGGAAGGGAAAATTATGAAGGTGTCTTGCGTTGCAGGGATGAGGAACATACTGGAACACGTGCATTTGAGCGATCGATCTGGATGGTCTCAAAAGTAGAGAGCTTTGTCATACTGACGAGGCCCTTGTATCTTCATCATTTGATTACTCAGCTTTGGGCGAGCACAAACAAAAAGGAATCGAGGGGAGTTTTTCCTGCACAAAACTCCACAAATTCTAGAGATTTAATCCCCAATGATTCTTCAAGCATGGATCCAAATTCAAATTTTGGGGTACGGAAAGTGGGTGGAGGTGCTGGCAGATCAACTTCTTTCAAGTTTGCAAAATATGCAATAAATATCAACGACCATCATGATTCAGGAAAGGATCTCCCCGCAGCTGCAACCAATGCAATACGTGGAACAAGAACCTTTAAGATCAAAGCAACTTCACGGAAGGTGGACTCTGTGAGTAGGTCGAATCACATGAGTTTCCCGATAAAACCCATTTGTCTTGTTAGTTTGTGGGAATTGGAATTCAAAGCTCCAATTATCATTAGGAAAGACGTAATCATTCTGAAACTGTTTTCTATCATCAAGCTGTTCAGAAGGCGCATTCTTAATCCATTATCGGTTGTTTGGTGTGATGTGCATCAAAATCTGTTCCGAAATGATAATTATATTTGCCAGAAGATTTTCTCAACTACTGTTGTGATTAATTTAAGAAATTATGTTATAGGGGTTTGCTTGTGCTTCTGTACGCAGGTGATTCAAGGAGATGTGCTCAAGACTGAGGAGCTTCCCTATTTCGATATACGTGTGGCAAACATCCCTTATCAAATCTCATCTCCCTTGACCTTCGAGTTACTGAAGCACCAACCTGCTTTCCCATGTGCCATTATAATGTTTCAGAGGGAAAGTCTCATTGCACATCCCCGTGACAAGCTCTATTGTCGTCTTACCATCAACACCCAACTCTTGTCCCGGGTATCTCACCTCCTCAAAGTTGGAAGGAACAATTTTCGCCCCCCGCCTAAGGTGGATTCTTCTGTCGAGTGGGATGGCTTTTTGCGGATCTGTCTCAATAGGAAAAACAAAACCCTTGGCTCAATTTTTAGGCAGAAAAGTGTCATCAATTTGCTCGAGAAGAATTACAAGACCCTGCAGGCGCTTAATCCTGCAACAGCCCAAGAAGAGGATACTAATGATGTGATGGAGTTTATGGATGAGGACATGGAGATGGATGATGATGGGATGGAGATGGAGGTGGAGGGTGTTAATGCGGAAGGGGAGATATCCGAATTCAAGAAAAAGGTGCTGGATTTGTTGAAGAAGTCTGGTTTTGAAGGCGAAAGGTCCTCCAAGCTCAAATTACAGCAATTTTTAGACCTACTTTCCCGGTTAACAAGGATGACATACACTTCATCTGATCTTAGGATCCAGTGTTATATTTCTTACAAGATTATTATACATTTTACTCAACCCAATTCTGTTAGGTTGCATCAAGTCTTTCTCTTGTTTTATTTATATACGTCGGATGTCCGATGGTTCTCCAAAGAATGCAGACATGAGATTTCACGGTTTTTAGTCGATTTTTCGAATTACTACAAAATCCCGCACCATTTTGAATCGGTAGTGTCATTGATTAATCTAATTGGATTCAATCGTCTACCACTGCGATGCATCTCCTCAAGGAAAAAGACGGTAACGACAGACATTTGCCTTCTTTTTATTTTGTTTGAACGGAACACATTGGTGGTATGCCAATTGAAATGCAGGTGCATCTGGTCCGCCTTCCATACGTCTCATTTGACACGAAACTTCAAATTGCAACGAAAAGAAATAAAGATTAACCGATTACGATACAAAGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1752

Amino Acids

201.24

Weight (kDa)

8.93

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RrnaAD PF00398 1381 - 1531 9e-18 Ribosomal RNA adenine dimethylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4280
AarI CACCTGC 3 cut(s) 1185, 4132, 5145
Acc16I TGCGCA 1 cut(s) 1173
Acc36I ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
AccI GTMKAC 3 cut(s) 484, 1888, 5047
AccII CGCG 2 cut(s) 224, 2706
AciI CCGC 9 cut(s) 1753, 2125, 3267, 3774, 4409, 4450, 4661, 4994, 5169
AcoI YGGCCR 2 cut(s) 2584, 2746
AcuI CTGAAG 4 cut(s) 106, 1940, 2891, 4268
AcvI CACGTG 1 cut(s) 3461
AfaI GTAC 6 cut(s) 207, 908, 1996, 2436, 3675, 4138
AflII CTTAAG 1 cut(s) 1441
AflIII ACRYGT 5 cut(s) 222, 947, 1904, 3458, 4195
AjiI CACGTC 1 cut(s) 2458
AjnI CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
AjuI GAANNNNNNNTTGG 2 cut(s) 1826, 1858
AleI CACNNNNGTG 1 cut(s) 5132
Alw21I GWGCWC 4 cut(s) 269, 1264, 3566, 4164
Alw26I GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
AlwNI CAGNNNCTG 1 cut(s) 3227
Ama87I CYCGRG 3 cut(s) 2231, 4362, 4520
AoxI GGCC 6 cut(s) 587, 1184, 2443, 2584, 2746, 3521
ApeKI GCWGC 9 cut(s) 114, 293, 714, 1060, 2335, 2807, 3302, 3776, 3779
ArsI GACNNNNNNTTYG 4 cut(s) 2753, 2785, 2885, 2917
AseI ATTAAT 2 cut(s) 4095, 5025
Asp700I GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
AspLEI GCGC 3 cut(s) 1174, 3993, 4549
AspS9I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
AsuC2I CCSGG 3 cut(s) 4363, 4364, 4777
AsuHPI GGTGA 5 cut(s) 1341, 1715, 2543, 4156, 4364
AsuII TTCGAA 3 cut(s) 344, 1832, 4976
AvaI CYCGRG 3 cut(s) 2231, 4362, 4520
AvaII GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
AxyI CCTNAGG 1 cut(s) 4413
BalI TGGCCA 2 cut(s) 2586, 2748
BamHI GGATCC 3 cut(s) 3151, 3652, 4815
BanII GRGCYC 2 cut(s) 269, 1264
BarI GAAGNNNNNNTAC 2 cut(s) 850, 882
BauI CACGAG 1 cut(s) 2447
BbrPI CACGTG 1 cut(s) 3461
BbsI GAAGAC 3 cut(s) 2559, 2652, 2763
Bbv12I GWGCWC 4 cut(s) 269, 1264, 3566, 4164
BbvI GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
BcgI CGANNNNNNTGC 2 cut(s) 1635, 1669
BciT130I CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
BciVI GTATCC 2 cut(s) 2058, 4570
BclI TGATCA 2 cut(s) 567, 1201
BcnI CCSGG 3 cut(s) 4363, 4364, 4777
BcoDI GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
BfaI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
BfmI CTRYAG 4 cut(s) 1340, 2542, 2853, 4541
BfoI RGCGCY 1 cut(s) 4550
BfrI CTTAAG 1 cut(s) 1441
BfuAI ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
BfuI GTATCC 2 cut(s) 2058, 4570
BisI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
BlsI GCNGC 9 cut(s) 116, 295, 716, 1062, 2337, 2809, 3304, 3778, 3781
Bme1390I CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
Bme18I GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
BmeT110I CYCGRG 3 cut(s) 2231, 4362, 4520
BmgBI CACGTC 1 cut(s) 2458
BmgT120I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
BmiI GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
BmrFI CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
BmrI ACTGGG 3 cut(s) 744, 1977, 3237
BmuI ACTGGG 3 cut(s) 744, 1977, 3237
BpiI GAAGAC 3 cut(s) 2559, 2652, 2763
BplI GAGNNNNNCTC 2 cut(s) 4146, 4178
BpmI CTGGAG 1 cut(s) 3105
Bpu14I TTCGAA 3 cut(s) 344, 1832, 4976
BpuEI CTTGAG 2 cut(s) 4148, 5053
BpuMI CCSGG 3 cut(s) 4363, 4364, 4777
Bsa29I ATCGAT 2 cut(s) 1651, 3476
BsaAI YACGTR 3 cut(s) 3461, 3797, 4196
BsaBI GATNNNNATC 2 cut(s) 2586, 4029
BsaI GGTCTC 2 cut(s) 2785, 3493
BsaJI CCNNGG 8 cut(s) 369, 442, 925, 2039, 2612, 2842, 4362, 4480
BsaWI WCCGGW 2 cut(s) 97, 1507
Bse21I CCTNAGG 1 cut(s) 4413
Bse3DI GCAATG 5 cut(s) 2210, 2243, 2821, 3217, 4302
Bse8I GATNNNNATC 2 cut(s) 2586, 4029
BseBI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
BseCI ATCGAT 2 cut(s) 1651, 3476
BseDI CCNNGG 8 cut(s) 369, 442, 925, 2039, 2612, 2842, 4362, 4480
BseJI GATNNNNATC 2 cut(s) 2586, 4029
BseMI GCAATG 5 cut(s) 2210, 2243, 2821, 3217, 4302
BseXI GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
BseYI CCCAGC 2 cut(s) 611, 2796
BsgI GTGCAG 4 cut(s) 1334, 1665, 1669, 3582
Bsh1236I CGCG 2 cut(s) 224, 2706
Bsh1285I CGRYCG 2 cut(s) 1655, 3476
BshFI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
BshVI ATCGAT 2 cut(s) 1651, 3476
BsiEI CGRYCG 2 cut(s) 1655, 3476
BsiHKAI GWGCWC 4 cut(s) 269, 1264, 3566, 4164
BsiHKCI CYCGRG 3 cut(s) 2231, 4362, 4520
BsiSI CCGG 4 cut(s) 98, 1508, 4363, 4777
BslFI GGGAC 8 cut(s) 419, 708, 942, 2100, 2180, 2300, 2954, 4345
BsmAI GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
BsmBI CGTCTC 2 cut(s) 3036, 5187
BsmFI GGGAC 8 cut(s) 419, 708, 942, 2100, 2180, 2300, 2954, 4345
BsmI GAATGC 4 cut(s) 716, 2386, 3993, 4943
BsnI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
Bso31I GGTCTC 2 cut(s) 2785, 3493
BsoBI CYCGRG 3 cut(s) 2231, 4362, 4520
Bsp119I TTCGAA 3 cut(s) 344, 1832, 4976
Bsp1286I GDGCHC 4 cut(s) 269, 1264, 3566, 4164
BspACI CCGC 9 cut(s) 1753, 2125, 3267, 3774, 4409, 4450, 4661, 4994, 5169
BspANI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
BspDI ATCGAT 2 cut(s) 1651, 3476
BspFNI CGCG 2 cut(s) 224, 2706
BspHI TCATGA 3 cut(s) 234, 1066, 3751
BspLI GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
BspMAI CTGCAG 2 cut(s) 2546, 4545
BspMI ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
BspQI GCTCTTC 1 cut(s) 2193
BspT104I TTCGAA 3 cut(s) 344, 1832, 4976
BspTI CTTAAG 1 cut(s) 1441
BspTNI GGTCTC 2 cut(s) 2785, 3493
BsrDI GCAATG 5 cut(s) 2210, 2243, 2821, 3217, 4302
BssECI CCNNGG 8 cut(s) 369, 442, 925, 2039, 2612, 2842, 4362, 4480
BssNAI GTATAC 1 cut(s) 1889
BssSI CACGAG 1 cut(s) 2447
BssT1I CCWWGG 4 cut(s) 369, 442, 2612, 4480
Bst1107I GTATAC 1 cut(s) 1889
Bst2BI CACGAG 1 cut(s) 2447
Bst2UI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
Bst6I CTCTTC 7 cut(s) 125, 2193, 2490, 2910, 3169, 3321, 4566
BstAFI CTTAAG 1 cut(s) 1441
BstAPI GCANNNNNTGC 4 cut(s) 423, 2816, 3728, 3788
BstBAI YACGTR 3 cut(s) 3461, 3797, 4196
BstBI TTCGAA 3 cut(s) 344, 1832, 4976
BstEII GGTNACC 1 cut(s) 1347
BstFNI CGCG 2 cut(s) 224, 2706
BstH2I RGCGCY 1 cut(s) 4550
BstHHI GCGC 3 cut(s) 1174, 3993, 4549
BstMAI GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
BstMCI CGRYCG 2 cut(s) 1655, 3476
BstNI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
BstNSI RCATGY 4 cut(s) 1195, 1908, 2814, 3055
BstPI GGTNACC 1 cut(s) 1347
BstSCI CCNGG 9 cut(s) 924, 1997, 2039, 2563, 2842, 3276, 4361, 4362, 4775
BstSFI CTRYAG 4 cut(s) 1340, 2542, 2853, 4541
BstUI CGCG 2 cut(s) 224, 2706
BstV1I GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
BstV2I GAAGAC 3 cut(s) 2559, 2652, 2763
BstX2I RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
BstYI RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
BstZ17I GTATAC 1 cut(s) 1889
Bsu15I ATCGAT 2 cut(s) 1651, 3476
Bsu36I CCTNAGG 1 cut(s) 4413
BsuI GTATCC 2 cut(s) 2058, 4570
BsuRI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
BsuTUI ATCGAT 2 cut(s) 1651, 3476
BtgZI GCGATG 2 cut(s) 2176, 5071
BtrI CACGTC 1 cut(s) 2458
BtsI GCAGTG 2 cut(s) 2551, 5051
BtsIMutI CAGTG 6 cut(s) 859, 2218, 2551, 2563, 4826, 5051
BveI ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
CaiI CAGNNNCTG 1 cut(s) 3227
CciI TCATGA 3 cut(s) 234, 1066, 3751
CfoI GCGC 3 cut(s) 1174, 3993, 4549
Cfr13I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
Cfr9I CCCGGG 1 cut(s) 4362
ClaI ATCGAT 2 cut(s) 1651, 3476
CsiI ACCWGGT 1 cut(s) 1997
Csp6I GTAC 6 cut(s) 206, 907, 1995, 2435, 3674, 4137
CviQI GTAC 6 cut(s) 206, 907, 1995, 2435, 3674, 4137
DraI TTTAAA 2 cut(s) 1498, 2388
EaeI YGGCCR 2 cut(s) 2584, 2746
Eam1104I CTCTTC 7 cut(s) 125, 2193, 2490, 2910, 3169, 3321, 4566
EarI CTCTTC 7 cut(s) 125, 2193, 2490, 2910, 3169, 3321, 4566
EciI GGCGGA 1 cut(s) 5158
Ecl136II GAGCTC 2 cut(s) 267, 1262
Eco130I CCWWGG 4 cut(s) 369, 442, 2612, 4480
Eco24I GRGCYC 2 cut(s) 269, 1264
Eco31I GGTCTC 2 cut(s) 2785, 3493
Eco32I GATATC 1 cut(s) 4674
Eco47I GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
Eco53kI GAGCTC 2 cut(s) 267, 1262
Eco57I CTGAAG 4 cut(s) 106, 1940, 2891, 4268
Eco72I CACGTG 1 cut(s) 3461
Eco81I CCTNAGG 1 cut(s) 4413
Eco88I CYCGRG 3 cut(s) 2231, 4362, 4520
Eco91I GGTNACC 1 cut(s) 1347
EcoICRI GAGCTC 2 cut(s) 267, 1262
EcoO109I RGGNCCY 3 cut(s) 2111, 3522, 4734
EcoO65I GGTNACC 1 cut(s) 1347
EcoRI GAATTC 4 cut(s) 2915, 3250, 3914, 4679
EcoRII CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
EcoRV GATATC 1 cut(s) 4674
EcoT14I CCWWGG 4 cut(s) 369, 442, 2612, 4480
EcoT22I ATGCAT 1 cut(s) 5063
EcoT38I GRGCYC 2 cut(s) 269, 1264
ErhI CCWWGG 4 cut(s) 369, 442, 2612, 4480
Esp3I CGTCTC 2 cut(s) 3036, 5187
FaqI GGGAC 8 cut(s) 419, 708, 942, 2100, 2180, 2300, 2954, 4345
FauI CCCGC 5 cut(s) 1760, 2132, 3781, 4416, 5001
FauNDI CATATG 2 cut(s) 1127, 2319
FbaI TGATCA 2 cut(s) 567, 1201
FblI GTMKAC 3 cut(s) 484, 1888, 5047
Fnu4HI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
FriOI GRGCYC 2 cut(s) 269, 1264
Fsp4HI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
FspBI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
FspI TGCGCA 1 cut(s) 1173
GlaI GCGC 3 cut(s) 1173, 3992, 4548
GluI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
GsaI CCCAGC 2 cut(s) 615, 2800
GsuI CTGGAG 1 cut(s) 3105
HaeII RGCGCY 1 cut(s) 4550
HaeIII GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
HapII CCGG 4 cut(s) 98, 1508, 4363, 4777
HhaI GCGC 3 cut(s) 1174, 3993, 4549
Hin6I GCGC 3 cut(s) 1172, 3991, 4547
HinP1I GCGC 3 cut(s) 1172, 3991, 4547
HincII GTYRAC 2 cut(s) 3181, 4782
HindII GTYRAC 2 cut(s) 3181, 4782
HindIII AAGCTT 2 cut(s) 642, 5247
HpaI GTTAAC 1 cut(s) 4782
HpaII CCGG 4 cut(s) 98, 1508, 4363, 4777
HphI GGTGA 5 cut(s) 1341, 1715, 2543, 4156, 4364
Hpy99I CGWCG 4 cut(s) 201, 1634, 2595, 4915
HspAI GCGC 3 cut(s) 1172, 3991, 4547
Ksp22I TGATCA 2 cut(s) 567, 1201
KspAI GTTAAC 1 cut(s) 4782
LguI GCTCTTC 1 cut(s) 2193
LmnI GCTCC 4 cut(s) 1267, 3094, 3928, 4174
Lsp1109I GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
MabI ACCWGGT 1 cut(s) 1997
MaeI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
MaeIII GTNAC 8 cut(s) 961, 1347, 1975, 2297, 3115, 4242, 4316, 5083
MfeI CAATTG 2 cut(s) 654, 5144
MflI RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
MhlI GDGCHC 4 cut(s) 269, 1264, 3566, 4164
MlsI TGGCCA 2 cut(s) 2586, 2748
MluI ACGCGT 1 cut(s) 222
MluNI TGGCCA 2 cut(s) 2586, 2748
MlyI GAGTC 5 cut(s) 68, 2666, 2909, 3297, 3836
MmeI TCCRAC 3 cut(s) 674, 4366, 4893
Mox20I TGGCCA 2 cut(s) 2586, 2748
Mph1103I ATGCAT 1 cut(s) 5063
MroXI GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
MscI TGGCCA 2 cut(s) 2586, 2748
Msp20I TGGCCA 2 cut(s) 2586, 2748
MspA1I CMGCKG 2 cut(s) 2335, 3779
MspCI CTTAAG 1 cut(s) 1441
MspI CCGG 4 cut(s) 98, 1508, 4363, 4777
MspR9I CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
MunI CAATTG 2 cut(s) 654, 5144
Mva1269I GAATGC 4 cut(s) 716, 2386, 3993, 4943
MvaI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
MvnI CGCG 2 cut(s) 224, 2706
NciI CCSGG 3 cut(s) 4363, 4364, 4777
NdeI CATATG 2 cut(s) 1127, 2319
NlaIV GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
NmuCI GTSAC 5 cut(s) 1347, 1975, 2297, 3115, 4316
NsbI TGCGCA 1 cut(s) 1173
NsiI ATGCAT 1 cut(s) 5063
NspI RCATGY 4 cut(s) 1195, 1908, 2814, 3055
NspV TTCGAA 3 cut(s) 344, 1832, 4976
OliI CACNNNNGTG 1 cut(s) 5132
PaeI GCATGC 3 cut(s) 1195, 2814, 3055
PaeR7I CTCGAG 2 cut(s) 2231, 4520
PagI TCATGA 3 cut(s) 234, 1066, 3751
PaqCI CACCTGC 3 cut(s) 1185, 4132, 5145
PciI ACATGT 1 cut(s) 1904
PciSI GCTCTTC 1 cut(s) 2193
PcsI WCGNNNNNNNCGW 2 cut(s) 205, 2454
PctI GAATGC 4 cut(s) 716, 2386, 3993, 4943
PdmI GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
PkrI GCNGC 9 cut(s) 116, 295, 716, 1062, 2337, 2809, 3304, 3778, 3781
Ple19I CGATCG 2 cut(s) 1655, 3476
PleI GAGTC 5 cut(s) 67, 2665, 2908, 3296, 3836
PmaCI CACGTG 1 cut(s) 3461
PmlI CACGTG 1 cut(s) 3461
PpsI GAGTC 5 cut(s) 67, 2665, 2908, 3296, 3836
Ppu21I YACGTR 3 cut(s) 3461, 3797, 4196
PpuMI RGGWCCY 2 cut(s) 2111, 4734
PscI ACATGT 1 cut(s) 1904
PshBI ATTAAT 2 cut(s) 4095, 5025
PsiI TTATAA 1 cut(s) 4280
Psp124BI GAGCTC 2 cut(s) 269, 1264
Psp5II RGGWCCY 2 cut(s) 2111, 4734
Psp6I CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
PspCI CACGTG 1 cut(s) 3461
PspEI GGTNACC 1 cut(s) 1347
PspFI CCCAGC 2 cut(s) 611, 2796
PspGI CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
PspN4I GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
PspPI GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
PspPPI RGGWCCY 2 cut(s) 2111, 4734
PspXI VCTCGAGB 1 cut(s) 2231
PsrI GAACNNNNNNTAC 2 cut(s) 2403, 2435
PstI CTGCAG 2 cut(s) 2546, 4545
PstNI CAGNNNCTG 1 cut(s) 3227
PsuI RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
PvuI CGATCG 2 cut(s) 1655, 3476
PvuII CAGCTG 2 cut(s) 2335, 3779
RsaI GTAC 6 cut(s) 207, 908, 1996, 2436, 3675, 4138
RsaNI GTAC 6 cut(s) 206, 907, 1995, 2435, 3674, 4137
SacI GAGCTC 2 cut(s) 269, 1264
SapI GCTCTTC 1 cut(s) 2193
SatI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
Sau96I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
SbfI CCTGCAGG 1 cut(s) 4545
SchI GAGTC 5 cut(s) 68, 2666, 2909, 3297, 3836
ScrFI CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
SdaI CCTGCAGG 1 cut(s) 4545
SduI GDGCHC 4 cut(s) 269, 1264, 3566, 4164
SexAI ACCWGGT 1 cut(s) 1997
SfcI CTRYAG 4 cut(s) 1340, 2542, 2853, 4541
Sfr274I CTCGAG 2 cut(s) 2231, 4520
SfuI TTCGAA 3 cut(s) 344, 1832, 4976
SinI GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
SlaI CTCGAG 2 cut(s) 2231, 4520
SmaI CCCGGG 1 cut(s) 4364
SmlI CTYRAG 5 cut(s) 1441, 2231, 4163, 4520, 5068
SmoI CTYRAG 5 cut(s) 1441, 2231, 4163, 4520, 5068
SphI GCATGC 3 cut(s) 1195, 2814, 3055
Sse8387I CCTGCAGG 1 cut(s) 4545
SsiI CCGC 9 cut(s) 1753, 2125, 3267, 3774, 4409, 4450, 4661, 4994, 5169
SspI AATATT 1 cut(s) 2512
SspMI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
SstI GAGCTC 2 cut(s) 269, 1264
StyD4I CCNGG 9 cut(s) 924, 1997, 2039, 2563, 2842, 3276, 4361, 4362, 4775
StyI CCWWGG 4 cut(s) 369, 442, 2612, 4480
TaqII GACCGA 2 cut(s) 1643, 1723
TatI WGTACW 1 cut(s) 2434
TscAI CASTG 6 cut(s) 859, 2225, 2551, 2563, 4826, 5058
TseFI GTSAC 5 cut(s) 1347, 1975, 2297, 3115, 4316
TseI GCWGC 9 cut(s) 114, 293, 714, 1060, 2335, 2807, 3302, 3776, 3779
Tsp45I GTSAC 5 cut(s) 1347, 1975, 2297, 3115, 4316
TspGWI ACGGA 3 cut(s) 3691, 3847, 5137
TspMI CCCGGG 1 cut(s) 4362
TspRI CASTG 6 cut(s) 859, 2225, 2551, 2563, 4826, 5058
Vha464I CTTAAG 1 cut(s) 1441
VpaK11BI GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
VspI ATTAAT 2 cut(s) 4095, 5025
XbaI TCTAGA 2 cut(s) 2774, 3617
XceI RCATGY 4 cut(s) 1195, 1908, 2814, 3055
XhoI CTCGAG 2 cut(s) 2231, 4520
XmaI CCCGGG 1 cut(s) 4362
XmiI GTMKAC 3 cut(s) 484, 1888, 5047
XmnI GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
XspI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
Zsp2I ATGCAT 1 cut(s) 5063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.