Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0018885

Physical Location & Seq

Genomic Coordinates Forward (+)

9401912 .. 9402650

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGGCAGCGGTTCACGAAGCTCCTGACATTGGTGTGTTACATAAACAGATCAGATCTGATGCTTGTGGATGGTTTACCTGTAGTACAGATGATGAGGAGAAGAGCAAGGTTGATAACTTGCCTGCATTTTGTGAATTCACGTTTGAGCAACTTAAAAATGCGACATCTGGTTTTGCAGTCGAGTACGCTGTGTCTGAGCAAGTAGAGAGAGCTCCTAACGTTGGTTATAAAGGGAAACTCGAAAATCAGAAGAGAATTGCTCTTAAGCACTTCAATAGGTTGACCTGGCCCGAATGCTTGGCAATTTTTGCAGGAGGAAGCAAGATTGGTTGGTCAGCTCCGCAACCACAGATTGGTCAACTTGCTCGGTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.0

Weight (kDa)

6.82

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018885)

Species	Orthologous Gene IDs
malus_domestica	MD14G1241500.v1.1
pyrus_communis	pycom01g00400 pycom01g08500 pycom05g14550 pycom07g13640 pycom07g13700 pycom12659g00060 pycom12659g00150 pycom13g00430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	2 cut(s)	11, 344
AclI	AACGTT	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	2 cut(s)	88, 188
AfiI	CCNNNNNNNGG	3 cut(s)	32, 224, 356
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	23, 215, 341
AluI	AGCT	3 cut(s)	23, 215, 341
Alw21I	GWGCWC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	82
BfrI	CTTAAG	1 cut(s)	266
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 224, 356
BseBI	CCWGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	3 cut(s)	32, 224, 356
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	32, 224, 356
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	51, 56
BspACI	CCGC	2 cut(s)	11, 344
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	266
BssMI	GATC	2 cut(s)	51, 56
Bst2UI	CCWGG	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	98, 248
BstAFI	CTTAAG	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	54, 59
BstMBI	GATC	2 cut(s)	51, 56
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	87, 187
CviJI	RGCY	4 cut(s)	23, 215, 292, 341
CviKI_1	RGCY	4 cut(s)	23, 215, 292, 341
CviQI	GTAC	2 cut(s)	87, 187
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	53, 58
DpnII	GATC	2 cut(s)	51, 56
Eam1104I	CTCTTC	2 cut(s)	98, 248
EarI	CTCTTC	2 cut(s)	98, 248
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	217
FaiI	YATR	2 cut(s)	45, 231
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	292
HincII	GTYRAC	2 cut(s)	285, 362
HindII	GTYRAC	2 cut(s)	285, 362
Hpy166II	GTNNAC	4 cut(s)	16, 78, 285, 362
Hpy188I	TCNGA	4 cut(s)	56, 61, 199, 252
Hpy188III	TCNNGA	2 cut(s)	17, 26
Hpy8I	GTNNAC	4 cut(s)	16, 78, 285, 362
HpyCH4IV	ACGT	2 cut(s)	143, 222
HpyCH4V	TGCA	3 cut(s)	128, 179, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	143, 222
Kzo9I	GATC	2 cut(s)	51, 56
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	28, 220, 346
LpnPI	CCDG	7 cut(s)	39, 94, 138, 156, 274, 300, 301
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	143, 222
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	2 cut(s)	53, 58
MboI	GATC	2 cut(s)	51, 56
MboII	GAAGA	2 cut(s)	115, 265
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	137, 258, 306
MnlI	CCTC	2 cut(s)	91, 311
MseI	TTAA	2 cut(s)	156, 267
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	11
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	51, 56
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	217
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	2 cut(s)	88, 188
RsaNI	GTAC	2 cut(s)	87, 187
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	156, 267
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	51, 56
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	9 cut(s)	25, 83, 114, 146, 217, 225, 284, 290, 343
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	137, 258, 306
SsiI	CCGC	2 cut(s)	11, 344
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	287
TaiI	ACGT	2 cut(s)	146, 225
TaqI	TCGA	2 cut(s)	183, 243
TasI	AATT	3 cut(s)	137, 258, 306
TatI	WGTACW	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	156, 267
Tru9I	TTAA	2 cut(s)	156, 267
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.