transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD14G1241500.v1.1 |
| pyrus_communis | pycom01g00400 pycom01g08500 pycom05g14550 pycom07g13640 pycom07g13700 pycom12659g00060 pycom12659g00150 pycom13g00430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 123, 428 |
| AcsI | RAATTY | 3 cut(s) | 244, 537, 893 |
| AfaI | GTAC | 1 cut(s) | 142 |
| AgsI | TTSAA | 6 cut(s) | 202, 542, 568, 589, 611, 899 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 677, 709 |
| AluBI | AGCT | 3 cut(s) | 20, 667, 750 |
| AluI | AGCT | 3 cut(s) | 20, 667, 750 |
| AlwI | GGATC | 2 cut(s) | 123, 428 |
| ApoI | RAATTY | 3 cut(s) | 244, 537, 893 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 77, 109 |
| AsuC2I | CCSGG | 1 cut(s) | 421 |
| AsuHPI | GGTGA | 3 cut(s) | 15, 311, 815 |
| BbsI | GAAGAC | 1 cut(s) | 653 |
| BccI | CCATC | 3 cut(s) | 230, 247, 620 |
| BceAI | ACGGC | 1 cut(s) | 159 |
| BclI | TGATCA | 1 cut(s) | 384 |
| BcnI | CCSGG | 1 cut(s) | 421 |
| BfaI | CTAG | 2 cut(s) | 5, 335 |
| Bme1390I | CCNGG | 1 cut(s) | 421 |
| BmrFI | CCNGG | 1 cut(s) | 421 |
| BmrI | ACTGGG | 2 cut(s) | 345, 564 |
| BmuI | ACTGGG | 2 cut(s) | 345, 564 |
| BpiI | GAAGAC | 1 cut(s) | 653 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| BpuMI | CCSGG | 1 cut(s) | 421 |
| Bsa29I | ATCGAT | 1 cut(s) | 127 |
| BsaBI | GATNNNNATC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 1 cut(s) | 419 |
| Bse1I | ACTGG | 4 cut(s) | 216, 351, 559, 647 |
| Bse8I | GATNNNNATC | 1 cut(s) | 221 |
| BseCI | ATCGAT | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 419 |
| BseGI | GGATG | 2 cut(s) | 225, 631 |
| BseJI | GATNNNNATC | 1 cut(s) | 221 |
| BseNI | ACTGG | 4 cut(s) | 216, 351, 559, 647 |
| BsgI | GTGCAG | 1 cut(s) | 549 |
| BshVI | ATCGAT | 1 cut(s) | 127 |
| BsiSI | CCGG | 1 cut(s) | 421 |
| Bsp143I | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| BspDI | ATCGAT | 1 cut(s) | 127 |
| BspHI | TCATGA | 1 cut(s) | 190 |
| BspPI | GGATC | 2 cut(s) | 123, 428 |
| BspQI | GCTCTTC | 1 cut(s) | 606 |
| BsrI | ACTGG | 4 cut(s) | 216, 351, 559, 647 |
| BssECI | CCNNGG | 1 cut(s) | 419 |
| BssMI | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| Bst4CI | ACNGT | 1 cut(s) | 853 |
| Bst6I | CTCTTC | 1 cut(s) | 606 |
| BstC8I | GCNNGC | 1 cut(s) | 660 |
| BstDEI | CTNAG | 1 cut(s) | 981 |
| BstF5I | GGATG | 2 cut(s) | 225, 631 |
| BstKTI | GATC | 5 cut(s) | 127, 131, 379, 387, 436 |
| BstMBI | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 664 |
| BstNSI | RCATGY | 1 cut(s) | 620 |
| BstSCI | CCNGG | 1 cut(s) | 419 |
| BstV2I | GAAGAC | 1 cut(s) | 653 |
| Bsu15I | ATCGAT | 1 cut(s) | 127 |
| BsuTUI | ATCGAT | 1 cut(s) | 127 |
| BtsCI | GGATG | 2 cut(s) | 225, 631 |
| BtsIMutI | CAGTG | 1 cut(s) | 849 |
| Cac8I | GCNNGC | 1 cut(s) | 660 |
| CciI | TCATGA | 1 cut(s) | 190 |
| ClaI | ATCGAT | 1 cut(s) | 127 |
| Csp6I | GTAC | 1 cut(s) | 141 |
| CviAII | CATG | 4 cut(s) | 191, 594, 617, 730 |
| CviJI | RGCY | 6 cut(s) | 20, 146, 495, 592, 667, 750 |
| CviKI_1 | RGCY | 6 cut(s) | 20, 146, 495, 592, 667, 750 |
| CviQI | GTAC | 1 cut(s) | 141 |
| DdeI | CTNAG | 1 cut(s) | 981 |
| DpnI | GATC | 5 cut(s) | 126, 130, 378, 386, 435 |
| DpnII | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| DraI | TTTAAA | 2 cut(s) | 549, 924 |
| Eam1104I | CTCTTC | 1 cut(s) | 606 |
| EarI | CTCTTC | 1 cut(s) | 606 |
| FaeI | CATG | 4 cut(s) | 194, 597, 620, 733 |
| FatI | CATG | 4 cut(s) | 190, 593, 616, 729 |
| FbaI | TGATCA | 1 cut(s) | 384 |
| FokI | GGATG | 2 cut(s) | 212, 638 |
| FspBI | CTAG | 2 cut(s) | 5, 335 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HapII | CCGG | 1 cut(s) | 421 |
| Hin1II | CATG | 4 cut(s) | 194, 597, 620, 733 |
| HincII | GTYRAC | 1 cut(s) | 96 |
| HindII | GTYRAC | 1 cut(s) | 96 |
| HindIII | AAGCTT | 1 cut(s) | 18 |
| HinfI | GANTC | 7 cut(s) | 62, 116, 194, 217, 338, 776, 950 |
| HpaII | CCGG | 1 cut(s) | 421 |
| HphI | GGTGA | 3 cut(s) | 15, 311, 815 |
| Hpy166II | GTNNAC | 3 cut(s) | 96, 319, 574 |
| Hpy188I | TCNGA | 3 cut(s) | 151, 640, 890 |
| Hpy188III | TCNNGA | 2 cut(s) | 191, 335 |
| Hpy8I | GTNNAC | 3 cut(s) | 96, 319, 574 |
| HpyCH4III | ACNGT | 1 cut(s) | 853 |
| HpyCH4IV | ACGT | 2 cut(s) | 635, 650 |
| HpyCH4V | TGCA | 2 cut(s) | 530, 632 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 664 |
| HpyF3I | CTNAG | 1 cut(s) | 981 |
| HpySE526I | ACGT | 2 cut(s) | 635, 650 |
| Hsp92II | CATG | 4 cut(s) | 194, 597, 620, 733 |
| Ksp22I | TGATCA | 1 cut(s) | 384 |
| Kzo9I | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| LguI | GCTCTTC | 1 cut(s) | 606 |
| LmnI | GCTCC | 1 cut(s) | 672 |
| LpnPI | CCDG | 5 cut(s) | 197, 364, 434, 540, 628 |
| MaeI | CTAG | 2 cut(s) | 5, 335 |
| MaeII | ACGT | 2 cut(s) | 635, 650 |
| MaeIII | GTNAC | 2 cut(s) | 79, 505 |
| MalI | GATC | 5 cut(s) | 126, 130, 378, 386, 435 |
| MboI | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| MboII | GAAGA | 2 cut(s) | 623, 658 |
| MfeI | CAATTG | 2 cut(s) | 324, 457 |
| MluCI | AATT | 9 cut(s) | 234, 244, 268, 324, 457, 474, 537, 687, 893 |
| MlyI | GAGTC | 3 cut(s) | 347, 785, 959 |
| MmeI | TCCRAC | 2 cut(s) | 663, 694 |
| MnlI | CCTC | 4 cut(s) | 100, 178, 420, 789 |
| MspI | CCGG | 1 cut(s) | 421 |
| MspR9I | CCNGG | 1 cut(s) | 421 |
| MunI | CAATTG | 2 cut(s) | 324, 457 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 664 |
| NciI | CCSGG | 1 cut(s) | 421 |
| NdeII | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| NlaIII | CATG | 4 cut(s) | 194, 597, 620, 733 |
| NspI | RCATGY | 1 cut(s) | 620 |
| PagI | TCATGA | 1 cut(s) | 190 |
| PciSI | GCTCTTC | 1 cut(s) | 606 |
| PfeI | GAWTC | 4 cut(s) | 62, 116, 194, 217 |
| PleI | GAGTC | 3 cut(s) | 346, 784, 958 |
| PpsI | GAGTC | 3 cut(s) | 346, 784, 958 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 422, 454 |
| RsaI | GTAC | 1 cut(s) | 142 |
| RsaNI | GTAC | 1 cut(s) | 141 |
| SapI | GCTCTTC | 1 cut(s) | 606 |
| Sau3AI | GATC | 5 cut(s) | 124, 128, 376, 384, 433 |
| SchI | GAGTC | 3 cut(s) | 347, 785, 959 |
| ScrFI | CCNGG | 1 cut(s) | 421 |
| SetI | ASST | 8 cut(s) | 22, 28, 189, 638, 653, 669, 752, 828 |
| Sse9I | AATT | 9 cut(s) | 234, 244, 268, 324, 457, 474, 537, 687, 893 |
| SspMI | CTAG | 2 cut(s) | 5, 335 |
| StyD4I | CCNGG | 1 cut(s) | 419 |
| TaaI | ACNGT | 1 cut(s) | 853 |
| TaiI | ACGT | 2 cut(s) | 638, 653 |
| TaqI | TCGA | 2 cut(s) | 127, 908 |
| TasI | AATT | 9 cut(s) | 234, 244, 268, 324, 457, 474, 537, 687, 893 |
| TfiI | GAWTC | 4 cut(s) | 62, 116, 194, 217 |
| TscAI | CASTG | 1 cut(s) | 856 |
| TspDTI | ATGAA | 5 cut(s) | 37, 54, 64, 179, 186 |
| TspGWI | ACGGA | 1 cut(s) | 591 |
| TspRI | CASTG | 1 cut(s) | 856 |
| XapI | RAATTY | 3 cut(s) | 244, 537, 893 |
| XbaI | TCTAGA | 1 cut(s) | 334 |
| XceI | RCATGY | 1 cut(s) | 620 |
| XspI | CTAG | 2 cut(s) | 5, 335 |