Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0018885

Physical Location & Seq

Genomic Coordinates Reverse (-)

15520681 .. 15522916

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATTTTTGCAGCTGGAATCTTTTGGAAATGGAGAGCAATCTGTCTCAGTTTTGGAATGTGCTAGAATCAAAGAAGTTAACTCAAGCTGCTATTTCAAAGCTGGAGGAGGCATTGTTGATTAATCCTAGGAAATATGATGCTCTGTGGTGCTGGGAAATGCTTAAATTGCTTGCGCATTATGCACTCTGGACCAGAATGAAGCAAAGGTTCCAAAAGGTGTTGTACTGCTTCCAGAAGGCTTTCAACGAGGTTTCGTTTATACAGAGACAAGGACAACTTGGCCACTGCACCATTTGTCGGCACTTGAGGGTACACTTCTGGGCATCATTACGGGTGTCAATTTCTTTACAACTCATGGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

123

Amino Acids

14.7

Weight (kDa)

9.4

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018885)

Species	Orthologous Gene IDs
malus_domestica	MD14G1241500.v1.1
pyrus_communis	pycom01g00400 pycom01g08500 pycom05g14550 pycom07g13640 pycom07g13700 pycom12659g00060 pycom12659g00150 pycom13g00430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	283
AfaI	GTAC	2 cut(s)	227, 315
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	99, 247
AluBI	AGCT	3 cut(s)	15, 89, 103
AluI	AGCT	3 cut(s)	15, 89, 103
Alw26I	GTCTC	2 cut(s)	51, 262
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	12, 89
AseI	ATTAAT	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	192
AvrII	CCTAGG	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	24, 76
BcoDI	GTCTC	2 cut(s)	51, 262
BfaI	CTAG	2 cut(s)	65, 129
BisI	GCNGC	2 cut(s)	13, 90
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	14, 91
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	2 cut(s)	130, 335
BpmI	CTGGAG	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	69, 328
BsaJI	CCNNGG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	24, 76
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	51, 262
BsnI	GGCC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	51, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 182
BstV1I	GCAGC	2 cut(s)	24, 76
BsuRI	GGCC	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	226, 314
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	5 cut(s)	15, 89, 103, 242, 285
CviKI_1	RGCY	5 cut(s)	15, 89, 103, 242, 285
CviQI	GTAC	2 cut(s)	226, 314
DdeI	CTNAG	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	361
FaiI	YATR	4 cut(s)	138, 183, 263, 359
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	13, 90
Fsp4HI	GCNGC	2 cut(s)	13, 90
FspBI	CTAG	2 cut(s)	65, 129
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	13, 90
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	19, 68
HpaI	GTTAAC	1 cut(s)	81
Hpy166II	GTNNAC	2 cut(s)	81, 316
Hpy188III	TCNNGA	2 cut(s)	190, 235
Hpy8I	GTNNAC	2 cut(s)	81, 316
HpyAV	CCTTC	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	4, 12, 185, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 182
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	176
KspAI	GTTAAC	1 cut(s)	81
LpnPI	CCDG	6 cut(s)	89, 139, 175, 208, 248, 307
Lsp1109I	GCAGC	2 cut(s)	24, 76
LweI	GCATC	2 cut(s)	130, 335
MaeI	CTAG	2 cut(s)	65, 129
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	2 cut(s)	167, 342
MluNI	TGGCCA	1 cut(s)	285
MnlI	CCTC	4 cut(s)	100, 103, 244, 303
Mox20I	TGGCCA	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	3 cut(s)	80, 123, 165
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	169, 182
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	212
NsbI	TGCGCA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	19, 68
PkrI	GCNGC	2 cut(s)	14, 91
PshBI	ATTAAT	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	2 cut(s)	227, 315
RsaNI	GTAC	2 cut(s)	226, 314
SaqAI	TTAA	3 cut(s)	80, 123, 165
SatI	GCNGC	2 cut(s)	13, 90
Sau96I	GGNCC	1 cut(s)	192
SetI	ASST	6 cut(s)	17, 91, 105, 212, 222, 255
SfaNI	GCATC	2 cut(s)	130, 335
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	84, 307
SmoI	CTYRAG	2 cut(s)	84, 307
Sse9I	AATT	2 cut(s)	167, 342
SspMI	CTAG	2 cut(s)	65, 129
StyI	CCWWGG	1 cut(s)	128
TasI	AATT	2 cut(s)	167, 342
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	19, 68
Tru1I	TTAA	3 cut(s)	80, 123, 165
Tru9I	TTAA	3 cut(s)	80, 123, 165
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	2 cut(s)	12, 89
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	123
XmaJI	CCTAGG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	2 cut(s)	65, 129
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.