pycom12659g00060

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012659
OG0018885
Physical Location & Seq
Forward (+)
206962 .. 208581
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12659g00060.6

Sequence Viewer

Length: 1077 bp
ATGATGCTAGGGTATAAGGAAACTTCACCTAATCGTTGGGAACTTATATTCATGAGTATATCATGCGCTTTCATAGTTACGAATTATGTGCCTTCATATAGAAAACTTTTAAGGAATAATTTGATTGCAATGCTAACTTGGGGTGTTTTGGTTCATAATTCATTGAATAAGCAACTGAAGATTGTGTTGTATGCAAGTATGCCATGTGTGGAGAAAAACCTCCTATTTACATTATTGTTTTGTTTGTTTGATTTTCGTCCAAAAACCAAATCCCCAATTGTCTTAGAGTGTCTAATTGGTTCAAATATCCAATTTTCGTCCAAGTTTGTGTTAAGGCTCAAAACTGCCCAGTTTGTGTTTTTAGGCAGTTTTGAGTGCTTTTATGAGTTAAGTTGTTTAGCAATCCCTCCTAATCCCCGGTGTAAGAACGATCCCTACTTATTTATATGCTACAATTGTCAAAAGAGGGTTAATTTGTGTGTTAAGTTAATTTTCGCATCAGAAGACCGTTGGGCCAACAAGAAAAGATTGGAGCTTGCGTTTGGAGGATGGATGTCACCCTTTCGGCTAGTCTATGGCAAACCATGCCATCTCCCCGTGGAGTTAGAACACAAGGCACATTGGGCGATCAAGACATTCAACATGGACATAGATGCGATTTTGCTTGAAGCTTATGAGAATGCTTGCATTTACAAGGAAAAGACCAAGGCTTTCCATGACAAGATGATTCATAGCAAAACATTCTCTATAGGGCAAAAAGTTTTACTTTTTAATTCTCGCCTTTGTTTATTTCCTGGTAAGTTACATTCTAAGTTGATTGGCCCCGTTCTTGAGGAATGGCCAAGAATTCAAAGTGAATGGGCATCGTTTGAAGCCATATTACGAAAGTGGGTTCCAATTGATGCCAAGAAGAGGGTTTCCGGCTGCAAGACGTTAAAAGGATTTGGGCAATTCCACAATTCACTCCAAACAATCAGATTTGAGTTCCTAACTCTCTCTCTCTTTATTGTTTTTATTTCGGCTTTTTCGTTAGTTTTTGTTGCTTGTTTGAATGTGAGTCTTTGTTTGAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

359

Amino Acids

41.48

Weight (kDa)

9.41

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 839
AcsI RAATTY 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 912
AgsI TTSAA 8 cut(s) 166, 303, 640, 668, 851, 872, 1051, 1069
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 2 cut(s) 535, 671
AluI AGCT 2 cut(s) 535, 671
AlwI GGATC 1 cut(s) 425
AoxI GGCC 3 cut(s) 513, 820, 839
ApeKI GCWGC 1 cut(s) 924
ApoI RAATTY 1 cut(s) 846
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 513, 821
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 18, 549
BalI TGGCCA 1 cut(s) 841
BarI GAAGNNNNNNTAC 2 cut(s) 864, 896
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 911
BccI CCATC 2 cut(s) 543, 597
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 795
BcnI CCSGG 1 cut(s) 418
BfaI CTAG 2 cut(s) 8, 569
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 1 cut(s) 925
BlsI GCNGC 1 cut(s) 926
Bme1390I CCNGG 2 cut(s) 418, 795
BmgT120I GGNCC 2 cut(s) 513, 821
BmiI GGNNCC 2 cut(s) 823, 894
BmrFI CCNGG 2 cut(s) 418, 795
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 4 cut(s) 506, 643, 872, 892
BmuI ACTGGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 851
BpuMI CCSGG 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 416, 597, 705
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 1 cut(s) 912
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 3 cut(s) 416, 597, 705
BseGI GGATG 2 cut(s) 554, 558
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 911
BshFI GGCC 3 cut(s) 515, 822, 841
BsiSI CCGG 2 cut(s) 418, 921
BslI CCNNNNNNNGG 1 cut(s) 912
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 3 cut(s) 515, 822, 841
Bsp143I GATC 2 cut(s) 430, 627
BspANI GGCC 3 cut(s) 515, 822, 841
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 823, 894
BspPI GGATC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 416, 597, 705
BssMI GATC 2 cut(s) 430, 627
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 537, 685
BstDEI CTNAG 2 cut(s) 283, 810
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 2 cut(s) 554, 558
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 433, 630
BstMBI GATC 2 cut(s) 430, 627
BstMWI GCNNNNNNNGC 2 cut(s) 585, 623
BstNI CCWGG 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 416, 793
BstSFI CTRYAG 1 cut(s) 747
BstV1I GCAGC 1 cut(s) 911
BstV2I GAAGAC 1 cut(s) 510
BsuRI GGCC 3 cut(s) 515, 822, 841
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 2 cut(s) 554, 558
Cac8I GCNNGC 2 cut(s) 537, 685
CciI TCATGA 1 cut(s) 51
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 513, 821
CviAII CATG 6 cut(s) 52, 63, 204, 585, 643, 716
DdeI CTNAG 2 cut(s) 283, 810
DpnI GATC 2 cut(s) 432, 629
DpnII GATC 2 cut(s) 430, 627
EaeI YGGCCR 1 cut(s) 839
Eam1104I CTCTTC 1 cut(s) 905
EarI CTCTTC 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 705
Eco57I CTGAAG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 846
EcoRII CCWGG 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 6 cut(s) 55, 66, 207, 588, 646, 719
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 6 cut(s) 51, 62, 203, 584, 642, 715
Fnu4HI GCNGC 1 cut(s) 925
FokI GGATG 2 cut(s) 561, 565
Fsp4HI GCNGC 1 cut(s) 925
FspBI CTAG 2 cut(s) 8, 569
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 925
HaeIII GGCC 3 cut(s) 515, 822, 841
HapII CCGG 2 cut(s) 418, 921
HhaI GCGC 1 cut(s) 68
Hin1II CATG 6 cut(s) 55, 66, 207, 588, 646, 719
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 2 cut(s) 727, 1057
HpaII CCGG 2 cut(s) 418, 921
HphI GGTGA 2 cut(s) 18, 549
Hpy188I TCNGA 2 cut(s) 502, 977
Hpy188III TCNNGA 3 cut(s) 52, 631, 830
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 4 cut(s) 128, 194, 687, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 623
HpyF3I CTNAG 2 cut(s) 283, 810
HpySE526I ACGT 1 cut(s) 932
Hsp92II CATG 6 cut(s) 55, 66, 207, 588, 646, 719
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 430, 627
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 5 cut(s) 362, 431, 780, 807, 934
Lsp1109I GCAGC 1 cut(s) 911
LweI GCATC 4 cut(s) 506, 643, 872, 892
MaeI CTAG 2 cut(s) 8, 569
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 3 cut(s) 76, 555, 801
MalI GATC 2 cut(s) 432, 629
MboI GATC 2 cut(s) 430, 627
MboII GAAGA 3 cut(s) 190, 515, 922
MfeI CAATTG 3 cut(s) 276, 454, 897
MlsI TGGCCA 1 cut(s) 841
MluNI TGGCCA 1 cut(s) 841
MlyI GAGTC 1 cut(s) 1066
MnlI CCTC 6 cut(s) 230, 417, 459, 539, 826, 906
Mox20I TGGCCA 1 cut(s) 841
MscI TGGCCA 1 cut(s) 841
MseI TTAA 8 cut(s) 110, 332, 389, 471, 483, 488, 771, 935
Msp20I TGGCCA 1 cut(s) 841
MspI CCGG 2 cut(s) 418, 921
MspR9I CCNGG 2 cut(s) 418, 795
MunI CAATTG 3 cut(s) 276, 454, 897
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 2 cut(s) 585, 623
NciI CCSGG 1 cut(s) 418
NdeII GATC 2 cut(s) 430, 627
NlaIII CATG 6 cut(s) 55, 66, 207, 588, 646, 719
NlaIV GGNNCC 2 cut(s) 823, 894
NmuCI GTSAC 1 cut(s) 555
PagI TCATGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 1025
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 1 cut(s) 727
PkrI GCNGC 1 cut(s) 926
PleI GAGTC 1 cut(s) 1065
PpsI GAGTC 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 2 cut(s) 823, 894
PspPI GGNCC 2 cut(s) 513, 821
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
SaqAI TTAA 8 cut(s) 110, 332, 389, 471, 483, 488, 771, 935
SatI GCNGC 1 cut(s) 925
Sau3AI GATC 2 cut(s) 430, 627
Sau96I GGNCC 2 cut(s) 513, 821
SchI GAGTC 1 cut(s) 1066
ScrFI CCNGG 2 cut(s) 418, 795
SetI ASST 5 cut(s) 31, 222, 537, 673, 935
SfaNI GCATC 4 cut(s) 506, 643, 872, 892
SfcI CTRYAG 1 cut(s) 747
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
SspMI CTAG 2 cut(s) 8, 569
StyD4I CCNGG 2 cut(s) 416, 793
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 1 cut(s) 935
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 8 cut(s) 110, 332, 389, 471, 483, 488, 771, 935
Tru9I TTAA 8 cut(s) 110, 332, 389, 471, 483, 488, 771, 935
TseFI GTSAC 1 cut(s) 555
TseI GCWGC 1 cut(s) 924
Tsp45I GTSAC 1 cut(s) 555
TspDTI ATGAA 6 cut(s) 40, 61, 84, 143, 150, 719
XapI RAATTY 1 cut(s) 846
XspI CTAG 2 cut(s) 8, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.