Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0018885

Physical Location & Seq

Genomic Coordinates Forward (+)

18088373 .. 18089479

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCATTTTTGCAGCTGGAATCTTTTGGAAATGGAGAGCAATCTGTCTCAGTTTTGGAATGTACTGGAATCAAAGAAGCTAACTCAAGATGCTATTTCAAAGCTGGAGGAGGCATTGTTGATTAATCCTAGGAAATATGATGCTCTGTGGTGCTGGGAAATGCTTAAATTGCTTGCGCATTATGCACTCCGGACCAGAATGAGGCAAAGGTTCCAAAAGGTGTTATACTGCTTCCAGAAGGCTTTCAACGAGGAGGAGGGTTTTTCCCGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

92

Amino Acids

11.15

Weight (kDa)

8.88

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018885)

Species	Orthologous Gene IDs
malus_domestica	MD14G1241500.v1.1
pyrus_communis	pycom01g00400 pycom01g08500 pycom05g14550 pycom07g13640 pycom07g13700 pycom12659g00060 pycom12659g00150 pycom13g00430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	1 cut(s)	271
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	99, 247
AluBI	AGCT	3 cut(s)	15, 79, 103
AluI	AGCT	3 cut(s)	15, 79, 103
Alw26I	GTCTC	1 cut(s)	51
Aor13HI	TCCGGA	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	12
AseI	ATTAAT	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	192
AvrII	CCTAGG	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	13
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	79, 130
BpmI	CTGGAG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	122, 266, 269
BseXI	GCAGC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	190, 268
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	189
BspACI	CCGC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 182
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	62
CviJI	RGCY	4 cut(s)	15, 79, 103, 242
CviKI_1	RGCY	4 cut(s)	15, 79, 103, 242
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	128
FaiI	YATR	3 cut(s)	138, 183, 226
Fnu4HI	GCNGC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	129
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	13
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	125
HapII	CCGG	2 cut(s)	190, 268
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	19, 68
HpaII	CCGG	2 cut(s)	190, 268
Hpy188III	TCNNGA	3 cut(s)	86, 190, 235
HpyAV	CCTTC	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	4, 12, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 182
HpyF3I	CTNAG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	50, 89, 139, 203, 208, 248
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	79, 130
MaeI	CTAG	1 cut(s)	129
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	6 cut(s)	100, 103, 195, 244, 247, 250
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	123, 165
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	2 cut(s)	190, 268
MspR9I	CCNGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	169, 182
NciI	CCSGG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	212
NsbI	TGCGCA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	19, 68
PkrI	GCNGC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	123, 165
SatI	GCNGC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	5 cut(s)	17, 81, 105, 212, 222
SfaNI	GCATC	2 cut(s)	79, 130
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	128
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	19, 68
Tru1I	TTAA	2 cut(s)	123, 165
Tru9I	TTAA	2 cut(s)	123, 165
TseI	GCWGC	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	123
XmaJI	CCTAGG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.