Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015431

Physical Location & Seq

Genomic Coordinates Reverse (-)

10679782 .. 10682885

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGCACTAATCTGATAGCATTCGGAGGCGGTGGAGGAGTAGCAGTAGGCGGAGGAGTGAGAGTTTCAACGGCGACACCGTGGGCTGTGAGAGCAGAACTCCCCAAAGCTCCTGACCTGAGCGTTGACCGCTCCATTTTGCGAAGTGGGTCTTCCTCGTCTCGCCGTCATGACCTCGTTTTCGTCGTCAATCCTAGCAGTGCGAATGGGAGGACTGGGAAGGAGTGGAAGAAGCTGCTTCCATATCTAAGGTCTCGCCTTGGTGCTGATTGTAATATACGTGAATCTTTAACATCAGGCCCGTCTCATGCAATTGACATAACGAGGGAGGCCATACGTGAGGGAGCTGATGCTGTAATCGCGGTGGGAGGAGATGGAACTCTGCATGAGGTTGTTAATGGATTCTTTTGGGCAGGAAAAACTGTTACTAATTATGATAGGGATGCCACCCATTCAACTGCACTTGGTCTCATTCCTTTGGGGACTGGATCTGATTTTGCCAGAACATTTGGCTGGAAAAATGATCCCCATGAAGCCATTGACCGTATAGCCAAAGGGCAGAGATCACAGATTGATGTTGGTGTTATTAGTGGAGAAGATAATGGAGAACCTCATTACTTTGCTAATGTTGCTGACATTCATTTGAGTGCAAAAGCAGGATTCCATGCTTCTAGTTACAAGAGATTTGGAAACTTGTGCTACGTTATTGGTTCATTAAAAGCTTTTGTTGGGCACCGTAATCAGGACCTTAAAATCAAGGTCAATGAAGGGGAGTGGGAAGTATACTCTCAAGTAACTGCCCTTTGTGTTGGAAATGCAAAATACTTTGGTGGTGGTATGAAAATTACACCAAATGCTGACCCTCGCAGCGGCAATTTTGAGGTTGTGATCCTTCAAGGCTTCAAGTGGTATGACTTTATTCTAAAGCTACATAAGCTCTACAATGGGATGCATCTAACAATGAAAAATGTATCTTCAAGAAGCGTGCATTCTATTGAGGTGGAAGACATTTCAGGCAGTTGCAGCATTTATGTTCAATCTGACGGCGAACATCTAGGATTCCTGCCTAGGAAGTTTTGTATATTACCTTCTGCAATCGAAATGATATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006066 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006671 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009247 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0019751 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0046519 GO:0050896 GO:0071704 GO:0071944 GO:0097164 GO:1901135 GO:1901137 GO:1901564 GO:1901576 GO:1901615 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

371

Amino Acids

40.01

Weight (kDa)

8.44

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46090
fragaria_vesca	FvH4_7g15100
malus_domestica	MD01G1069600.v1.1 MD07G1132800.v1.1
prunus_persica	Prupe.2G175700_v2.0.a1
pyrus_communis	pycom01g09890 pycom07g12960
rosa_chinensis	RchiOBHm_Chr1g0357291
rosa_laevigata	RLG00000028030
rosa_rugosa	Rorug01G0256100
rosa_samantha	Rh1AG269400 Rh1BG237300 Rh1CG253600 Rh1DG265200
rosa_wichuraiana	Rw1G023860 Rw1G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	732
AccBSI	CCGCTC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	783
AccII	CGCG	1 cut(s)	362
AciI	CCGC	5 cut(s)	30, 51, 130, 362, 870
AclWI	GGATC	3 cut(s)	496, 518, 883
AfiI	CCNNNNNNNGG	2 cut(s)	742, 869
AgsI	TTSAA	6 cut(s)	69, 456, 896, 904, 978, 1037
AluBI	AGCT	6 cut(s)	110, 235, 347, 722, 928, 937
AluI	AGCT	6 cut(s)	110, 235, 347, 722, 928, 937
Alw26I	GTCTC	4 cut(s)	165, 258, 309, 473
AlwI	GGATC	3 cut(s)	496, 518, 883
AoxI	GGCC	2 cut(s)	298, 330
ApeKI	GCWGC	3 cut(s)	235, 867, 1023
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspA2I	CCTAGG	1 cut(s)	1067
AspS9I	GGNCC	2 cut(s)	299, 745
AvaII	GGWCC	1 cut(s)	745
AvrII	CCTAGG	1 cut(s)	1067
BaeGI	GKGCMC	2 cut(s)	8, 735
BanI	GGYRCC	1 cut(s)	732
BarI	GAAGNNNNNNTAC	2 cut(s)	1072, 1104
BbsI	GAAGAC	2 cut(s)	144, 1011
BbvI	GCAGC	3 cut(s)	222, 879, 1035
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	3 cut(s)	87, 150, 1060
BcoDI	GTCTC	4 cut(s)	165, 258, 309, 473
BfaI	CTAG	4 cut(s)	195, 672, 1055, 1068
BisI	GCNGC	4 cut(s)	236, 868, 871, 1024
BlnI	CCTAGG	1 cut(s)	1067
BlsI	GCNGC	4 cut(s)	237, 869, 872, 1025
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	2 cut(s)	299, 745
BmiI	GGNNCC	1 cut(s)	734
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	4 cut(s)	340, 433, 939, 961
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	2 cut(s)	144, 1011
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	774
BsaAI	YACGTR	2 cut(s)	281, 338
BsaI	GGTCTC	2 cut(s)	258, 473
BsaJI	CCNNGG	3 cut(s)	80, 259, 1067
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 48, 60, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	742, 869
Bse1I	ACTGG	2 cut(s)	220, 490
BseDI	CCNNGG	3 cut(s)	80, 259, 1067
BseGI	GGATG	2 cut(s)	448, 954
BseLI	CCNNNNNNNGG	2 cut(s)	742, 869
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	220, 490
BseRI	GAGGAG	3 cut(s)	51, 69, 384
BseSI	GKGCMC	2 cut(s)	8, 735
BseXI	GCAGC	3 cut(s)	222, 879, 1035
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	300, 332
BshNI	GGYRCC	1 cut(s)	732
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	2 cut(s)	742, 869
BsmAI	GTCTC	4 cut(s)	165, 258, 309, 473
BsmBI	CGTCTC	2 cut(s)	165, 309
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	2 cut(s)	20, 988
BsnI	GGCC	2 cut(s)	300, 332
Bso31I	GGTCTC	2 cut(s)	258, 473
Bsp1286I	GDGCHC	2 cut(s)	8, 735
Bsp143I	GATC	4 cut(s)	488, 523, 563, 888
BspACI	CCGC	5 cut(s)	30, 51, 130, 362, 870
BspANI	GGCC	2 cut(s)	300, 332
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	734
BspPI	GGATC	3 cut(s)	496, 518, 883
BspT107I	GGYRCC	1 cut(s)	732
BspTNI	GGTCTC	2 cut(s)	258, 473
BsrBI	CCGCTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	220, 490
BssECI	CCNNGG	3 cut(s)	80, 259, 1067
BssMI	GATC	4 cut(s)	488, 523, 563, 888
BssNAI	GTATAC	1 cut(s)	784
BssT1I	CCWWGG	2 cut(s)	259, 1067
Bst1107I	GTATAC	1 cut(s)	784
Bst4CI	ACNGT	4 cut(s)	81, 424, 545, 737
BstBAI	YACGTR	2 cut(s)	281, 338
BstC8I	GCNNGC	1 cut(s)	986
BstDEI	CTNAG	2 cut(s)	119, 248
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	448, 954
BstFNI	CGCG	1 cut(s)	362
BstKTI	GATC	4 cut(s)	491, 526, 566, 891
BstMAI	GTCTC	4 cut(s)	165, 258, 309, 473
BstMBI	GATC	4 cut(s)	488, 523, 563, 888
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 129, 359, 629, 934, 1023
BstSLI	GKGCMC	2 cut(s)	8, 735
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	222, 879, 1035
BstV2I	GAAGAC	2 cut(s)	144, 1011
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BstZ17I	GTATAC	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	300, 332
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	448, 954
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	986
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	299, 745
CviAII	CATG	5 cut(s)	170, 308, 386, 530, 665
DdeI	CTNAG	2 cut(s)	119, 248
DpnI	GATC	4 cut(s)	490, 525, 565, 890
DpnII	GATC	4 cut(s)	488, 523, 563, 888
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	259, 1067
Eco31I	GGTCTC	2 cut(s)	258, 473
Eco47I	GGWCC	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	259, 1067
EcoT22I	ATGCAT	1 cut(s)	954
ErhI	CCWWGG	2 cut(s)	259, 1067
Esp3I	CGTCTC	2 cut(s)	165, 309
FaeI	CATG	5 cut(s)	173, 311, 389, 533, 668
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	5 cut(s)	169, 307, 385, 529, 664
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	4 cut(s)	236, 868, 871, 1024
FokI	GGATG	2 cut(s)	455, 961
Fsp4HI	GCNGC	4 cut(s)	236, 868, 871, 1024
FspBI	CTAG	4 cut(s)	195, 672, 1055, 1068
GluI	GCNGC	4 cut(s)	236, 868, 871, 1024
HaeIII	GGCC	2 cut(s)	300, 332
Hin1II	CATG	5 cut(s)	173, 311, 389, 533, 668
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	4 cut(s)	284, 402, 660, 1059
Hpy166II	GTNNAC	2 cut(s)	127, 784
Hpy188I	TCNGA	4 cut(s)	15, 26, 493, 1042
Hpy188III	TCNNGA	4 cut(s)	113, 170, 743, 978
Hpy8I	GTNNAC	2 cut(s)	127, 784
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	4 cut(s)	214, 761, 902, 1098
HpyCH4III	ACNGT	4 cut(s)	81, 424, 545, 737
HpyCH4IV	ACGT	3 cut(s)	280, 337, 702
HpyCH4V	TGCA	9 cut(s)	311, 385, 461, 650, 818, 952, 988, 1023, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 129, 359, 629, 934, 1023
HpyF3I	CTNAG	2 cut(s)	119, 248
HpySE526I	ACGT	3 cut(s)	280, 337, 702
Hsp92II	CATG	5 cut(s)	173, 311, 389, 533, 668
Kzo9I	GATC	4 cut(s)	488, 523, 563, 888
LmnI	GCTCC	3 cut(s)	115, 137, 344
Lsp1109I	GCAGC	3 cut(s)	222, 879, 1035
LweI	GCATC	4 cut(s)	340, 433, 939, 961
MaeI	CTAG	4 cut(s)	195, 672, 1055, 1068
MaeII	ACGT	3 cut(s)	280, 337, 702
MaeIII	GTNAC	3 cut(s)	424, 674, 793
MalI	GATC	4 cut(s)	490, 525, 565, 890
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	4 cut(s)	488, 523, 563, 888
MboII	GAAGA	5 cut(s)	144, 241, 608, 966, 1016
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	2 cut(s)	8, 735
MluCI	AATT	4 cut(s)	312, 430, 843, 874
MmeI	TCCRAC	1 cut(s)	790
Mph1103I	ATGCAT	1 cut(s)	954
MseI	TTAA	4 cut(s)	290, 396, 716, 750
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	870
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	20, 988
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	6 cut(s)	92, 129, 359, 629, 934, 1023
NdeII	GATC	4 cut(s)	488, 523, 563, 888
NlaIII	CATG	5 cut(s)	173, 311, 389, 533, 668
NlaIV	GGNNCC	1 cut(s)	734
NsiI	ATGCAT	1 cut(s)	954
PagI	TCATGA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 183
PctI	GAATGC	2 cut(s)	20, 988
PfeI	GAWTC	4 cut(s)	284, 402, 660, 1059
PkrI	GCNGC	4 cut(s)	237, 869, 872, 1025
Ppu21I	YACGTR	2 cut(s)	281, 338
PpuMI	RGGWCCY	1 cut(s)	745
Psp5II	RGGWCCY	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	2 cut(s)	299, 745
PspPPI	RGGWCCY	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	290, 396, 716, 750
SatI	GCNGC	4 cut(s)	236, 868, 871, 1024
Sau3AI	GATC	4 cut(s)	488, 523, 563, 888
Sau96I	GGNCC	2 cut(s)	299, 745
SduI	GDGCHC	2 cut(s)	8, 735
SfaNI	GCATC	4 cut(s)	340, 433, 939, 961
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
Sse9I	AATT	4 cut(s)	312, 430, 843, 874
SsiI	CCGC	5 cut(s)	30, 51, 130, 362, 870
SspMI	CTAG	4 cut(s)	195, 672, 1055, 1068
StyI	CCWWGG	2 cut(s)	259, 1067
TaaI	ACNGT	4 cut(s)	81, 424, 545, 737
TaiI	ACGT	3 cut(s)	283, 340, 705
TaqI	TCGA	1 cut(s)	1098
TasI	AATT	4 cut(s)	312, 430, 843, 874
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	4 cut(s)	284, 402, 660, 1059
Tru1I	TTAA	4 cut(s)	290, 396, 716, 750
Tru9I	TTAA	4 cut(s)	290, 396, 716, 750
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	235, 867, 1023
TspDTI	ATGAA	6 cut(s)	546, 629, 702, 780, 854, 977
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	745
XmaJI	CCTAGG	1 cut(s)	1067
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	4 cut(s)	195, 672, 1055, 1068
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.