Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015431

Physical Location & Seq

Genomic Coordinates Forward (+)

14408297 .. 14411534

Gene Structure 3238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGCATTAATCTGATAGCATTCGGAGGCGGTGGTGGAATAGCAGTAGGAGTGAGATTTTCAATGGCGACATCATGGGCTGTGAGAGCCGAGCTCCCCAAAGCTCCTGATTTGTGCGCTGACCGCTCCATTCTGCGAAATGGGTCTTCCTCCTCTCGCCGCCGCGACCTCGTTTTCGTCGTCAATCCCAGCGGTGCGAATGGGAGGACAGGGACAGAGTGGAAGAAGCTGCTTCCGTATCTAAGGTCTCGCCTTGGCGCTGATTGCAATATATGTGAATCTTTGACATCAGGTCCTTCTCATGCGATTGACATAACGCGAGAGGCTATACGGGAAGGAGCTGATGCTGTAATTGTGGTGGGAGGAGATGGAACTCTGCATGAGGTTGTTAATGGATTCTTTTGGGCAGGAAAACCTGTTACTAATTATGATAGGGATGCCACCCGTTCAACTGCACTCAGTCTCATTCCTTTGGGGACAGGGTCAGATTTTGCCAGATCATTTGGCTGGAAAAATGATCCTTGTGAAGCCATTGACCGCATTGCCAAAGGGCAGAGATCATGGATAGATGTTGGTGTTATTAGTGGAGAAGACGGAGAACCTCATTACTTTGTTAATGTTGCTGACATTCATTTGAGTGCAAAAGCAGGATACCATGCTTCTAGTTTCAAGAGATTTGGAAACTTGTGCTACGTTATTGGTTCTTTAAAAGCCTTTGTTGGGCACCGTAATCAGGACCTTAAAATCAAGGTCAATGAAGGGGAGTGGGAAGTGTACTCTCAAGTAACAGCCCTTTGTGTTGGAAACGCAAAATACTTTGGTGGTGGTATGAAAATTACACCAAATGCTGACCCTCGCAGTGGCAGTTTTGAGGTTGTGATTCTTCAGGACTTCAAGTGGTATGACTTTATTCTGAAGCTACATAAGCTCTATAATGGGACACATCTAACAGTGAAAAATGTATCTTCGATAAGTGTGCATTCTATTGAGGTGGAAGACATTTCAGACAGTGGCAACATTTATGTTCAATCTGATGGCGAACATTTAGGATTCCTGCCAAGGAAGTTTAGTATATTACCTTCTGCAGTCGAGATGATATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006066 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006671 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009247 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0019751 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0046519 GO:0050896 GO:0071704 GO:0071944 GO:0097164 GO:1901135 GO:1901137 GO:1901564 GO:1901576 GO:1901615 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

368

Amino Acids

39.85

Weight (kDa)

7.13

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46090
fragaria_vesca	FvH4_7g15100
malus_domestica	MD01G1069600.v1.1 MD07G1132800.v1.1
prunus_persica	Prupe.2G175700_v2.0.a1
pyrus_communis	pycom01g09890 pycom07g12960
rosa_chinensis	RchiOBHm_Chr1g0357291
rosa_laevigata	RLG00000028030
rosa_rugosa	Rorug01G0256100
rosa_samantha	Rh1AG269400 Rh1BG237300 Rh1CG253600 Rh1DG265200
rosa_wichuraiana	Rw1G023860 Rw1G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AccBSI	CCGCTC	1 cut(s)	126
AccII	CGCG	2 cut(s)	165, 319
AciI	CCGC	6 cut(s)	30, 124, 160, 163, 192, 538
AclWI	GGATC	1 cut(s)	512
AcuI	CTGAAG	2 cut(s)	869, 935
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	3 cut(s)	720, 733, 860
AgsI	TTSAA	5 cut(s)	63, 450, 670, 895, 1028
AhdI	GACNNNNNGTC	1 cut(s)	291
AluBI	AGCT	6 cut(s)	94, 104, 229, 341, 919, 928
AluI	AGCT	6 cut(s)	94, 104, 229, 341, 919, 928
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	252, 467
AlwI	GGATC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AseI	ATTAAT	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	119, 260
AspS9I	GGNCC	2 cut(s)	293, 736
AvaII	GGWCC	2 cut(s)	293, 736
BaeGI	GKGCMC	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	1063, 1095
BbsI	GAAGAC	3 cut(s)	138, 597, 1002
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	362, 1028
BcgI	CGANNNNNNTGC	2 cut(s)	958, 992
BciVI	GTATCC	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	252, 467
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	1083
BfoI	RGCGCY	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	3 cut(s)	160, 163, 230
BlsI	GCNGC	3 cut(s)	161, 164, 231
Bme18I	GGWCC	2 cut(s)	293, 736
BmeRI	GACNNNNNGTC	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	293, 736
BmiI	GGNNCC	1 cut(s)	725
BmsI	GCATC	2 cut(s)	334, 427
BpiI	GAAGAC	3 cut(s)	138, 597, 1002
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpuEI	CTTGAG	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	253, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	720, 733, 860
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	253, 1058
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	720, 733, 860
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	142, 378
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	165, 319
BshNI	GGYRCC	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	96
BslFI	GGGAC	3 cut(s)	226, 490, 952
BslI	CCNNNNNNNGG	3 cut(s)	720, 733, 860
BsmAI	GTCTC	2 cut(s)	252, 467
BsmFI	GGGAC	3 cut(s)	226, 490, 952
BsmI	GAATGC	2 cut(s)	20, 979
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	96, 726
Bsp143I	GATC	3 cut(s)	497, 517, 557
BspACI	CCGC	6 cut(s)	30, 124, 160, 163, 192, 538
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	2 cut(s)	165, 319
BspLI	GGNNCC	1 cut(s)	725
BspMAI	CTGCAG	1 cut(s)	1087
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	253, 1058
BssMI	GATC	3 cut(s)	497, 517, 557
BssT1I	CCWWGG	2 cut(s)	253, 1058
Bst4CI	ACNGT	3 cut(s)	728, 952, 1010
BstDEI	CTNAG	2 cut(s)	242, 458
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	165, 319
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	119, 260
BstKTI	GATC	3 cut(s)	500, 520, 560
BstMAI	GTCTC	2 cut(s)	252, 467
BstMBI	GATC	3 cut(s)	497, 517, 557
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 123, 264, 925
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	726
BstUI	CGCG	2 cut(s)	165, 319
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	3 cut(s)	138, 597, 1002
BsuI	GTATCC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	865
BtsIMutI	CAGTG	3 cut(s)	865, 957, 1015
CfoI	GCGC	2 cut(s)	119, 260
Cfr13I	GGNCC	2 cut(s)	293, 736
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	5 cut(s)	75, 302, 380, 561, 656
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	2 cut(s)	242, 458
DpnI	GATC	3 cut(s)	499, 519, 559
DpnII	GATC	3 cut(s)	497, 517, 557
DraI	TTTAAA	1 cut(s)	708
DriI	GACNNNNNGTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	253, 1058
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	293, 736
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	869, 935
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	293, 736
EcoT14I	CCWWGG	2 cut(s)	253, 1058
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	253, 1058
FaeI	CATG	5 cut(s)	78, 305, 383, 564, 659
FaqI	GGGAC	3 cut(s)	226, 490, 952
FatI	CATG	5 cut(s)	74, 301, 379, 560, 655
Fnu4HI	GCNGC	3 cut(s)	160, 163, 230
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	160, 163, 230
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	118, 259
GluI	GCNGC	3 cut(s)	160, 163, 230
GsaI	CCCAGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	261
HhaI	GCGC	2 cut(s)	119, 260
Hin1II	CATG	5 cut(s)	78, 305, 383, 564, 659
Hin6I	GCGC	2 cut(s)	117, 258
HinP1I	GCGC	2 cut(s)	117, 258
HinfI	GANTC	4 cut(s)	278, 396, 880, 1050
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	6 cut(s)	15, 26, 487, 915, 1006, 1033
Hpy188III	TCNNGA	5 cut(s)	107, 670, 734, 887, 1090
Hpy8I	GTNNAC	1 cut(s)	775
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	306, 329, 752, 1089
HpyCH4III	ACNGT	3 cut(s)	728, 952, 1010
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	6 cut(s)	267, 379, 455, 641, 979, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 123, 264, 925
HpyF3I	CTNAG	2 cut(s)	242, 458
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	5 cut(s)	78, 305, 383, 564, 659
HspAI	GCGC	2 cut(s)	117, 258
Kzo9I	GATC	3 cut(s)	497, 517, 557
LmnI	GCTCC	4 cut(s)	99, 109, 131, 338
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	334, 427
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	418, 784
MalI	GATC	3 cut(s)	499, 519, 559
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	3 cut(s)	497, 517, 557
MboII	GAAGA	6 cut(s)	138, 235, 602, 875, 957, 1007
MhlI	GDGCHC	2 cut(s)	96, 726
MluCI	AATT	3 cut(s)	351, 424, 834
MmeI	TCCRAC	1 cut(s)	781
MseI	TTAA	5 cut(s)	9, 390, 615, 707, 741
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	192
Mva1269I	GAATGC	2 cut(s)	20, 979
MvnI	CGCG	2 cut(s)	165, 319
MwoI	GCNNNNNNNGC	4 cut(s)	86, 123, 264, 925
NdeII	GATC	3 cut(s)	497, 517, 557
NlaIII	CATG	5 cut(s)	78, 305, 383, 564, 659
NlaIV	GGNNCC	1 cut(s)	725
NmeAIII	GCCGAG	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	20, 979
PfeI	GAWTC	4 cut(s)	278, 396, 880, 1050
PflFI	GACNNNGTC	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	161, 164, 231
PpuMI	RGGWCCY	2 cut(s)	293, 736
PshBI	ATTAAT	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	2 cut(s)	293, 736
PspFI	CCCAGC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	725
PspPI	GGNCC	2 cut(s)	293, 736
PspPPI	RGGWCCY	2 cut(s)	293, 736
PstI	CTGCAG	1 cut(s)	1087
PsyI	GACNNNGTC	1 cut(s)	481
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	5 cut(s)	9, 390, 615, 707, 741
SatI	GCNGC	3 cut(s)	160, 163, 230
Sau3AI	GATC	3 cut(s)	497, 517, 557
Sau96I	GGNCC	2 cut(s)	293, 736
SduI	GDGCHC	2 cut(s)	96, 726
SfaNI	GCATC	2 cut(s)	334, 427
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	2 cut(s)	293, 736
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
Sse9I	AATT	3 cut(s)	351, 424, 834
SsiI	CCGC	6 cut(s)	30, 124, 160, 163, 192, 538
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	253, 1058
TaaI	ACNGT	3 cut(s)	728, 952, 1010
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	968, 1089
TasI	AATT	3 cut(s)	351, 424, 834
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	2 cut(s)	162, 165
TfiI	GAWTC	4 cut(s)	278, 396, 880, 1050
Tru1I	TTAA	5 cut(s)	9, 390, 615, 707, 741
Tru9I	TTAA	5 cut(s)	9, 390, 615, 707, 741
TscAI	CASTG	3 cut(s)	865, 957, 1015
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	620, 771, 845
TspGWI	ACGGA	2 cut(s)	225, 609
TspRI	CASTG	3 cut(s)	865, 957, 1015
Tth111I	GACNNNGTC	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	293, 736
VspI	ATTAAT	1 cut(s)	9
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.