Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015431

Physical Location & Seq

Genomic Coordinates Reverse (-)

48224256 .. 48227506

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG265200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTAGCATTAATCAGATAGCATTGGGTTGCGGAATAGCTACAGTGAGACTTCCAATGGCGAAACCATCGTGGGCCGTCGTCAGAGCCGAGCTTCCCAAAGCCCCTGATCTCTATGCTGAGCGGTCTGTTTCCATAAGTGGGTCTTCCTCCTCTCGCCGGCGTGACCTCGTTTTCGTCGTCAATCCTTCAGGGGCTAATGGGAGGACTGGTAAGGAGTGGAAGAAGCTGCTTCCTTATTTGAGGTCTCGTCTTGGTGCTGATTGCAATATATGCGAGTCTTTAACATCGGGTCCTTCTCATGCAATCGACATAACACGGGAGGCTATACGGGAGGGTGCAGATGCTGTAATCGTGGTGGGAGGAGATGGAACTTTTCATGAGGTTGTGAATGGATTCTTTTGGGCCGGAAAACCTGTTACTAATTACGATAGAGAGGCCACCCATTCAACTGCCCTCGGTCTCATTCCGTTGGGAACTGGATCTGATTTTGCCAGATCATTTGGCTGGAAAAATAATCCTTACGAAGCCATCGAACGCATAGCCAAAGGACAGAGATCACGGATAGATGTTGGAGTTATTAGTAGAGAAACTGATGAACCTCATTACTTTATTAATGTTGCTGACATTCACTTGAGTGCAAAGGCAGGATACCATGCTTCTAAATACAAGAGATTCGGAAACTTGTGCTATGTTATTGGTGCTTTGAAAGGCTTTATTGGGCACCGTAATCAGGACCTTAAGATCAAGGTCAATGAAGGGGAGTGGGAAGTATATCCTCAAGTAACAGCCCTTTGCATTGGAAATGCAAAATACTTTGGTGGTGGCATGAAAATTACACCAAATGCTGATCCCCAGAATGGAAAATTTGAGGTTGTGATTCTTCAGGACTTCAAGTGGTATGACTTCGTCTTGAAGCTACATAAGCTGTACAATGGGACTCATCTATCGGTGGAAAATGTATCTTCAAGAAGCGTACATTCTATTGAAGTGGAGGAAATTTCTGGATGTGACAGCATTTATGTTCAATCAGATGGTGAACATTTAGGATTCCTGCCTAGGAAATTTTGTATATTACCTTCTGCTGTCGAGATGATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006066 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006671 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009247 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0019751 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0046519 GO:0050896 GO:0071704 GO:0071944 GO:0097164 GO:1901135 GO:1901137 GO:1901564 GO:1901576 GO:1901615 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

367

Amino Acids

40.32

Weight (kDa)

8.32

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	57 - 193	2e-28	Diacylglycerol kinase catalytic domain
YegS_C	PF19279	214 - 366	6.3e-25	YegS C-terminal NAD kinase beta sandwich-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46090
fragaria_vesca	FvH4_7g15100
malus_domestica	MD01G1069600.v1.1 MD07G1132800.v1.1
prunus_persica	Prupe.2G175700_v2.0.a1
pyrus_communis	pycom01g09890 pycom07g12960
rosa_chinensis	RchiOBHm_Chr1g0357291
rosa_laevigata	RLG00000028030
rosa_rugosa	Rorug01G0256100
rosa_samantha	Rh1AG269400 Rh1BG237300 Rh1CG253600 Rh1DG265200
rosa_wichuraiana	Rw1G023860 Rw1G024000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	2 cut(s)	33, 124
AclWI	GGATC	2 cut(s)	490, 845
AcsI	RAATTY	3 cut(s)	866, 999, 1064
AcuI	CTGAAG	2 cut(s)	174, 869
AfaI	GTAC	2 cut(s)	932, 978
AfiI	CCNNNNNNNGG	4 cut(s)	141, 159, 733, 860
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	450, 709, 895, 916, 969, 989, 1028
AleI	CACNNNNGTG	1 cut(s)	636
AluBI	AGCT	5 cut(s)	41, 94, 229, 919, 928
AluI	AGCT	5 cut(s)	41, 94, 229, 919, 928
Alw26I	GTCTC	3 cut(s)	43, 252, 467
AlwI	GGATC	2 cut(s)	490, 845
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	3 cut(s)	75, 405, 438
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	866, 999, 1064
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AseI	ATTAAT	2 cut(s)	12, 615
Asp700I	GAANNNNTTC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	1058
AspS9I	GGNCC	4 cut(s)	75, 293, 405, 736
AsuHPI	GGTGA	1 cut(s)	1049
AvaII	GGWCC	2 cut(s)	293, 736
AvrII	CCTAGG	1 cut(s)	1058
BaeGI	GKGCMC	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	723
BarI	GAAGNNNNNNTAC	2 cut(s)	1063, 1095
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	4 cut(s)	76, 362, 539, 1028
BceAI	ACGGC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	43, 252, 467
BfaI	CTAG	1 cut(s)	1059
BfmI	CTRYAG	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	1 cut(s)	230
BlnI	CCTAGG	1 cut(s)	1058
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	231
Bme18I	GGWCC	2 cut(s)	293, 736
BmgT120I	GGNCC	4 cut(s)	75, 293, 405, 736
BmiI	GGNNCC	2 cut(s)	294, 725
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	655, 765
BsaI	GGTCTC	2 cut(s)	252, 467
BsaJI	CCNNGG	2 cut(s)	457, 1058
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 159, 733, 860
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	214, 484
BseDI	CCNNGG	2 cut(s)	457, 1058
BseGI	GGATG	1 cut(s)	1013
BseLI	CCNNNNNNNGG	4 cut(s)	141, 159, 733, 860
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	214, 484
BseRI	GAGGAG	2 cut(s)	142, 378
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	77, 407, 440
BshNI	GGYRCC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	160, 408
BslFI	GGGAC	1 cut(s)	952
BslI	CCNNNNNNNGG	4 cut(s)	141, 159, 733, 860
BsmAI	GTCTC	3 cut(s)	43, 252, 467
BsmFI	GGGAC	1 cut(s)	952
BsnI	GGCC	3 cut(s)	77, 407, 440
Bso31I	GGTCTC	2 cut(s)	252, 467
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	33, 124
BspANI	GGCC	3 cut(s)	77, 407, 440
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	294, 725
BspPI	GGATC	2 cut(s)	490, 845
BspT107I	GGYRCC	1 cut(s)	723
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	2 cut(s)	252, 467
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	214, 484
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	457, 1058
BssMI	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
BssT1I	CCWWGG	1 cut(s)	1058
Bst4CI	ACNGT	2 cut(s)	46, 728
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	930
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	1013
BstKTI	GATC	6 cut(s)	112, 485, 500, 560, 747, 853
BstMAI	GTCTC	3 cut(s)	43, 252, 467
BstMBI	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 925
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	644
BsuRI	GGCC	3 cut(s)	77, 407, 440
BtsCI	GGATG	1 cut(s)	1013
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	4 cut(s)	75, 293, 405, 736
Csp6I	GTAC	2 cut(s)	931, 977
CviAII	CATG	4 cut(s)	302, 380, 656, 829
CviQI	GTAC	2 cut(s)	931, 977
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	6 cut(s)	111, 484, 499, 559, 746, 852
DpnII	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
Eco130I	CCWWGG	1 cut(s)	1058
Eco31I	GGTCTC	2 cut(s)	252, 467
Eco47I	GGWCC	2 cut(s)	293, 736
Eco57I	CTGAAG	2 cut(s)	174, 869
EcoO109I	RGGNCCY	2 cut(s)	293, 736
EcoT14I	CCWWGG	1 cut(s)	1058
ErhI	CCWWGG	1 cut(s)	1058
FaeI	CATG	4 cut(s)	305, 383, 659, 832
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	1 cut(s)	952
FatI	CATG	4 cut(s)	301, 379, 655, 828
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	1020
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	1059
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	77, 407, 440
HapII	CCGG	2 cut(s)	160, 408
Hin1II	CATG	4 cut(s)	305, 383, 659, 832
HinfI	GANTC	6 cut(s)	278, 396, 675, 880, 940, 1050
HpaII	CCGG	2 cut(s)	160, 408
HphI	GGTGA	1 cut(s)	1049
Hpy166II	GTNNAC	1 cut(s)	1040
Hpy188I	TCNGA	5 cut(s)	18, 86, 487, 680, 1033
Hpy188III	TCNNGA	7 cut(s)	380, 734, 887, 913, 969, 1005, 1090
Hpy8I	GTNNAC	1 cut(s)	1040
Hpy99I	CGWCG	2 cut(s)	83, 182
HpyAV	CCTTC	4 cut(s)	198, 306, 752, 1089
HpyCH4III	ACNGT	2 cut(s)	46, 728
HpyCH4V	TGCA	6 cut(s)	267, 305, 341, 641, 798, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 925
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	305, 383, 659, 832
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	1059
MaeIII	GTNAC	4 cut(s)	164, 418, 784, 1010
MalI	GATC	6 cut(s)	111, 484, 499, 559, 746, 852
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
MboII	GAAGA	4 cut(s)	138, 235, 875, 957
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	726
MluCI	AATT	5 cut(s)	424, 834, 866, 999, 1064
MlyI	GAGTC	2 cut(s)	287, 934
MmeI	TCCRAC	1 cut(s)	553
MreI	CGCCGGCG	1 cut(s)	159
MroNI	GCCGGC	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	4 cut(s)	12, 284, 615, 741
MslI	CAYNNNNRTG	1 cut(s)	636
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	2 cut(s)	160, 408
MwoI	GCNNNNNNNGC	2 cut(s)	273, 925
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	4 cut(s)	305, 383, 659, 832
NlaIV	GGNNCC	2 cut(s)	294, 725
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	164, 1010
OliI	CACNNNNGTG	1 cut(s)	636
PagI	TCATGA	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 177, 531
PdiI	GCCGGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	396, 675, 880, 1050
PflFI	GACNNNGTC	1 cut(s)	908
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	2 cut(s)	286, 934
PpsI	GAGTC	2 cut(s)	286, 934
PpuMI	RGGWCCY	2 cut(s)	293, 736
PshBI	ATTAAT	2 cut(s)	12, 615
Psp5II	RGGWCCY	2 cut(s)	293, 736
PspN4I	GGNNCC	2 cut(s)	294, 725
PspPI	GGNCC	4 cut(s)	75, 293, 405, 736
PspPPI	RGGWCCY	2 cut(s)	293, 736
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	482
PsyI	GACNNNGTC	1 cut(s)	908
RsaI	GTAC	2 cut(s)	932, 978
RsaNI	GTAC	2 cut(s)	931, 977
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	12, 284, 615, 741
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	6 cut(s)	109, 482, 497, 557, 744, 850
Sau96I	GGNCC	4 cut(s)	75, 293, 405, 736
SchI	GAGTC	2 cut(s)	287, 934
SduI	GDGCHC	1 cut(s)	726
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	293, 736
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	634, 740, 780
SmoI	CTYRAG	3 cut(s)	634, 740, 780
Sse9I	AATT	5 cut(s)	424, 834, 866, 999, 1064
SsiI	CCGC	2 cut(s)	33, 124
SspMI	CTAG	1 cut(s)	1059
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	2 cut(s)	46, 728
TaqI	TCGA	3 cut(s)	309, 534, 1089
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	5 cut(s)	424, 834, 866, 999, 1064
TatI	WGTACW	1 cut(s)	930
TfiI	GAWTC	4 cut(s)	396, 675, 880, 1050
Tru1I	TTAA	4 cut(s)	12, 284, 615, 741
Tru9I	TTAA	4 cut(s)	12, 284, 615, 741
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	164, 1010
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	2 cut(s)	164, 1010
TspDTI	ATGAA	4 cut(s)	368, 612, 771, 845
TspGWI	ACGGA	2 cut(s)	459, 577
TspRI	CASTG	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	908
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	293, 736
VspI	ATTAAT	2 cut(s)	12, 615
XapI	RAATTY	3 cut(s)	866, 999, 1064
XmaJI	CCTAGG	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.