isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01290 AT4G01290 |
| fragaria_vesca | FvH4_7g15120 |
| malus_domestica | MD01G1069900.v1.1 MD07G1132600.v1.1 |
| prunus_persica | Prupe.2G176000_v2.0.a1 |
| pyrus_communis | pycom01g09910 pycom07g12940 |
| rosa_chinensis | RchiOBHm_Chr1g0357311 |
| rosa_laevigata | RLG00000028028 |
| rosa_multiflora | Rmu_sc0000316.1_g000002 Rmu_sc0011531.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00298860 |
| rosa_rugosa | Rorug01G0256200 |
| rosa_samantha | Rh1AG269600 Rh1BG237500 Rh1CG253800 Rh1DG265400 |
| rosa_wichuraiana | Rw1G023880 Rw1G023980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 3021, 3085 |
| Acc36I | ACCTGC | 4 cut(s) | 472, 1705, 3021, 3085 |
| AccB1I | GGYRCC | 3 cut(s) | 1241, 2057, 2242 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 53, 368 |
| AccI | GTMKAC | 1 cut(s) | 33 |
| AccII | CGCG | 2 cut(s) | 71, 649 |
| AciI | CCGC | 7 cut(s) | 71, 472, 649, 2061, 3005, 3183, 3291 |
| AclI | AACGTT | 1 cut(s) | 680 |
| AclWI | GGATC | 5 cut(s) | 253, 1623, 1636, 2216, 2861 |
| AcoI | YGGCCR | 3 cut(s) | 55, 359, 473 |
| AcsI | RAATTY | 3 cut(s) | 164, 1051, 2620 |
| AcuI | CTGAAG | 2 cut(s) | 815, 2061 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 5 cut(s) | 913, 969, 1183, 1882, 3311 |
| AflII | CTTAAG | 1 cut(s) | 1021 |
| AflIII | ACRYGT | 1 cut(s) | 1799 |
| AhlI | ACTAGT | 2 cut(s) | 275, 2306 |
| AjiI | CACGTC | 1 cut(s) | 40 |
| AjnI | CCWGG | 3 cut(s) | 973, 1885, 2809 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 111, 143, 2121, 2153 |
| AleI | CACNNNNGTG | 2 cut(s) | 836, 2588 |
| Alw21I | GWGCWC | 3 cut(s) | 1505, 2179, 3070 |
| Alw26I | GTCTC | 5 cut(s) | 471, 856, 896, 1487, 2390 |
| Alw44I | GTGCAC | 1 cut(s) | 3066 |
| AlwI | GGATC | 5 cut(s) | 253, 1623, 1636, 2216, 2861 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 793, 2186, 2705 |
| Ama87I | CYCGRG | 1 cut(s) | 900 |
| AoxI | GGCC | 5 cut(s) | 55, 359, 473, 1336, 2197 |
| ApaI | GGGCCC | 1 cut(s) | 2201 |
| ApaLI | GTGCAC | 1 cut(s) | 3066 |
| ApeKI | GCWGC | 9 cut(s) | 265, 635, 950, 1858, 1909, 2504, 2612, 3148, 3185 |
| ApoI | RAATTY | 3 cut(s) | 164, 1051, 2620 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 976, 1008, 3317 |
| AseI | ATTAAT | 1 cut(s) | 2832 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 514, 1845 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| AsuC2I | CCSGG | 1 cut(s) | 3145 |
| AsuHPI | GGTGA | 6 cut(s) | 92, 827, 1628, 2954, 3002, 3266 |
| AsuII | TTCGAA | 1 cut(s) | 2425 |
| AvaI | CYCGRG | 1 cut(s) | 900 |
| AvaII | GGWCC | 8 cut(s) | 98, 317, 1010, 1391, 2294, 2684, 2780, 3140 |
| AxyI | CCTNAGG | 1 cut(s) | 2484 |
| BaeGI | GKGCMC | 3 cut(s) | 2201, 3070, 3318 |
| BalI | TGGCCA | 1 cut(s) | 57 |
| BamHI | GGATCC | 1 cut(s) | 1628 |
| BanI | GGYRCC | 3 cut(s) | 1241, 2057, 2242 |
| BanII | GRGCYC | 2 cut(s) | 1505, 2201 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1165, 1197 |
| BbsI | GAAGAC | 2 cut(s) | 1812, 2532 |
| Bbv12I | GWGCWC | 3 cut(s) | 1505, 2179, 3070 |
| BbvI | GCAGC | 9 cut(s) | 252, 647, 937, 1870, 1921, 2516, 2624, 3160, 3172 |
| BceAI | ACGGC | 2 cut(s) | 374, 2359 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 247, 281, 627, 661 |
| BciT130I | CCWGG | 3 cut(s) | 975, 1887, 2811 |
| BciVI | GTATCC | 1 cut(s) | 649 |
| BclI | TGATCA | 1 cut(s) | 1657 |
| BcnI | CCSGG | 1 cut(s) | 3145 |
| BcoDI | GTCTC | 5 cut(s) | 471, 856, 896, 1487, 2390 |
| BcuI | ACTAGT | 2 cut(s) | 275, 2306 |
| BfaI | CTAG | 8 cut(s) | 276, 333, 525, 1307, 1560, 1671, 2307, 2381 |
| BfmI | CTRYAG | 5 cut(s) | 266, 543, 1431, 1698, 1734 |
| BfrI | CTTAAG | 1 cut(s) | 1021 |
| BfuAI | ACCTGC | 4 cut(s) | 472, 1705, 3021, 3085 |
| BfuI | GTATCC | 1 cut(s) | 649 |
| BmcAI | AGTACT | 3 cut(s) | 913, 1183, 1882 |
| Bme1390I | CCNGG | 4 cut(s) | 975, 1887, 2811, 3145 |
| Bme18I | GGWCC | 8 cut(s) | 98, 317, 1010, 1391, 2294, 2684, 2780, 3140 |
| BmeT110I | CYCGRG | 1 cut(s) | 900 |
| BmgBI | CACGTC | 1 cut(s) | 40 |
| BmrFI | CCNGG | 4 cut(s) | 975, 1887, 2811, 3145 |
| BmrI | ACTGGG | 1 cut(s) | 1356 |
| BmuI | ACTGGG | 1 cut(s) | 1356 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2805 |
| BpiI | GAAGAC | 2 cut(s) | 1812, 2532 |
| BpmI | CTGGAG | 1 cut(s) | 1300 |
| Bpu10I | CCTNAGC | 2 cut(s) | 489, 1905 |
| Bpu14I | TTCGAA | 1 cut(s) | 2425 |
| BpuEI | CTTGAG | 4 cut(s) | 1082, 1174, 1221, 3285 |
| BpuMI | CCSGG | 1 cut(s) | 3145 |
| Bsa29I | ATCGAT | 2 cut(s) | 257, 1820 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaI | GGTCTC | 1 cut(s) | 2390 |
| BsaJI | CCNNGG | 6 cut(s) | 367, 476, 973, 1886, 2375, 3143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2166, 2196 |
| Bse118I | RCCGGY | 1 cut(s) | 3197 |
| Bse21I | CCTNAGG | 1 cut(s) | 2484 |
| BseBI | CCWGG | 3 cut(s) | 975, 1887, 2811 |
| BseCI | ATCGAT | 2 cut(s) | 257, 1820 |
| BseDI | CCNNGG | 6 cut(s) | 367, 476, 973, 1886, 2375, 3143 |
| BseMII | CTCAG | 8 cut(s) | 480, 684, 1206, 1458, 1740, 1896, 2475, 2840 |
| BseRI | GAGGAG | 7 cut(s) | 874, 899, 1444, 2501, 2563, 2658, 3039 |
| BseSI | GKGCMC | 3 cut(s) | 2201, 3070, 3318 |
| BseXI | GCAGC | 9 cut(s) | 252, 647, 937, 1870, 1921, 2516, 2624, 3160, 3172 |
| BseYI | CCCAGC | 2 cut(s) | 533, 3042 |
| BsgI | GTGCAG | 1 cut(s) | 936 |
| Bsh1236I | CGCG | 2 cut(s) | 71, 649 |
| BshFI | GGCC | 5 cut(s) | 57, 361, 475, 1338, 2199 |
| BshNI | GGYRCC | 3 cut(s) | 1241, 2057, 2242 |
| BshVI | ATCGAT | 2 cut(s) | 257, 1820 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1505, 2179, 3070 |
| BsiHKCI | CYCGRG | 1 cut(s) | 900 |
| BsiSI | CCGG | 4 cut(s) | 11, 1632, 3145, 3198 |
| BsiWI | CGTACG | 1 cut(s) | 3309 |
| BslFI | GGGAC | 5 cut(s) | 1120, 1375, 2766, 3126, 3319 |
| BsmAI | GTCTC | 5 cut(s) | 471, 856, 896, 1487, 2390 |
| BsmBI | CGTCTC | 1 cut(s) | 896 |
| BsmFI | GGGAC | 5 cut(s) | 1120, 1375, 2766, 3126, 3319 |
| BsmI | GAATGC | 1 cut(s) | 3177 |
| BsnI | GGCC | 5 cut(s) | 57, 361, 475, 1338, 2199 |
| Bso31I | GGTCTC | 1 cut(s) | 2390 |
| BsoBI | CYCGRG | 1 cut(s) | 900 |
| Bsp119I | TTCGAA | 1 cut(s) | 2425 |
| Bsp120I | GGGCCC | 1 cut(s) | 2197 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1505, 2179, 2201, 3070, 3318 |
| Bsp143I | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| Bsp19I | CCATGG | 2 cut(s) | 367, 476 |
| BspACI | CCGC | 7 cut(s) | 71, 472, 649, 2061, 3005, 3183, 3291 |
| BspANI | GGCC | 5 cut(s) | 57, 361, 475, 1338, 2199 |
| BspCNI | CTCAG | 8 cut(s) | 481, 685, 1205, 1459, 1741, 1897, 2476, 2839 |
| BspDI | ATCGAT | 2 cut(s) | 257, 1820 |
| BspFNI | CGCG | 2 cut(s) | 71, 649 |
| BspHI | TCATGA | 1 cut(s) | 1543 |
| BspMAI | CTGCAG | 3 cut(s) | 270, 547, 1702 |
| BspMI | ACCTGC | 4 cut(s) | 472, 1705, 3021, 3085 |
| BspPI | GGATC | 5 cut(s) | 253, 1623, 1636, 2216, 2861 |
| BspQI | GCTCTTC | 2 cut(s) | 730, 2364 |
| BspT104I | TTCGAA | 1 cut(s) | 2425 |
| BspT107I | GGYRCC | 3 cut(s) | 1241, 2057, 2242 |
| BspTI | CTTAAG | 1 cut(s) | 1021 |
| BspTNI | GGTCTC | 1 cut(s) | 2390 |
| BsrFI | RCCGGY | 1 cut(s) | 3197 |
| BssAI | RCCGGY | 1 cut(s) | 3197 |
| BssECI | CCNNGG | 6 cut(s) | 367, 476, 973, 1886, 2375, 3143 |
| BssMI | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 2 cut(s) | 367, 476 |
| Bst2UI | CCWGG | 3 cut(s) | 975, 1887, 2811 |
| Bst6I | CTCTTC | 3 cut(s) | 714, 730, 2364 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstAFI | CTTAAG | 1 cut(s) | 1021 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2980 |
| BstBI | TTCGAA | 1 cut(s) | 2425 |
| BstC8I | GCNNGC | 3 cut(s) | 1160, 2509, 3183 |
| BstDSI | CCRYGG | 3 cut(s) | 367, 476, 2375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 333 |
| BstFNI | CGCG | 2 cut(s) | 71, 649 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstKTI | GATC | 9 cut(s) | 88, 257, 261, 1152, 1608, 1631, 1660, 2224, 2869 |
| BstMAI | GTCTC | 5 cut(s) | 471, 856, 896, 1487, 2390 |
| BstMBI | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 16, 478, 1301, 1310, 1909, 2980, 3013, 3194 |
| BstNI | CCWGG | 3 cut(s) | 975, 1887, 2811 |
| BstNSI | RCATGY | 2 cut(s) | 1082, 1803 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2805 |
| BstSCI | CCNGG | 4 cut(s) | 973, 1885, 2809, 3143 |
| BstSFI | CTRYAG | 5 cut(s) | 266, 543, 1431, 1698, 1734 |
| BstSLI | GKGCMC | 3 cut(s) | 2201, 3070, 3318 |
| BstUI | CGCG | 2 cut(s) | 71, 649 |
| BstV1I | GCAGC | 9 cut(s) | 252, 647, 937, 1870, 1921, 2516, 2624, 3160, 3172 |
| BstV2I | GAAGAC | 2 cut(s) | 1812, 2532 |
| BstX2I | RGATCY | 2 cut(s) | 1628, 2221 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 65, 838, 3284 |
| BstYI | RGATCY | 2 cut(s) | 1628, 2221 |
| Bsu15I | ATCGAT | 2 cut(s) | 257, 1820 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2484 |
| BsuI | GTATCC | 1 cut(s) | 649 |
| BsuRI | GGCC | 5 cut(s) | 57, 361, 475, 1338, 2199 |
| BsuTUI | ATCGAT | 2 cut(s) | 257, 1820 |
| BtgI | CCRYGG | 3 cut(s) | 367, 476, 2375 |
| BtgZI | GCGATG | 1 cut(s) | 3162 |
| BtrI | CACGTC | 1 cut(s) | 40 |
| BtsIMutI | CAGTG | 5 cut(s) | 833, 1464, 1955, 2037, 2928 |
| BveI | ACCTGC | 4 cut(s) | 472, 1705, 3021, 3085 |
| Cac8I | GCNNGC | 3 cut(s) | 1160, 2509, 3183 |
| CaiI | CAGNNNCTG | 3 cut(s) | 793, 2186, 2705 |
| CciI | TCATGA | 1 cut(s) | 1543 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Cfr10I | RCCGGY | 1 cut(s) | 3197 |
| ClaI | ATCGAT | 2 cut(s) | 257, 1820 |
| CseI | GACGC | 3 cut(s) | 16, 878, 1389 |
| Csp6I | GTAC | 5 cut(s) | 912, 968, 1182, 1881, 3310 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3142, 3177 |
| CviQI | GTAC | 5 cut(s) | 912, 968, 1182, 1881, 3310 |
| DpnI | GATC | 9 cut(s) | 87, 256, 260, 1151, 1607, 1630, 1659, 2223, 2868 |
| DpnII | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| DraI | TTTAAA | 1 cut(s) | 2632 |
| EaeI | YGGCCR | 3 cut(s) | 55, 359, 473 |
| Eam1104I | CTCTTC | 3 cut(s) | 714, 730, 2364 |
| EarI | CTCTTC | 3 cut(s) | 714, 730, 2364 |
| EciI | GGCGGA | 1 cut(s) | 2994 |
| Ecl136II | GAGCTC | 1 cut(s) | 1503 |
| Eco130I | CCWWGG | 2 cut(s) | 367, 476 |
| Eco24I | GRGCYC | 2 cut(s) | 1505, 2201 |
| Eco31I | GGTCTC | 1 cut(s) | 2390 |
| Eco47I | GGWCC | 8 cut(s) | 98, 317, 1010, 1391, 2294, 2684, 2780, 3140 |
| Eco53kI | GAGCTC | 1 cut(s) | 1503 |
| Eco57I | CTGAAG | 2 cut(s) | 815, 2061 |
| Eco81I | CCTNAGG | 1 cut(s) | 2484 |
| Eco88I | CYCGRG | 1 cut(s) | 900 |
| EcoICRI | GAGCTC | 1 cut(s) | 1503 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 333 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1391, 2197, 2780 |
| EcoRI | GAATTC | 2 cut(s) | 164, 2620 |
| EcoRII | CCWGG | 3 cut(s) | 973, 1885, 2809 |
| EcoT14I | CCWWGG | 2 cut(s) | 367, 476 |
| EcoT22I | ATGCAT | 3 cut(s) | 1297, 1939, 2985 |
| EcoT38I | GRGCYC | 2 cut(s) | 1505, 2201 |
| ErhI | CCWWGG | 2 cut(s) | 367, 476 |
| Esp3I | CGTCTC | 1 cut(s) | 896 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1093, 1125 |
| FaqI | GGGAC | 5 cut(s) | 1120, 1375, 2766, 3126, 3319 |
| FauI | CCCGC | 1 cut(s) | 3190 |
| FauNDI | CATATG | 1 cut(s) | 2985 |
| FbaI | TGATCA | 1 cut(s) | 1657 |
| FblI | GTMKAC | 1 cut(s) | 33 |
| FriOI | GRGCYC | 2 cut(s) | 1505, 2201 |
| FspBI | CTAG | 8 cut(s) | 276, 333, 525, 1307, 1560, 1671, 2307, 2381 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GsaI | CCCAGC | 2 cut(s) | 537, 3046 |
| GsuI | CTGGAG | 1 cut(s) | 1300 |
| HaeIII | GGCC | 5 cut(s) | 57, 361, 475, 1338, 2199 |
| HapII | CCGG | 4 cut(s) | 11, 1632, 3145, 3198 |
| HgaI | GACGC | 3 cut(s) | 16, 878, 1389 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HincII | GTYRAC | 3 cut(s) | 34, 699, 1274 |
| HindII | GTYRAC | 3 cut(s) | 34, 699, 1274 |
| HpaII | CCGG | 4 cut(s) | 11, 1632, 3145, 3198 |
| HphI | GGTGA | 6 cut(s) | 92, 827, 1628, 2954, 3002, 3266 |
| Hpy166II | GTNNAC | 9 cut(s) | 34, 540, 699, 1091, 1274, 2068, 2593, 2909, 3068 |
| Hpy8I | GTNNAC | 9 cut(s) | 34, 540, 699, 1091, 1274, 2068, 2593, 2909, 3068 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 35, 1405 |
| HpyAV | CCTTC | 9 cut(s) | 71, 109, 366, 441, 1404, 1575, 1960, 2036, 2843 |
| HpyCH4IV | ACGT | 6 cut(s) | 39, 680, 1353, 2015, 3192, 3308 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 16, 478, 1301, 1310, 1909, 2980, 3013, 3194 |
| HpySE526I | ACGT | 6 cut(s) | 39, 680, 1353, 2015, 3192, 3308 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| HspAI | GCGC | 1 cut(s) | 69 |
| KflI | GGGWCCC | 1 cut(s) | 2780 |
| Ksp22I | TGATCA | 1 cut(s) | 1657 |
| Kzo9I | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| LguI | GCTCTTC | 2 cut(s) | 730, 2364 |
| LmnI | GCTCC | 6 cut(s) | 886, 1457, 2045, 2174, 2230, 2757 |
| Lsp1109I | GCAGC | 9 cut(s) | 252, 647, 937, 1870, 1921, 2516, 2624, 3160, 3172 |
| MaeI | CTAG | 8 cut(s) | 276, 333, 525, 1307, 1560, 1671, 2307, 2381 |
| MaeII | ACGT | 6 cut(s) | 39, 680, 1353, 2015, 3192, 3308 |
| MaeIII | GTNAC | 8 cut(s) | 80, 401, 413, 1227, 1742, 2254, 2321, 2695 |
| MalI | GATC | 9 cut(s) | 87, 256, 260, 1151, 1607, 1630, 1659, 2223, 2868 |
| MboI | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| MflI | RGATCY | 2 cut(s) | 1628, 2221 |
| MhlI | GDGCHC | 5 cut(s) | 1505, 2179, 2201, 3070, 3318 |
| MlsI | TGGCCA | 1 cut(s) | 57 |
| MluNI | TGGCCA | 1 cut(s) | 57 |
| MlyI | GAGTC | 4 cut(s) | 410, 1279, 2318, 2795 |
| MmeI | TCCRAC | 2 cut(s) | 1874, 2152 |
| Mox20I | TGGCCA | 1 cut(s) | 57 |
| Mph1103I | ATGCAT | 3 cut(s) | 1297, 1939, 2985 |
| MroXI | GAANNNNTTC | 2 cut(s) | 514, 1845 |
| MscI | TGGCCA | 1 cut(s) | 57 |
| MslI | CAYNNNNRTG | 5 cut(s) | 836, 1032, 1173, 2588, 3242 |
| Msp20I | TGGCCA | 1 cut(s) | 57 |
| MspA1I | CMGCKG | 3 cut(s) | 533, 1912, 3185 |
| MspCI | CTTAAG | 1 cut(s) | 1021 |
| MspI | CCGG | 4 cut(s) | 11, 1632, 3145, 3198 |
| MspR9I | CCNGG | 4 cut(s) | 975, 1887, 2811, 3145 |
| Mva1269I | GAATGC | 1 cut(s) | 3177 |
| MvaI | CCWGG | 3 cut(s) | 975, 1887, 2811 |
| MvnI | CGCG | 2 cut(s) | 71, 649 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 16, 478, 1301, 1310, 1909, 2980, 3013, 3194 |
| NciI | CCSGG | 1 cut(s) | 3145 |
| NcoI | CCATGG | 2 cut(s) | 367, 476 |
| NdeI | CATATG | 1 cut(s) | 2985 |
| NdeII | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| NmeAIII | GCCGAG | 1 cut(s) | 448 |
| NmuCI | GTSAC | 7 cut(s) | 80, 401, 413, 1227, 2254, 2321, 2695 |
| NsiI | ATGCAT | 3 cut(s) | 1297, 1939, 2985 |
| NspI | RCATGY | 2 cut(s) | 1082, 1803 |
| NspV | TTCGAA | 1 cut(s) | 2425 |
| OliI | CACNNNNGTG | 2 cut(s) | 836, 2588 |
| PagI | TCATGA | 1 cut(s) | 1543 |
| PaqCI | CACCTGC | 2 cut(s) | 3021, 3085 |
| PciI | ACATGT | 1 cut(s) | 1799 |
| PciSI | GCTCTTC | 2 cut(s) | 730, 2364 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 36 |
| PctI | GAATGC | 1 cut(s) | 3177 |
| PdmI | GAANNNNTTC | 2 cut(s) | 514, 1845 |
| Pfl23II | CGTACG | 1 cut(s) | 3309 |
| PflFI | GACNNNGTC | 1 cut(s) | 38 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 53, 368 |
| PleI | GAGTC | 4 cut(s) | 410, 1278, 2318, 2795 |
| PpsI | GAGTC | 4 cut(s) | 410, 1278, 2318, 2795 |
| PpuMI | RGGWCCY | 2 cut(s) | 1391, 2780 |
| PscI | ACATGT | 1 cut(s) | 1799 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2805 |
| PshBI | ATTAAT | 1 cut(s) | 2832 |
| Psp124BI | GAGCTC | 1 cut(s) | 1505 |
| Psp1406I | AACGTT | 1 cut(s) | 680 |
| Psp5II | RGGWCCY | 2 cut(s) | 1391, 2780 |
| Psp6I | CCWGG | 3 cut(s) | 973, 1885, 2809 |
| PspFI | CCCAGC | 2 cut(s) | 533, 3042 |
| PspGI | CCWGG | 3 cut(s) | 973, 1885, 2809 |
| PspLI | CGTACG | 1 cut(s) | 3309 |
| PspOMI | GGGCCC | 1 cut(s) | 2197 |
| PspPPI | RGGWCCY | 2 cut(s) | 1391, 2780 |
| PstI | CTGCAG | 3 cut(s) | 270, 547, 1702 |
| PstNI | CAGNNNCTG | 3 cut(s) | 793, 2186, 2705 |
| PsuI | RGATCY | 2 cut(s) | 1628, 2221 |
| PsyI | GACNNNGTC | 1 cut(s) | 38 |
| PvuII | CAGCTG | 2 cut(s) | 533, 1912 |
| RsaI | GTAC | 5 cut(s) | 913, 969, 1183, 1882, 3311 |
| RsaNI | GTAC | 5 cut(s) | 912, 968, 1182, 1881, 3310 |
| RseI | CAYNNNNRTG | 5 cut(s) | 836, 1032, 1173, 2588, 3242 |
| SacI | GAGCTC | 1 cut(s) | 1505 |
| SalI | GTCGAC | 1 cut(s) | 32 |
| SapI | GCTCTTC | 2 cut(s) | 730, 2364 |
| Sau3AI | GATC | 9 cut(s) | 85, 254, 258, 1149, 1605, 1628, 1657, 2221, 2866 |
| ScaI | AGTACT | 3 cut(s) | 913, 1183, 1882 |
| SchI | GAGTC | 4 cut(s) | 410, 1279, 2318, 2795 |
| ScrFI | CCNGG | 4 cut(s) | 975, 1887, 2811, 3145 |
| SduI | GDGCHC | 5 cut(s) | 1505, 2179, 2201, 3070, 3318 |
| SfcI | CTRYAG | 5 cut(s) | 266, 543, 1431, 1698, 1734 |
| SfuI | TTCGAA | 1 cut(s) | 2425 |
| SinI | GGWCC | 8 cut(s) | 98, 317, 1010, 1391, 2294, 2684, 2780, 3140 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 836, 1032, 1173, 2588, 3242 |
| SmlI | CTYRAG | 5 cut(s) | 1021, 1061, 1153, 1236, 3300 |
| SmoI | CTYRAG | 5 cut(s) | 1021, 1061, 1153, 1236, 3300 |
| SpeI | ACTAGT | 2 cut(s) | 275, 2306 |
| SsiI | CCGC | 7 cut(s) | 71, 472, 649, 2061, 3005, 3183, 3291 |
| SspI | AATATT | 1 cut(s) | 231 |
| SspMI | CTAG | 8 cut(s) | 276, 333, 525, 1307, 1560, 1671, 2307, 2381 |
| SstI | GAGCTC | 1 cut(s) | 1505 |
| StyD4I | CCNGG | 4 cut(s) | 973, 1885, 2809, 3143 |
| StyI | CCWWGG | 2 cut(s) | 367, 476 |
| TaiI | ACGT | 6 cut(s) | 42, 683, 1356, 2018, 3195, 3311 |
| TatI | WGTACW | 3 cut(s) | 911, 1181, 1880 |
| TauI | GCSGC | 1 cut(s) | 475 |
| TscAI | CASTG | 5 cut(s) | 840, 1471, 1962, 2044, 2935 |
| TseFI | GTSAC | 7 cut(s) | 80, 401, 413, 1227, 2254, 2321, 2695 |
| TseI | GCWGC | 9 cut(s) | 265, 635, 950, 1858, 1909, 2504, 2612, 3148, 3185 |
| Tsp45I | GTSAC | 7 cut(s) | 80, 401, 413, 1227, 2254, 2321, 2695 |
| TspGWI | ACGGA | 3 cut(s) | 412, 979, 1215 |
| TspRI | CASTG | 5 cut(s) | 840, 1471, 1962, 2044, 2935 |
| Tth111I | GACNNNGTC | 1 cut(s) | 38 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 53, 368 |
| Vha464I | CTTAAG | 1 cut(s) | 1021 |
| VneI | GTGCAC | 1 cut(s) | 3066 |
| VpaK11BI | GGWCC | 8 cut(s) | 98, 317, 1010, 1391, 2294, 2684, 2780, 3140 |
| VspI | ATTAAT | 1 cut(s) | 2832 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 333 |
| XapI | RAATTY | 3 cut(s) | 164, 1051, 2620 |
| XbaI | TCTAGA | 1 cut(s) | 1306 |
| XceI | RCATGY | 2 cut(s) | 1082, 1803 |
| XmiI | GTMKAC | 1 cut(s) | 33 |
| XmnI | GAANNNNTTC | 2 cut(s) | 514, 1845 |
| XspI | CTAG | 8 cut(s) | 276, 333, 525, 1307, 1560, 1671, 2307, 2381 |
| ZrmI | AGTACT | 3 cut(s) | 913, 1183, 1882 |
| Zsp2I | ATGCAT | 3 cut(s) | 1297, 1939, 2985 |