isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01290 AT4G01290 |
| fragaria_vesca | FvH4_7g15120 |
| malus_domestica | MD01G1069900.v1.1 MD07G1132600.v1.1 |
| prunus_persica | Prupe.2G176000_v2.0.a1 |
| pyrus_communis | pycom01g09910 pycom07g12940 |
| rosa_chinensis | RchiOBHm_Chr1g0357311 |
| rosa_laevigata | RLG00000028028 |
| rosa_multiflora | Rmu_sc0000316.1_g000002 Rmu_sc0011531.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00298860 |
| rosa_rugosa | Rorug01G0256200 |
| rosa_samantha | Rh1AG269600 Rh1BG237500 Rh1CG253800 Rh1DG265400 |
| rosa_wichuraiana | Rw1G023880 Rw1G023980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1101 |
| Acc36I | ACCTGC | 3 cut(s) | 405, 1390, 1528 |
| AccB1I | GGYRCC | 2 cut(s) | 470, 1874 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 206, 892 |
| AccI | GTMKAC | 2 cut(s) | 86, 2357 |
| AccII | CGCG | 2 cut(s) | 286, 1479 |
| AccIII | TCCGGA | 2 cut(s) | 376, 2044 |
| AciI | CCGC | 7 cut(s) | 42, 405, 1245, 1878, 2028, 2285, 2720 |
| AclWI | GGATC | 4 cut(s) | 42, 1916, 2569, 2579 |
| AcoI | YGGCCR | 2 cut(s) | 2844, 2867 |
| AcsI | RAATTY | 6 cut(s) | 170, 904, 1075, 1845, 2347, 2551 |
| AcuI | CTGAAG | 2 cut(s) | 659, 2322 |
| AcyI | GRCGYC | 2 cut(s) | 2268, 2561 |
| AdeI | CACNNNGTG | 1 cut(s) | 113 |
| AfaI | GTAC | 5 cut(s) | 539, 961, 1036, 1583, 1707 |
| AflIII | ACRYGT | 1 cut(s) | 1622 |
| AgeI | ACCGGT | 2 cut(s) | 153, 988 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2254 |
| AjiI | CACGTC | 1 cut(s) | 1883 |
| AjnI | CCWGG | 3 cut(s) | 395, 826, 1924 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 843, 875, 1938, 1970 |
| Alw21I | GWGCWC | 3 cut(s) | 1996, 2752, 2785 |
| Alw26I | GTCTC | 3 cut(s) | 1820, 2509, 2818 |
| Alw44I | GTGCAC | 1 cut(s) | 2781 |
| AlwI | GGATC | 4 cut(s) | 42, 1916, 2569, 2579 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 637, 2909 |
| Ama87I | CYCGRG | 1 cut(s) | 2936 |
| Aor13HI | TCCGGA | 2 cut(s) | 376, 2044 |
| AoxI | GGCC | 9 cut(s) | 197, 406, 1321, 1406, 2014, 2279, 2500, 2844, 2867 |
| ApaI | GGGCCC | 1 cut(s) | 1325 |
| ApaLI | GTGCAC | 1 cut(s) | 2781 |
| ApeKI | GCWGC | 8 cut(s) | 272, 607, 1015, 1681, 1726, 1759, 2429, 3002 |
| ApoI | RAATTY | 6 cut(s) | 170, 904, 1075, 1845, 2347, 2551 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 2069, 2101, 3041 |
| AsiGI | ACCGGT | 2 cut(s) | 153, 988 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AsuC2I | CCSGG | 1 cut(s) | 2362 |
| AsuHPI | GGTGA | 8 cut(s) | 243, 278, 380, 1219, 1577, 2669, 2759, 2984 |
| AsuII | TTCGAA | 1 cut(s) | 1892 |
| AvaI | CYCGRG | 1 cut(s) | 2936 |
| AvaII | GGWCC | 7 cut(s) | 417, 1451, 1670, 2025, 2111, 2483, 2861 |
| BaeGI | GKGCMC | 4 cut(s) | 473, 825, 1325, 2785 |
| BanI | GGYRCC | 2 cut(s) | 470, 1874 |
| BanII | GRGCYC | 1 cut(s) | 1325 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1027, 1059 |
| BbsI | GAAGAC | 3 cut(s) | 24, 1377, 1635 |
| Bbv12I | GWGCWC | 3 cut(s) | 1996, 2752, 2785 |
| BbvI | GCAGC | 8 cut(s) | 284, 619, 1027, 1693, 1738, 1771, 2441, 2989 |
| BciT130I | CCWGG | 3 cut(s) | 397, 828, 1926 |
| BcnI | CCSGG | 1 cut(s) | 2362 |
| BcoDI | GTCTC | 3 cut(s) | 1820, 2509, 2818 |
| BfaI | CTAG | 7 cut(s) | 204, 261, 837, 2198, 2225, 2369, 2817 |
| BfmI | CTRYAG | 1 cut(s) | 1521 |
| BfuAI | ACCTGC | 3 cut(s) | 405, 1390, 1528 |
| BglII | AGATCT | 1 cut(s) | 1392 |
| BisI | GCNGC | 9 cut(s) | 273, 406, 608, 1016, 1682, 1727, 1760, 2430, 3003 |
| BlpI | GCTNAGC | 2 cut(s) | 738, 1722 |
| BlsI | GCNGC | 9 cut(s) | 274, 407, 609, 1017, 1683, 1728, 1761, 2431, 3004 |
| BmcAI | AGTACT | 1 cut(s) | 1036 |
| Bme1390I | CCNGG | 4 cut(s) | 397, 828, 1926, 2362 |
| Bme18I | GGWCC | 7 cut(s) | 417, 1451, 1670, 2025, 2111, 2483, 2861 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2254 |
| BmeT110I | CYCGRG | 1 cut(s) | 2936 |
| BmgBI | CACGTC | 1 cut(s) | 1883 |
| BmrFI | CCNGG | 4 cut(s) | 397, 828, 1926, 2362 |
| BmrI | ACTGGG | 1 cut(s) | 1328 |
| BmuI | ACTGGG | 1 cut(s) | 1328 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1668 |
| BpiI | GAAGAC | 3 cut(s) | 24, 1377, 1635 |
| BpmI | CTGGAG | 2 cut(s) | 1542, 2736 |
| Bpu10I | CCTNAGC | 2 cut(s) | 422, 2878 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 738, 1722 |
| Bpu14I | TTCGAA | 1 cut(s) | 1892 |
| BpuEI | CTTGAG | 4 cut(s) | 935, 1074, 1655, 2978 |
| BpuMI | CCSGG | 1 cut(s) | 2362 |
| Bsa29I | ATCGAT | 2 cut(s) | 1194, 2184 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2670 |
| BsaHI | GRCGYC | 2 cut(s) | 2268, 2561 |
| BsaI | GGTCTC | 1 cut(s) | 2818 |
| BsaJI | CCNNGG | 7 cut(s) | 409, 719, 743, 826, 1925, 2864, 2937 |
| BsaWI | WCCGGW | 5 cut(s) | 139, 153, 376, 988, 2044 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1983, 2013 |
| Bse118I | RCCGGY | 3 cut(s) | 153, 988, 2846 |
| Bse1I | ACTGG | 9 cut(s) | 1233, 1323, 1559, 1997, 2069, 2653, 2745, 2870, 3006 |
| Bse3DI | GCAATG | 1 cut(s) | 2942 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2670 |
| BseAI | TCCGGA | 2 cut(s) | 376, 2044 |
| BseBI | CCWGG | 3 cut(s) | 397, 828, 1926 |
| BseCI | ATCGAT | 2 cut(s) | 1194, 2184 |
| BseDI | CCNNGG | 7 cut(s) | 409, 719, 743, 826, 1925, 2864, 2937 |
| BseJI | GATNNNNATC | 1 cut(s) | 2670 |
| BseMI | GCAATG | 1 cut(s) | 2942 |
| BseMII | CTCAG | 8 cut(s) | 101, 413, 525, 729, 1367, 1563, 1713, 1830 |
| BseNI | ACTGG | 9 cut(s) | 1233, 1323, 1559, 1997, 2069, 2653, 2745, 2870, 3006 |
| BseRI | GAGGAG | 9 cut(s) | 506, 716, 736, 1264, 1545, 2049, 2380, 2580, 2754 |
| BseSI | GKGCMC | 4 cut(s) | 473, 825, 1325, 2785 |
| BseXI | GCAGC | 8 cut(s) | 284, 619, 1027, 1693, 1738, 1771, 2441, 2989 |
| BseYI | CCCAGC | 1 cut(s) | 466 |
| BsgI | GTGCAG | 1 cut(s) | 1269 |
| Bsh1236I | CGCG | 2 cut(s) | 286, 1479 |
| Bsh1285I | CGRYCG | 1 cut(s) | 154 |
| BshFI | GGCC | 9 cut(s) | 199, 408, 1323, 1408, 2016, 2281, 2502, 2846, 2869 |
| BshNI | GGYRCC | 2 cut(s) | 470, 1874 |
| BshTI | ACCGGT | 2 cut(s) | 153, 988 |
| BshVI | ATCGAT | 2 cut(s) | 1194, 2184 |
| BsiEI | CGRYCG | 1 cut(s) | 154 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1996, 2752, 2785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2936 |
| BsiSI | CCGG | 8 cut(s) | 32, 140, 154, 377, 989, 2045, 2361, 2847 |
| BslFI | GGGAC | 2 cut(s) | 403, 1876 |
| BsmAI | GTCTC | 3 cut(s) | 1820, 2509, 2818 |
| BsmFI | GGGAC | 2 cut(s) | 403, 1876 |
| BsnI | GGCC | 9 cut(s) | 199, 408, 1323, 1408, 2016, 2281, 2502, 2846, 2869 |
| Bso31I | GGTCTC | 1 cut(s) | 2818 |
| BsoBI | CYCGRG | 1 cut(s) | 2936 |
| Bsp119I | TTCGAA | 1 cut(s) | 1892 |
| Bsp120I | GGGCCC | 1 cut(s) | 1321 |
| Bsp1286I | GDGCHC | 6 cut(s) | 473, 825, 1325, 1996, 2752, 2785 |
| Bsp13I | TCCGGA | 2 cut(s) | 376, 2044 |
| Bsp1407I | TGTACA | 1 cut(s) | 1581 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 738, 1722 |
| Bsp68I | TCGCGA | 1 cut(s) | 286 |
| BspACI | CCGC | 7 cut(s) | 42, 405, 1245, 1878, 2028, 2285, 2720 |
| BspANI | GGCC | 9 cut(s) | 199, 408, 1323, 1408, 2016, 2281, 2502, 2846, 2869 |
| BspCNI | CTCAG | 8 cut(s) | 102, 414, 526, 730, 1366, 1564, 1714, 1831 |
| BspDI | ATCGAT | 2 cut(s) | 1194, 2184 |
| BspEI | TCCGGA | 2 cut(s) | 376, 2044 |
| BspFNI | CGCG | 2 cut(s) | 286, 1479 |
| BspHI | TCATGA | 4 cut(s) | 55, 1294, 1363, 1968 |
| BspMAI | CTGCAG | 1 cut(s) | 1525 |
| BspMI | ACCTGC | 3 cut(s) | 405, 1390, 1528 |
| BspPI | GGATC | 4 cut(s) | 42, 1916, 2569, 2579 |
| BspT104I | TTCGAA | 1 cut(s) | 1892 |
| BspT107I | GGYRCC | 2 cut(s) | 470, 1874 |
| BspTNI | GGTCTC | 1 cut(s) | 2818 |
| BsrDI | GCAATG | 1 cut(s) | 2942 |
| BsrFI | RCCGGY | 3 cut(s) | 153, 988, 2846 |
| BsrGI | TGTACA | 1 cut(s) | 1581 |
| BsrI | ACTGG | 9 cut(s) | 1233, 1323, 1559, 1997, 2069, 2653, 2745, 2870, 3006 |
| BssAI | RCCGGY | 3 cut(s) | 153, 988, 2846 |
| BssECI | CCNNGG | 7 cut(s) | 409, 719, 743, 826, 1925, 2864, 2937 |
| BssNAI | GTATAC | 1 cut(s) | 87 |
| BssNI | GRCGYC | 2 cut(s) | 2268, 2561 |
| BssT1I | CCWWGG | 1 cut(s) | 409 |
| Bst1107I | GTATAC | 1 cut(s) | 87 |
| Bst2UI | CCWGG | 3 cut(s) | 397, 828, 1926 |
| Bst4CI | ACNGT | 9 cut(s) | 844, 947, 1487, 1667, 1776, 1867, 2138, 2323, 2807 |
| Bst6I | CTCTTC | 5 cut(s) | 555, 571, 1345, 1925, 2298 |
| BstACI | GRCGYC | 2 cut(s) | 2268, 2561 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2695 |
| BstAUI | TGTACA | 1 cut(s) | 1581 |
| BstBI | TTCGAA | 1 cut(s) | 1892 |
| BstC8I | GCNNGC | 7 cut(s) | 42, 1013, 2283, 2793, 2848, 2894, 2904 |
| BstFNI | CGCG | 2 cut(s) | 286, 1479 |
| BstMAI | GTCTC | 3 cut(s) | 1820, 2509, 2818 |
| BstMCI | CGRYCG | 1 cut(s) | 154 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 37, 411, 1163, 1610, 2695, 2728 |
| BstNI | CCWGG | 3 cut(s) | 397, 828, 1926 |
| BstNSI | RCATGY | 2 cut(s) | 1626, 2896 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1668 |
| BstSCI | CCNGG | 4 cut(s) | 395, 826, 1924, 2360 |
| BstSFI | CTRYAG | 1 cut(s) | 1521 |
| BstSLI | GKGCMC | 4 cut(s) | 473, 825, 1325, 2785 |
| BstUI | CGCG | 2 cut(s) | 286, 1479 |
| BstV1I | GCAGC | 8 cut(s) | 284, 619, 1027, 1693, 1738, 1771, 2441, 2989 |
| BstV2I | GAAGAC | 3 cut(s) | 24, 1377, 1635 |
| BstX2I | RGATCY | 1 cut(s) | 1392 |
| BstYI | RGATCY | 1 cut(s) | 1392 |
| BstZ17I | GTATAC | 1 cut(s) | 87 |
| Bsu15I | ATCGAT | 2 cut(s) | 1194, 2184 |
| BsuRI | GGCC | 9 cut(s) | 199, 408, 1323, 1408, 2016, 2281, 2502, 2846, 2869 |
| BsuTUI | ATCGAT | 2 cut(s) | 1194, 2184 |
| BtgZI | GCGATG | 2 cut(s) | 1740, 2883 |
| BtrI | CACGTC | 1 cut(s) | 1883 |
| BtsI | GCAGTG | 3 cut(s) | 334, 733, 1257 |
| BtuMI | TCGCGA | 1 cut(s) | 286 |
| BveI | ACCTGC | 3 cut(s) | 405, 1390, 1528 |
| Cac8I | GCNNGC | 7 cut(s) | 42, 1013, 2283, 2793, 2848, 2894, 2904 |
| CaiI | CAGNNNCTG | 2 cut(s) | 637, 2909 |
| CciI | TCATGA | 4 cut(s) | 55, 1294, 1363, 1968 |
| Cfr10I | RCCGGY | 3 cut(s) | 153, 988, 2846 |
| ClaI | ATCGAT | 2 cut(s) | 1194, 2184 |
| CseI | GACGC | 4 cut(s) | 333, 1948, 2257, 2569 |
| Csp6I | GTAC | 5 cut(s) | 538, 960, 1035, 1582, 1706 |
| CspAI | ACCGGT | 2 cut(s) | 153, 988 |
| CviQI | GTAC | 5 cut(s) | 538, 960, 1035, 1582, 1706 |
| DraI | TTTAAA | 2 cut(s) | 1260, 2337 |
| DraIII | CACNNNGTG | 1 cut(s) | 113 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2254 |
| EaeI | YGGCCR | 2 cut(s) | 2844, 2867 |
| Eam1104I | CTCTTC | 5 cut(s) | 555, 571, 1345, 1925, 2298 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2254 |
| EarI | CTCTTC | 5 cut(s) | 555, 571, 1345, 1925, 2298 |
| EciI | GGCGGA | 1 cut(s) | 2709 |
| Eco130I | CCWWGG | 1 cut(s) | 409 |
| Eco147I | AGGCCT | 1 cut(s) | 2016 |
| Eco24I | GRGCYC | 1 cut(s) | 1325 |
| Eco31I | GGTCTC | 1 cut(s) | 2818 |
| Eco47I | GGWCC | 7 cut(s) | 417, 1451, 1670, 2025, 2111, 2483, 2861 |
| Eco57I | CTGAAG | 2 cut(s) | 659, 2322 |
| Eco88I | CYCGRG | 1 cut(s) | 2936 |
| EcoO109I | RGGNCCY | 2 cut(s) | 417, 1322 |
| EcoRI | GAATTC | 2 cut(s) | 170, 904 |
| EcoRII | CCWGG | 3 cut(s) | 395, 826, 1924 |
| EcoT14I | CCWWGG | 1 cut(s) | 409 |
| EcoT22I | ATGCAT | 2 cut(s) | 1756, 2700 |
| EcoT38I | GRGCYC | 1 cut(s) | 1325 |
| ErhI | CCWWGG | 1 cut(s) | 409 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 301, 333 |
| FaqI | GGGAC | 2 cut(s) | 403, 1876 |
| FauI | CCCGC | 1 cut(s) | 49 |
| FauNDI | CATATG | 2 cut(s) | 1578, 2700 |
| FblI | GTMKAC | 2 cut(s) | 86, 2357 |
| Fnu4HI | GCNGC | 9 cut(s) | 273, 406, 608, 1016, 1682, 1727, 1760, 2430, 3003 |
| FriOI | GRGCYC | 1 cut(s) | 1325 |
| Fsp4HI | GCNGC | 9 cut(s) | 273, 406, 608, 1016, 1682, 1727, 1760, 2430, 3003 |
| FspBI | CTAG | 7 cut(s) | 204, 261, 837, 2198, 2225, 2369, 2817 |
| GluI | GCNGC | 9 cut(s) | 273, 406, 608, 1016, 1682, 1727, 1760, 2430, 3003 |
| GsaI | CCCAGC | 1 cut(s) | 470 |
| GsuI | CTGGAG | 2 cut(s) | 1542, 2736 |
| HaeIII | GGCC | 9 cut(s) | 199, 408, 1323, 1408, 2016, 2281, 2502, 2846, 2869 |
| HapII | CCGG | 8 cut(s) | 32, 140, 154, 377, 989, 2045, 2361, 2847 |
| HgaI | GACGC | 4 cut(s) | 333, 1948, 2257, 2569 |
| Hin1I | GRCGYC | 2 cut(s) | 2268, 2561 |
| HincII | GTYRAC | 2 cut(s) | 1336, 2410 |
| HindII | GTYRAC | 2 cut(s) | 1336, 2410 |
| HindIII | AAGCTT | 3 cut(s) | 1155, 1164, 1235 |
| HpaII | CCGG | 8 cut(s) | 32, 140, 154, 377, 989, 2045, 2361, 2847 |
| HphI | GGTGA | 8 cut(s) | 243, 278, 380, 1219, 1577, 2669, 2759, 2984 |
| Hpy166II | GTNNAC | 9 cut(s) | 87, 540, 1336, 2330, 2358, 2410, 2486, 2627, 2783 |
| Hpy8I | GTNNAC | 9 cut(s) | 87, 540, 1336, 2330, 2358, 2410, 2486, 2627, 2783 |
| HpyCH4III | ACNGT | 9 cut(s) | 844, 947, 1487, 1667, 1776, 1867, 2138, 2323, 2807 |
| HpyCH4IV | ACGT | 1 cut(s) | 1882 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 37, 411, 1163, 1610, 2695, 2728 |
| HpySE526I | ACGT | 1 cut(s) | 1882 |
| Hsp92I | GRCGYC | 2 cut(s) | 2268, 2561 |
| Kpn2I | TCCGGA | 2 cut(s) | 376, 2044 |
| KroI | GCCGGC | 1 cut(s) | 2846 |
| KroNI | GCCGGC | 1 cut(s) | 2848 |
| LmnI | GCTCC | 7 cut(s) | 723, 1277, 1991, 2047, 2625, 2755, 2911 |
| Lsp1109I | GCAGC | 8 cut(s) | 284, 619, 1027, 1693, 1738, 1771, 2441, 2989 |
| MaeI | CTAG | 7 cut(s) | 204, 261, 837, 2198, 2225, 2369, 2817 |
| MaeII | ACGT | 1 cut(s) | 1882 |
| MfeI | CAATTG | 1 cut(s) | 2100 |
| MflI | RGATCY | 1 cut(s) | 1392 |
| MhlI | GDGCHC | 6 cut(s) | 473, 825, 1325, 1996, 2752, 2785 |
| MlyI | GAGTC | 5 cut(s) | 356, 497, 1078, 1562, 1942 |
| MmeI | TCCRAC | 3 cut(s) | 663, 1969, 2089 |
| Mph1103I | ATGCAT | 2 cut(s) | 1756, 2700 |
| MroI | TCCGGA | 2 cut(s) | 376, 2044 |
| MroNI | GCCGGC | 1 cut(s) | 2846 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MseI | TTAA | 7 cut(s) | 63, 510, 1259, 1593, 1796, 2315, 2336 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1026 |
| MspA1I | CMGCKG | 3 cut(s) | 275, 466, 1245 |
| MspI | CCGG | 8 cut(s) | 32, 140, 154, 377, 989, 2045, 2361, 2847 |
| MspR9I | CCNGG | 4 cut(s) | 397, 828, 1926, 2362 |
| MunI | CAATTG | 1 cut(s) | 2100 |
| MvaI | CCWGG | 3 cut(s) | 397, 828, 1926 |
| MvnI | CGCG | 2 cut(s) | 286, 1479 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 37, 411, 1163, 1610, 2695, 2728 |
| NaeI | GCCGGC | 1 cut(s) | 2848 |
| NciI | CCSGG | 1 cut(s) | 2362 |
| NdeI | CATATG | 2 cut(s) | 1578, 2700 |
| NgoMIV | GCCGGC | 1 cut(s) | 2846 |
| NmeAIII | GCCGAG | 4 cut(s) | 381, 724, 744, 2845 |
| NmuCI | GTSAC | 7 cut(s) | 105, 341, 1207, 1565, 1661, 1883, 2138 |
| NruI | TCGCGA | 1 cut(s) | 286 |
| NsiI | ATGCAT | 2 cut(s) | 1756, 2700 |
| NspI | RCATGY | 2 cut(s) | 1626, 2896 |
| NspV | TTCGAA | 1 cut(s) | 1892 |
| PaeI | GCATGC | 1 cut(s) | 2896 |
| PagI | TCATGA | 4 cut(s) | 55, 1294, 1363, 1968 |
| PceI | AGGCCT | 1 cut(s) | 2016 |
| PciI | ACATGT | 1 cut(s) | 1622 |
| PdiI | GCCGGC | 1 cut(s) | 2848 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 8 cut(s) | 52, 122, 373, 1645, 1819, 2228, 2365, 2989 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 206, 892 |
| PinAI | ACCGGT | 2 cut(s) | 153, 988 |
| PkrI | GCNGC | 9 cut(s) | 274, 407, 609, 1017, 1683, 1728, 1761, 2431, 3004 |
| PleI | GAGTC | 5 cut(s) | 356, 497, 1077, 1562, 1941 |
| PpsI | GAGTC | 5 cut(s) | 356, 497, 1077, 1562, 1941 |
| PpuMI | RGGWCCY | 1 cut(s) | 417 |
| PscI | ACATGT | 1 cut(s) | 1622 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1668 |
| PsiI | TTATAA | 1 cut(s) | 1101 |
| Psp5II | RGGWCCY | 1 cut(s) | 417 |
| Psp6I | CCWGG | 3 cut(s) | 395, 826, 1924 |
| PspFI | CCCAGC | 1 cut(s) | 466 |
| PspGI | CCWGG | 3 cut(s) | 395, 826, 1924 |
| PspOMI | GGGCCC | 1 cut(s) | 1321 |
| PspPPI | RGGWCCY | 1 cut(s) | 417 |
| PstI | CTGCAG | 1 cut(s) | 1525 |
| PstNI | CAGNNNCTG | 2 cut(s) | 637, 2909 |
| PsuI | RGATCY | 1 cut(s) | 1392 |
| PvuII | CAGCTG | 2 cut(s) | 275, 466 |
| RruI | TCGCGA | 1 cut(s) | 286 |
| RsaI | GTAC | 5 cut(s) | 539, 961, 1036, 1583, 1707 |
| RsaNI | GTAC | 5 cut(s) | 538, 960, 1035, 1582, 1706 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1026 |
| SaqAI | TTAA | 7 cut(s) | 63, 510, 1259, 1593, 1796, 2315, 2336 |
| SatI | GCNGC | 9 cut(s) | 273, 406, 608, 1016, 1682, 1727, 1760, 2430, 3003 |
| ScaI | AGTACT | 1 cut(s) | 1036 |
| SchI | GAGTC | 5 cut(s) | 356, 497, 1078, 1562, 1942 |
| ScrFI | CCNGG | 4 cut(s) | 397, 828, 1926, 2362 |
| SduI | GDGCHC | 6 cut(s) | 473, 825, 1325, 1996, 2752, 2785 |
| SfcI | CTRYAG | 1 cut(s) | 1521 |
| SfuI | TTCGAA | 1 cut(s) | 1892 |
| SinI | GGWCC | 7 cut(s) | 417, 1451, 1670, 2025, 2111, 2483, 2861 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1026 |
| SmlI | CTYRAG | 4 cut(s) | 914, 1089, 1634, 2957 |
| SmoI | CTYRAG | 4 cut(s) | 914, 1089, 1634, 2957 |
| SphI | GCATGC | 1 cut(s) | 2896 |
| SseBI | AGGCCT | 1 cut(s) | 2016 |
| SsiI | CCGC | 7 cut(s) | 42, 405, 1245, 1878, 2028, 2285, 2720 |
| SspMI | CTAG | 7 cut(s) | 204, 261, 837, 2198, 2225, 2369, 2817 |
| StuI | AGGCCT | 1 cut(s) | 2016 |
| StyD4I | CCNGG | 4 cut(s) | 395, 826, 1924, 2360 |
| StyI | CCWWGG | 1 cut(s) | 409 |
| TaaI | ACNGT | 9 cut(s) | 844, 947, 1487, 1667, 1776, 1867, 2138, 2323, 2807 |
| TaiI | ACGT | 1 cut(s) | 1885 |
| TaqI | TCGA | 8 cut(s) | 150, 174, 973, 1194, 1643, 1892, 2184, 2293 |
| TatI | WGTACW | 3 cut(s) | 537, 1034, 1581 |
| TauI | GCSGC | 1 cut(s) | 408 |
| TfiI | GAWTC | 8 cut(s) | 52, 122, 373, 1645, 1819, 2228, 2365, 2989 |
| Tru1I | TTAA | 7 cut(s) | 63, 510, 1259, 1593, 1796, 2315, 2336 |
| Tru9I | TTAA | 7 cut(s) | 63, 510, 1259, 1593, 1796, 2315, 2336 |
| TseFI | GTSAC | 7 cut(s) | 105, 341, 1207, 1565, 1661, 1883, 2138 |
| TseI | GCWGC | 8 cut(s) | 272, 607, 1015, 1681, 1726, 1759, 2429, 3002 |
| Tsp45I | GTSAC | 7 cut(s) | 105, 341, 1207, 1565, 1661, 1883, 2138 |
| TspGWI | ACGGA | 2 cut(s) | 2612, 2844 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 206, 892 |
| VneI | GTGCAC | 1 cut(s) | 2781 |
| VpaK11BI | GGWCC | 7 cut(s) | 417, 1451, 1670, 2025, 2111, 2483, 2861 |
| XapI | RAATTY | 6 cut(s) | 170, 904, 1075, 1845, 2347, 2551 |
| XceI | RCATGY | 2 cut(s) | 1626, 2896 |
| XmiI | GTMKAC | 2 cut(s) | 86, 2357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |
| XspI | CTAG | 7 cut(s) | 204, 261, 837, 2198, 2225, 2369, 2817 |
| ZrmI | AGTACT | 1 cut(s) | 1036 |
| Zsp2I | ATGCAT | 2 cut(s) | 1756, 2700 |