pycom01g10120

Desiccation protectant protein Lea14 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016919
Physical Location & Seq
Forward (+)
10959250 .. 10960316
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 768 bp
ATGCAAGAAAAGGACCATGGTTGGCCCCATCTCCAAAAGCCAAAAGGTCCTACAAATGTACCAACTCCTATATATATGAATGGGAGTAGAGTAATCGGTCCCATAACTAAATATTTTAAATTCAGTTTTTTGCCCTTCAGCAACAATGCAAAGAAGTGCTTCTTTCGTTTCTTCAAAAATGCAAAGAAGTGCCTCCTTCGTTTCTTCAAAAATGCAAAGAAGTGCCTCTTTCGTTTCTTCAAAAATGCAAAGAAGTGCCTCCTTCGTTTCTTCTTGGTATTTGAACGTGTCACGATTGGCGGGCAGTGCCAAGAACTACGTAGCGAGCAAGGCGCAGGGGTATGTGGAATCGAGATTGTTGGGAACCAAAGCTTGGACTCCACAGAACTCGTCTTCGAGATATCTATCTTCAACCCCTTTGAGTTCTATCTCCCTGTCAGTCAGGCTTCTTTCAAATTCAAAAGCGCCGGCAGCGAGGTCTTAACAGGAACATTGAAAGATGCCGCGTCGCTGAAGCCCGGAGAAGAGTCGATTATGTTTGTGTTAGTGAAGGTGCCATTAAGAGTGTTCATAAACTTCGCAAAGGACATATCTGGGGATGCAGATATTAACTATGAGATCGATTTGAGTGTCAAGATTAAGTTTCCTGTAATTGGGAACGTTGTATCCTTACCAATTCCTTGTCAATGCCAACAGGGCGAACTCAAGCTTTCTCATCTGTTTTCCAAATTGTTGGACCAAATCAATCCTCAGCAGCTGGTGCCTTAA

Protein Analysis

256

Amino Acids

28.85

Weight (kDa)

9.42

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 134 - 230 4.1e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016919)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g15470
malus_domestica MD01G1072000.v1.1
prunus_persica Prupe.2G178300_v2.0.a1
pyrus_communis pycom01g10120
rosa_chinensis RchiOBHm_Chr1g0357781
rosa_laevigata RLG00000027997
rosa_multiflora Rmu_sc0011109.1_g000014
rosa_roxburghii Rroxscaffold_4G00298520
rosa_rugosa Rorug01G0258600
rosa_samantha Rh1AG272500 Rh1BG239700 Rh1CG256400 Rh1DG268000
rosa_wichuraiana Rw1G024320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 553, 760
AccB7I CCANNNNNTGG 1 cut(s) 373
AccII CGCG 1 cut(s) 506
AciI CCGC 2 cut(s) 300, 504
AclI AACGTT 1 cut(s) 660
AcsI RAATTY 2 cut(s) 119, 455
AcuI CTGAAG 2 cut(s) 121, 533
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 373, 653
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 8 cut(s) 175, 208, 241, 284, 412, 454, 460, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AloI GAACNNNNNNTCC 2 cut(s) 650, 682
AluBI AGCT 3 cut(s) 372, 709, 757
AluI AGCT 3 cut(s) 372, 709, 757
AlwNI CAGNNNCTG 1 cut(s) 757
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 471, 754
ApoI RAATTY 2 cut(s) 119, 455
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 335, 467
AspS9I GGNCC 5 cut(s) 13, 24, 47, 98, 736
AsuC2I CCSGG 1 cut(s) 519
AvaII GGWCC 4 cut(s) 13, 47, 98, 736
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BanI GGYRCC 2 cut(s) 553, 760
BbsI GAAGAC 1 cut(s) 385
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 483
BccI CCATC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 676
BcnI CCSGG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 468
BfuI GTATCC 1 cut(s) 676
BglI GCCNNNNNGGC 1 cut(s) 696
BisI GCNGC 3 cut(s) 472, 504, 755
BlsI GCNGC 3 cut(s) 473, 505, 756
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 4 cut(s) 13, 47, 98, 736
BmgT120I GGNCC 5 cut(s) 13, 24, 47, 98, 736
BmiI GGNNCC 5 cut(s) 26, 100, 365, 555, 762
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 490, 589
BpiI GAAGAC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 519
Bsa29I ATCGAT 1 cut(s) 621
BsaAI YACGTR 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 653
Bse118I RCCGGY 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 404
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 2 cut(s) 373, 653
BseMII CTCAG 1 cut(s) 764
BseXI GCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 2 cut(s) 553, 760
BshVI ATCGAT 1 cut(s) 621
BsiSI CCGG 2 cut(s) 468, 519
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 373, 653
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 618
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 2 cut(s) 300, 504
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 763
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 5 cut(s) 26, 100, 365, 555, 762
BspT107I GGYRCC 2 cut(s) 553, 760
BsrFI RCCGGY 1 cut(s) 467
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 302, 326, 469
BstDEI CTNAG 1 cut(s) 750
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 335, 467
BstKTI GATC 1 cut(s) 621
BstMBI GATC 1 cut(s) 618
BstMWI GCNNNNNNNGC 5 cut(s) 306, 330, 471, 696, 760
BstSCI CCNGG 1 cut(s) 517
BstSNI TACGTA 1 cut(s) 320
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 733
Bsu15I ATCGAT 1 cut(s) 621
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 3 cut(s) 302, 326, 469
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 2 cut(s) 335, 467
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 5 cut(s) 13, 24, 47, 98, 736
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 1 cut(s) 495
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 17
CviJI RGCY 7 cut(s) 25, 40, 372, 446, 517, 709, 757
CviKI_1 RGCY 7 cut(s) 25, 40, 372, 446, 517, 709, 757
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 750
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
DraI TTTAAA 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco105I TACGTA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 16
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 4 cut(s) 13, 47, 98, 736
Eco57I CTGAAG 2 cut(s) 121, 533
EcoO109I RGGNCCY 1 cut(s) 47
EcoRV GATATC 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 1 cut(s) 20
FalI AAGNNNNNCTT 6 cut(s) 143, 175, 146, 178, 212, 244
FaqI GGGAC 1 cut(s) 84
FatI CATG 1 cut(s) 16
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 3 cut(s) 472, 504, 755
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 3 cut(s) 472, 504, 755
GlaI GCGC 2 cut(s) 334, 466
GluI GCNGC 3 cut(s) 472, 504, 755
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 468, 519
HgaI GACGC 1 cut(s) 495
HhaI GCGC 2 cut(s) 335, 467
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 2 cut(s) 333, 465
HinP1I GCGC 2 cut(s) 333, 465
HindIII AAGCTT 2 cut(s) 370, 707
HinfI GANTC 3 cut(s) 348, 377, 527
HpaII CCGG 2 cut(s) 468, 519
Hpy188III TCNNGA 4 cut(s) 292, 352, 397, 634
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 4 cut(s) 145, 206, 272, 544
HpyCH4IV ACGT 3 cut(s) 286, 319, 660
HpyCH4V TGCA 6 cut(s) 4, 149, 182, 215, 248, 602
HpyF10VI GCNNNNNNNGC 5 cut(s) 306, 330, 471, 696, 760
HpyF3I CTNAG 1 cut(s) 750
HpySE526I ACGT 3 cut(s) 286, 319, 660
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 2 cut(s) 333, 465
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
Kzo9I GATC 1 cut(s) 618
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 2 cut(s) 490, 589
MaeII ACGT 3 cut(s) 286, 319, 660
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 7 cut(s) 163, 196, 229, 262, 385, 400, 536
MluCI AATT 5 cut(s) 119, 455, 651, 675, 728
MlyI GAGTC 2 cut(s) 371, 536
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 5 cut(s) 203, 236, 269, 469, 759
MroNI GCCGGC 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 6 cut(s) 117, 482, 560, 609, 639, 766
MspA1I CMGCKG 1 cut(s) 757
MspI CCGG 2 cut(s) 468, 519
MspR9I CCNGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 5 cut(s) 306, 330, 471, 696, 760
NaeI GCCGGC 1 cut(s) 469
NciI CCSGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 16
NdeII GATC 1 cut(s) 618
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 5 cut(s) 26, 100, 365, 555, 762
NmuCI GTSAC 1 cut(s) 289
PdiI GCCGGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 3 cut(s) 473, 505, 756
PleI GAGTC 2 cut(s) 371, 535
PpsI GAGTC 2 cut(s) 371, 535
Ppu21I YACGTR 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 47
Psp1406I AACGTT 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 47
PspN4I GGNNCC 5 cut(s) 26, 100, 365, 555, 762
PspPI GGNCC 5 cut(s) 13, 24, 47, 98, 736
PspPPI RGGWCCY 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 757
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 6 cut(s) 117, 482, 560, 609, 639, 766
SatI GCNGC 3 cut(s) 472, 504, 755
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 5 cut(s) 13, 24, 47, 98, 736
SchI GAGTC 2 cut(s) 371, 536
ScrFI CCNGG 1 cut(s) 519
SetI ASST 9 cut(s) 49, 289, 322, 374, 480, 555, 663, 711, 759
SfaNI GCATC 2 cut(s) 490, 589
SinI GGWCC 4 cut(s) 13, 47, 98, 736
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SnaBI TACGTA 1 cut(s) 320
Sse9I AATT 5 cut(s) 119, 455, 651, 675, 728
SsiI CCGC 2 cut(s) 300, 504
SspI AATATT 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 16
TaiI ACGT 3 cut(s) 289, 322, 663
TaqI TCGA 4 cut(s) 351, 396, 530, 621
TaqII GACCGA 1 cut(s) 86
TasI AATT 5 cut(s) 119, 455, 651, 675, 728
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 6 cut(s) 117, 482, 560, 609, 639, 766
Tru9I TTAA 6 cut(s) 117, 482, 560, 609, 639, 766
TscAI CASTG 1 cut(s) 311
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 471, 754
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 92, 559
TspRI CASTG 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 4 cut(s) 13, 47, 98, 736
XapI RAATTY 2 cut(s) 119, 455
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.