Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0017758

Physical Location & Seq

Genomic Coordinates Forward (+)

12239393 .. 12241487

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTGTTACAGCTATGTGAAAAGGCGCGATTTTACCAGGTATATTTACCAATACCATACAATGTTGGCTCATAATTCATTCAGTTTAAGATTACTTACTACAAGGTCTCTTGGCATCTTTGAGGTTTGTGGCATAATTCATACTAGCGGACATCAGTATCTTGCTGCTCTGGATTGCTATATGAAAGGTGTAGAAGAACCCATTCATGCCTTCTCCTTTATCAACAAAACATTATTACAGCTGACTGACAAGGAATGCGCTGCTTTTCAATCAGAAGTAATTTCTCGAATTCCAGAGCTTTTTTACTCAAACAGAGAGAGCACATTCTTCTTGGTTATCGATCATTTTACTATTGAAGAAGGTTCTCATATACTCTCTAAACTTCGTTCCCATCCAAAAAGTCTGTTCCTTTACTTAAAAACAGTGATTGAGGTCCACTTATCTGGCACACTCGACTTTTCAAGTTTAAGAAGAGGTGATCATGTGAGGGATAAGGATCAGTCGAAAGCAGTTGAGGCTTATCTGGAAAGGATCTCTGATTTCCCAAAGCTTTTGCATAGTAATCCTGTTAATGTGACTGATGATATGATTGAACTGTATCTGGAGCTGTTATGTCAGTACGAGCGCAATTCAGTTCTCAAATTCCTAGAGACGTTCGATAGCTATCGCGTGGAACACTGTTTACGCCTGTGCCAGAAATATGGGATAACAGATGCTGCATCTTTCTTGTTGGAAAAGGTTGGTGATGTCAGCAGTGCTCTTTTACTTATACTTTCGACCATCGGTGACAAATTTATCAAGCTTGATACTGCTGTGGCAAGTCTGGTGTCAAGTAATTCCGCTCGTAGTGAGCATTTCAGCAATGCTTTAAAATTGGAGGAGGTGAACGACACGACATTAACAGTATATTGCATGCCTGTATTGGGCTGTGCCAAAGGAACACCCATCTTTTCCACGAGCACGATTATCTGGCTATTATACAGTCATAGGTTTCAGCTATGTAAAGGAGATGTTAAAACGATGGTAGCCGAGTCATTGGAGTCAGAAGAGGATGAGATGGCTTTTATAATCAAGTGGAGAATCTCAAATCTCCATAAAGGTTTCCATATCTTGAGAAAACTGTTCTCTCAGTTCATCAAGGAGATTGTTGAGGGCATGATAGGATGTGTTCGTCTTCCAACTATCATGTCCAAACTCGGTTCTGATAATGGCAGCCAGGAGTTTGGTGATTTTAAATTCACAATATTGGGGATGCTTAGCACGTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

424

Amino Acids

48.35

Weight (kDa)

6.35

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017758)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g11260
rosa_chinensis	RchiOBHm_Chr1g0361181
rosa_roxburghii	Rroxscaffold_4G00295290
rosa_rugosa	Rorug01G0287300
rosa_samantha	Rh1AG298100 Rh1AG298200 Rh1BG262100 Rh1CG279500 Rh1DG292200 Rh1DG292300
rosa_wichuraiana	Rw0G002910 Rw1G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1067
AccBSI	CCGCTC	1 cut(s)	842
AccII	CGCG	2 cut(s)	27, 669
AciI	CCGC	2 cut(s)	147, 840
AclWI	GGATC	2 cut(s)	504, 539
AcsI	RAATTY	4 cut(s)	288, 641, 791, 1235
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	1 cut(s)	923
AgsI	TTSAA	4 cut(s)	269, 356, 462, 593
AjnI	CCWGG	2 cut(s)	35, 1215
AluBI	AGCT	9 cut(s)	12, 241, 298, 550, 607, 663, 802, 997, 1269
AluI	AGCT	9 cut(s)	12, 241, 298, 550, 607, 663, 802, 997, 1269
Alw21I	GWGCWC	3 cut(s)	323, 760, 962
Alw26I	GTCTC	2 cut(s)	111, 644
AlwI	GGATC	2 cut(s)	504, 539
AlwNI	CAGNNNCTG	1 cut(s)	716
ApeKI	GCWGC	4 cut(s)	164, 260, 716, 1212
ApoI	RAATTY	4 cut(s)	288, 641, 791, 1235
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	3 cut(s)	27, 260, 627
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	5 cut(s)	488, 755, 797, 895, 1238
AvaII	GGWCC	1 cut(s)	433
BaeI	ACNNNNGTAYC	4 cut(s)	140, 173, 798, 831
BauI	CACGAG	1 cut(s)	955
BbsI	GAAGAC	1 cut(s)	1166
Bbv12I	GWGCWC	3 cut(s)	323, 760, 962
BbvI	GCAGC	4 cut(s)	151, 247, 703, 1224
BccI	CCATC	5 cut(s)	399, 788, 953, 1015, 1051
BciT130I	CCWGG	2 cut(s)	37, 1217
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	2 cut(s)	111, 644
BfaI	CTAG	3 cut(s)	144, 647, 1270
BisI	GCNGC	4 cut(s)	165, 261, 717, 1213
BlpI	GCTNAGC	1 cut(s)	1256
BlsI	GCNGC	4 cut(s)	166, 262, 718, 1214
Bme1390I	CCNGG	2 cut(s)	37, 1217
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	37, 1217
BmsI	GCATC	4 cut(s)	123, 703, 728, 1242
BpiI	GAAGAC	1 cut(s)	1166
BpmI	CTGGAG	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	1256
BpuEI	CTTGAG	1 cut(s)	1132
Bsa29I	ATCGAT	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	1263
BsaBI	GATNNNNATC	2 cut(s)	495, 663
BsaI	GGTCTC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	923
Bse3DI	GCAATG	1 cut(s)	868
Bse8I	GATNNNNATC	2 cut(s)	495, 663
BseBI	CCWGG	2 cut(s)	37, 1217
BseCI	ATCGAT	1 cut(s)	339
BseGI	GGATG	4 cut(s)	391, 1057, 1169, 1257
BseJI	GATNNNNATC	2 cut(s)	495, 663
BseLI	CCNNNNNNNGG	1 cut(s)	923
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	1 cut(s)	1142
BseRI	GAGGAG	1 cut(s)	893
BseXI	GCAGC	4 cut(s)	151, 247, 703, 1224
Bsh1236I	CGCG	2 cut(s)	27, 669
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	3 cut(s)	323, 760, 962
BslI	CCNNNNNNNGG	1 cut(s)	923
BsmAI	GTCTC	2 cut(s)	111, 644
BsmBI	CGTCTC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	3 cut(s)	323, 760, 962
Bsp143I	GATC	4 cut(s)	340, 478, 496, 531
Bsp1720I	GCTNAGC	1 cut(s)	1256
BspACI	CCGC	2 cut(s)	147, 840
BspCNI	CTCAG	1 cut(s)	1141
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	2 cut(s)	27, 669
BspPI	GGATC	2 cut(s)	504, 539
BspTNI	GGTCTC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	842
BsrDI	GCAATG	1 cut(s)	868
BssMI	GATC	4 cut(s)	340, 478, 496, 531
BssSI	CACGAG	1 cut(s)	955
Bst2BI	CACGAG	1 cut(s)	955
Bst2UI	CCWGG	2 cut(s)	37, 1217
Bst4CI	ACNGT	6 cut(s)	424, 597, 680, 904, 983, 1122
Bst6I	CTCTTC	2 cut(s)	466, 1041
BstBAI	YACGTR	1 cut(s)	1263
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	2 cut(s)	1128, 1256
BstF5I	GGATG	4 cut(s)	391, 1057, 1169, 1257
BstFNI	CGCG	2 cut(s)	27, 669
BstHHI	GCGC	3 cut(s)	27, 260, 627
BstKTI	GATC	4 cut(s)	343, 481, 499, 534
BstMAI	GTCTC	2 cut(s)	111, 644
BstMBI	GATC	4 cut(s)	340, 478, 496, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 1266
BstNI	CCWGG	2 cut(s)	37, 1217
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	2 cut(s)	35, 1215
BstUI	CGCG	2 cut(s)	27, 669
BstV1I	GCAGC	4 cut(s)	151, 247, 703, 1224
BstV2I	GAAGAC	1 cut(s)	1166
BstX2I	RGATCY	1 cut(s)	531
BstXI	CCANNNNNNTGG	3 cut(s)	443, 701, 1223
BstYI	RGATCY	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	339
BtsCI	GGATG	4 cut(s)	391, 1057, 1169, 1257
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	3 cut(s)	429, 676, 760
Cac8I	GCNNGC	1 cut(s)	914
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	3 cut(s)	27, 260, 627
Cfr13I	GGNCC	1 cut(s)	433
ClaI	ATCGAT	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	5 cut(s)	206, 482, 913, 1156, 1186
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	2 cut(s)	1128, 1256
DpnI	GATC	4 cut(s)	342, 480, 498, 533
DpnII	GATC	4 cut(s)	340, 478, 496, 531
DraI	TTTAAA	2 cut(s)	870, 1234
Eam1104I	CTCTTC	2 cut(s)	466, 1041
EarI	CTCTTC	2 cut(s)	466, 1041
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	35, 1215
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	5 cut(s)	209, 485, 916, 1159, 1189
FatI	CATG	5 cut(s)	205, 481, 912, 1155, 1185
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	165, 261, 717, 1213
FokI	GGATG	4 cut(s)	378, 1064, 1176, 1264
Fsp4HI	GCNGC	4 cut(s)	165, 261, 717, 1213
FspBI	CTAG	3 cut(s)	144, 647, 1270
GlaI	GCGC	3 cut(s)	26, 259, 626
GluI	GCNGC	4 cut(s)	165, 261, 717, 1213
GsuI	CTGGAG	1 cut(s)	623
HhaI	GCGC	3 cut(s)	27, 260, 627
Hin1II	CATG	5 cut(s)	209, 485, 916, 1159, 1189
Hin6I	GCGC	3 cut(s)	25, 258, 625
HinP1I	GCGC	3 cut(s)	25, 258, 625
HindIII	AAGCTT	2 cut(s)	548, 800
HinfI	GANTC	3 cut(s)	1031, 1040, 1080
HphI	GGTGA	5 cut(s)	488, 755, 797, 895, 1238
Hpy166II	GTNNAC	3 cut(s)	436, 683, 886
Hpy188I	TCNGA	4 cut(s)	274, 538, 1045, 1204
Hpy188III	TCNNGA	6 cut(s)	170, 285, 293, 524, 602, 1111
Hpy8I	GTNNAC	3 cut(s)	436, 683, 886
HpyAV	CCTTC	2 cut(s)	220, 353
HpyCH4III	ACNGT	6 cut(s)	424, 597, 680, 904, 983, 1122
HpyCH4IV	ACGT	2 cut(s)	653, 1262
HpyCH4V	TGCA	3 cut(s)	556, 719, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 1266
HpyF3I	CTNAG	2 cut(s)	1128, 1256
HpySE526I	ACGT	2 cut(s)	653, 1262
Hsp92II	CATG	5 cut(s)	209, 485, 916, 1159, 1189
HspAI	GCGC	3 cut(s)	25, 258, 625
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	340, 478, 496, 531
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	4 cut(s)	151, 247, 703, 1224
LweI	GCATC	4 cut(s)	123, 703, 728, 1242
MabI	ACCWGGT	1 cut(s)	35
MaeI	CTAG	3 cut(s)	144, 647, 1270
MaeII	ACGT	2 cut(s)	653, 1262
MaeIII	GTNAC	3 cut(s)	5, 574, 785
MalI	GATC	4 cut(s)	342, 480, 498, 533
MbiI	CCGCTC	1 cut(s)	842
MboI	GATC	4 cut(s)	340, 478, 496, 531
MboII	GAAGA	6 cut(s)	206, 319, 368, 483, 1058, 1166
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	3 cut(s)	323, 760, 962
MlyI	GAGTC	2 cut(s)	1040, 1049
MmeI	TCCRAC	2 cut(s)	711, 1202
MnlI	CCTC	9 cut(s)	115, 424, 467, 480, 508, 871, 874, 1042, 1144
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	8 cut(s)	86, 416, 467, 570, 869, 899, 1014, 1233
MspA1I	CMGCKG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	37, 1217
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	37, 1217
MvnI	CGCG	2 cut(s)	27, 669
MwoI	GCNNNNNNNGC	2 cut(s)	515, 1266
NdeII	GATC	4 cut(s)	340, 478, 496, 531
NlaIII	CATG	5 cut(s)	209, 485, 916, 1159, 1189
NmeAIII	GCCGAG	1 cut(s)	1054
NmuCI	GTSAC	2 cut(s)	574, 785
NspI	RCATGY	1 cut(s)	916
PaeI	GCATGC	1 cut(s)	916
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	1080
PkrI	GCNGC	4 cut(s)	166, 262, 718, 1214
PleI	GAGTC	2 cut(s)	1039, 1048
PpsI	GAGTC	2 cut(s)	1039, 1048
Ppu21I	YACGTR	1 cut(s)	1263
PsiI	TTATAA	1 cut(s)	1067
Psp6I	CCWGG	2 cut(s)	35, 1215
PspGI	CCWGG	2 cut(s)	35, 1215
PspPI	GGNCC	1 cut(s)	433
PsrI	GAACNNNNNNTAC	2 cut(s)	666, 698
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	531
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SaqAI	TTAA	8 cut(s)	86, 416, 467, 570, 869, 899, 1014, 1233
SatI	GCNGC	4 cut(s)	165, 261, 717, 1213
Sau3AI	GATC	4 cut(s)	340, 478, 496, 531
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	2 cut(s)	1040, 1049
ScrFI	CCNGG	2 cut(s)	37, 1217
SduI	GDGCHC	3 cut(s)	323, 760, 962
SexAI	ACCWGGT	1 cut(s)	35
SfaNI	GCATC	4 cut(s)	123, 703, 728, 1242
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	1111
SmoI	CTYRAG	1 cut(s)	1111
SphI	GCATGC	1 cut(s)	916
SsiI	CCGC	2 cut(s)	147, 840
SspI	AATATT	1 cut(s)	1245
SspMI	CTAG	3 cut(s)	144, 647, 1270
StyD4I	CCNGG	2 cut(s)	35, 1215
TaaI	ACNGT	6 cut(s)	424, 597, 680, 904, 983, 1122
TaiI	ACGT	2 cut(s)	656, 1265
TaqI	TCGA	6 cut(s)	286, 339, 453, 503, 657, 776
TfiI	GAWTC	1 cut(s)	1080
Tru1I	TTAA	8 cut(s)	86, 416, 467, 570, 869, 899, 1014, 1233
Tru9I	TTAA	8 cut(s)	86, 416, 467, 570, 869, 899, 1014, 1233
TscAI	CASTG	3 cut(s)	429, 683, 760
TseFI	GTSAC	2 cut(s)	574, 785
TseI	GCWGC	4 cut(s)	164, 260, 716, 1212
Tsp45I	GTSAC	2 cut(s)	574, 785
TspDTI	ATGAA	5 cut(s)	66, 128, 194, 197, 1123
TspRI	CASTG	3 cut(s)	429, 683, 760
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	4 cut(s)	288, 641, 791, 1235
XceI	RCATGY	1 cut(s)	916
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	3 cut(s)	144, 647, 1270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.