Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017758

Physical Location & Seq

Genomic Coordinates Forward (+)

53181662 .. 53186262

Gene Structure 4601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTCTCCCTCAAACTATCTTTTCCAAACTCCTCTCTGATCACTGTGGCCAGGAACTTGGTGATATTAAAGTCATTATACTGGAGATGTTTAGCATGTATGGCTTCGAGAAAAAGAAATCTGGATACTACCAAGTCCATTGCATTGAATATGCTGAAAATTGGGCTTCTCATGGTTATGTGCCTCGGAGTCGAGTGCTGTGTATGTGATTGCTTGCTTGACAACAGCTCGTCCAGCTCCATTAGCATTTTCAACAGTGGTCACGCAACACATCTTCAGTGTGAAGTTTCAGAGCATGACACATCAAGTAGTATCTCGTCCTCTGGATGCCCTGTTTGTATTTCTGAGAAGAAATCTCATCGACAGCACCTAAAAGAGTGTTCATCGAGACCACAACATACACGTCAATCAGCTTCTAACCACCATGAAAGCAATGCATCAGAGAATAATGGACTTCAGCAAATATTACGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

158

Amino Acids

17.41

Weight (kDa)

8.69

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017758)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g11260
rosa_chinensis	RchiOBHm_Chr1g0361181
rosa_roxburghii	Rroxscaffold_4G00295290
rosa_rugosa	Rorug01G0287300
rosa_samantha	Rh1AG298100 Rh1AG298200 Rh1BG262100 Rh1CG279500 Rh1DG292200 Rh1DG292300
rosa_wichuraiana	Rw0G002910 Rw1G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	260, 440
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	148, 253
AjiI	CACGTC	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	3 cut(s)	228, 237, 413
AluI	AGCT	3 cut(s)	228, 237, 413
Alw26I	GTCTC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	118
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	317, 446
BpmI	CTGGAG	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	2 cut(s)	138, 439
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	332
BseMI	GCAATG	2 cut(s)	138, 439
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	138, 439
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	46, 257
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 234, 243
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	3 cut(s)	42, 262, 284
Cac8I	GCNNGC	1 cut(s)	215
CviAII	CATG	4 cut(s)	96, 172, 296, 425
CviJI	RGCY	6 cut(s)	50, 104, 166, 228, 237, 413
CviKI_1	RGCY	6 cut(s)	50, 104, 166, 228, 237, 413
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	260, 440
EcoRII	CCWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	439
FaeI	CATG	4 cut(s)	99, 175, 299, 428
FatI	CATG	4 cut(s)	95, 171, 295, 424
FbaI	TGATCA	1 cut(s)	39
FokI	GGATG	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	99, 175, 299, 428
HinfI	GANTC	1 cut(s)	189
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	39, 188, 292, 346, 442
Hpy188III	TCNNGA	4 cut(s)	108, 122, 324, 387
HpyCH4III	ACNGT	2 cut(s)	46, 257
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	143, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 234, 243
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	99, 175, 299, 428
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	7 cut(s)	37, 64, 67, 107, 247, 309, 345
LweI	GCATC	2 cut(s)	317, 446
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	266, 361
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	20, 43, 194, 331
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	101, 234, 243
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	4 cut(s)	99, 175, 299, 428
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	99
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	5 cut(s)	230, 239, 372, 406, 415
SfaNI	GCATC	2 cut(s)	317, 446
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	159
SspI	AATATT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	46, 257
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	4 cut(s)	107, 192, 361, 386
TasI	AATT	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	3 cut(s)	49, 262, 284
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	372, 441
TspRI	CASTG	3 cut(s)	49, 262, 284
XceI	RCATGY	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.