Vacuolar protein sorting-associated protein 8 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g11260 |
| rosa_chinensis | RchiOBHm_Chr1g0361181 |
| rosa_roxburghii | Rroxscaffold_4G00295290 |
| rosa_rugosa | Rorug01G0287300 |
| rosa_samantha | Rh1AG298100 Rh1AG298200 Rh1BG262100 Rh1CG279500 Rh1DG292200 Rh1DG292300 |
| rosa_wichuraiana | Rw0G002910 Rw1G026360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 485 |
| AcuI | CTGAAG | 2 cut(s) | 161, 341 |
| AfaI | GTAC | 1 cut(s) | 98 |
| AflIII | ACRYGT | 1 cut(s) | 488 |
| AgsI | TTSAA | 7 cut(s) | 49, 154, 185, 308, 385, 422, 439 |
| AluBI | AGCT | 5 cut(s) | 129, 138, 314, 442, 455 |
| AluI | AGCT | 5 cut(s) | 129, 138, 314, 442, 455 |
| Alw26I | GTCTC | 1 cut(s) | 283 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 471 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BcoDI | GTCTC | 1 cut(s) | 283 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BglII | AGATCT | 1 cut(s) | 378 |
| BmcAI | AGTACT | 1 cut(s) | 98 |
| BmiI | GGNNCC | 1 cut(s) | 474 |
| BmsI | GCATC | 2 cut(s) | 218, 347 |
| BsaI | GGTCTC | 1 cut(s) | 283 |
| BsaJI | CCNNGG | 2 cut(s) | 85, 403 |
| Bse3DI | GCAATG | 2 cut(s) | 39, 340 |
| BseDI | CCNNGG | 2 cut(s) | 85, 403 |
| BseGI | GGATG | 2 cut(s) | 233, 426 |
| BseMI | GCAATG | 2 cut(s) | 39, 340 |
| BseMII | CTCAG | 1 cut(s) | 446 |
| BsmAI | GTCTC | 1 cut(s) | 283 |
| Bso31I | GGTCTC | 1 cut(s) | 283 |
| Bsp143I | GATC | 2 cut(s) | 378, 445 |
| BspCNI | CTCAG | 1 cut(s) | 445 |
| BspHI | TCATGA | 1 cut(s) | 463 |
| BspLI | GGNNCC | 1 cut(s) | 474 |
| BspQI | GCTCTTC | 1 cut(s) | 136 |
| BspTNI | GGTCTC | 1 cut(s) | 283 |
| BsrDI | GCAATG | 2 cut(s) | 39, 340 |
| BssECI | CCNNGG | 2 cut(s) | 85, 403 |
| BssMI | GATC | 2 cut(s) | 378, 445 |
| BssT1I | CCWWGG | 1 cut(s) | 403 |
| Bst4CI | ACNGT | 3 cut(s) | 101, 158, 372 |
| Bst6I | CTCTTC | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 1 cut(s) | 432 |
| BstF5I | GGATG | 2 cut(s) | 233, 426 |
| BstKTI | GATC | 2 cut(s) | 381, 448 |
| BstMAI | GTCTC | 1 cut(s) | 283 |
| BstMBI | GATC | 2 cut(s) | 378, 445 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 135, 448 |
| BstNSI | RCATGY | 1 cut(s) | 492 |
| BstX2I | RGATCY | 1 cut(s) | 378 |
| BstYI | RGATCY | 1 cut(s) | 378 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BtsCI | GGATG | 2 cut(s) | 233, 426 |
| BtsIMutI | CAGTG | 1 cut(s) | 163 |
| Cac8I | GCNNGC | 1 cut(s) | 453 |
| CciI | TCATGA | 1 cut(s) | 463 |
| Csp6I | GTAC | 1 cut(s) | 97 |
| CviAII | CATG | 5 cut(s) | 73, 197, 326, 464, 489 |
| CviJI | RGCY | 7 cut(s) | 5, 67, 129, 138, 314, 442, 455 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 67, 129, 138, 314, 442, 455 |
| CviQI | GTAC | 1 cut(s) | 97 |
| DdeI | CTNAG | 1 cut(s) | 432 |
| DpnI | GATC | 2 cut(s) | 380, 447 |
| DpnII | GATC | 2 cut(s) | 378, 445 |
| Eam1104I | CTCTTC | 1 cut(s) | 136 |
| EarI | CTCTTC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 1 cut(s) | 403 |
| Eco31I | GGTCTC | 1 cut(s) | 283 |
| Eco57I | CTGAAG | 2 cut(s) | 161, 341 |
| EcoT14I | CCWWGG | 1 cut(s) | 403 |
| EcoT22I | ATGCAT | 1 cut(s) | 340 |
| ErhI | CCWWGG | 1 cut(s) | 403 |
| FaeI | CATG | 5 cut(s) | 76, 200, 329, 467, 492 |
| FatI | CATG | 5 cut(s) | 72, 196, 325, 463, 488 |
| FokI | GGATG | 2 cut(s) | 240, 413 |
| Hin1II | CATG | 5 cut(s) | 76, 200, 329, 467, 492 |
| HindIII | AAGCTT | 1 cut(s) | 440 |
| HinfI | GANTC | 1 cut(s) | 90 |
| Hpy188I | TCNGA | 3 cut(s) | 89, 193, 343 |
| Hpy188III | TCNNGA | 6 cut(s) | 9, 119, 225, 288, 382, 464 |
| HpyCH4III | ACNGT | 3 cut(s) | 101, 158, 372 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 338, 394 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 135, 448 |
| HpyF3I | CTNAG | 1 cut(s) | 432 |
| Hsp92II | CATG | 5 cut(s) | 76, 200, 329, 467, 492 |
| Kzo9I | GATC | 2 cut(s) | 378, 445 |
| LguI | GCTCTTC | 1 cut(s) | 136 |
| LmnI | GCTCC | 1 cut(s) | 143 |
| LpnPI | CCDG | 5 cut(s) | 148, 210, 246, 465, 490 |
| LweI | GCATC | 2 cut(s) | 218, 347 |
| MaeIII | GTNAC | 1 cut(s) | 161 |
| MalI | GATC | 2 cut(s) | 380, 447 |
| MboI | GATC | 2 cut(s) | 378, 445 |
| MboII | GAAGA | 3 cut(s) | 123, 167, 262 |
| MflI | RGATCY | 1 cut(s) | 378 |
| MluCI | AATT | 1 cut(s) | 388 |
| MlyI | GAGTC | 1 cut(s) | 99 |
| MnlI | CCTC | 3 cut(s) | 95, 232, 441 |
| Mph1103I | ATGCAT | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 1 cut(s) | 471 |
| MslI | CAYNNNNRTG | 2 cut(s) | 77, 493 |
| MspA1I | CMGCKG | 1 cut(s) | 455 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 135, 448 |
| NdeII | GATC | 2 cut(s) | 378, 445 |
| NlaIII | CATG | 5 cut(s) | 76, 200, 329, 467, 492 |
| NlaIV | GGNNCC | 1 cut(s) | 474 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| NsiI | ATGCAT | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 492 |
| PagI | TCATGA | 1 cut(s) | 463 |
| PciI | ACATGT | 1 cut(s) | 488 |
| PciSI | GCTCTTC | 1 cut(s) | 136 |
| PdmI | GAANNNNTTC | 1 cut(s) | 471 |
| PleI | GAGTC | 1 cut(s) | 98 |
| PpsI | GAGTC | 1 cut(s) | 98 |
| PscI | ACATGT | 1 cut(s) | 488 |
| PsiI | TTATAA | 1 cut(s) | 485 |
| PspN4I | GGNNCC | 1 cut(s) | 474 |
| PsuI | RGATCY | 1 cut(s) | 378 |
| PvuII | CAGCTG | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 98 |
| RsaNI | GTAC | 1 cut(s) | 97 |
| RseI | CAYNNNNRTG | 2 cut(s) | 77, 493 |
| SapI | GCTCTTC | 1 cut(s) | 136 |
| Sau3AI | GATC | 2 cut(s) | 378, 445 |
| ScaI | AGTACT | 1 cut(s) | 98 |
| SchI | GAGTC | 1 cut(s) | 99 |
| SetI | ASST | 7 cut(s) | 131, 140, 273, 316, 444, 457, 474 |
| SfaNI | GCATC | 2 cut(s) | 218, 347 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 77, 493 |
| Sse9I | AATT | 1 cut(s) | 388 |
| SspI | AATATT | 1 cut(s) | 366 |
| StyI | CCWWGG | 1 cut(s) | 403 |
| TaaI | ACNGT | 3 cut(s) | 101, 158, 372 |
| TaqI | TCGA | 4 cut(s) | 8, 93, 262, 287 |
| TasI | AATT | 1 cut(s) | 388 |
| TatI | WGTACW | 1 cut(s) | 96 |
| TscAI | CASTG | 1 cut(s) | 163 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 3 cut(s) | 273, 342, 480 |
| TspRI | CASTG | 1 cut(s) | 163 |
| XceI | RCATGY | 1 cut(s) | 492 |
| XmnI | GAANNNNTTC | 1 cut(s) | 471 |
| ZrmI | AGTACT | 1 cut(s) | 98 |
| Zsp2I | ATGCAT | 1 cut(s) | 340 |