Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00092

Orthogroup ID

OG0017758

Physical Location & Seq

Genomic Coordinates Reverse (-)

21726 .. 24881

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGGAGTAAAGGATCAAACAAAAGGAGTTGAGGCTTTCTTAGAAAGGGTCTCTAATTTCCCACAGCTTTTGCGTGATAGTCCTATTAATGTGACTGATGATATGATTGAGCTTTATCTGGAGCTGTTATGCCAGTTTGAATGCAAATCAGTTCTCAAATTCCTAGAGACATTTGATAGCTATCGTGTGGAGCACTGTTTACGCCTCTGCCAGAAATATGCAATAATAGATGCTTCATCATTCTTGTTGGAGAGGGTTGGTGATGTTGGAAGTGCACTTTTACTTACACTTTCCACCCTCAATGACAAATTTATCAAGCTTGAAACTGCTGTTGGAAGTCTAAATTTAAGTGGGGCTTCACGTGGTTCTGCTAGTACAGAATGCTTGAGCAATGCTTTGAAAGTGGAGGAGGTGAATGATATAGACAGTATATTGCATGCATGTATAGGATTGTGCCAACGGAACACCCATCGTCTAAATCCTGATGAATCAGAGGCACTCTGGTTCAAATTGCTTGACTCGTTTTGTGAGCCTTTAATGGATTCGTTTAGTGCTGGTACAGTATCTAAAGGAGAAGATCATAATAGAATGGTAACCAATTCATTGGATTCACAAGAGGATGAAATGAATTTCACAATCAAGTGGAGAAATTTCACAATCAAGTGGAGAATCCCAAAGGCTCATAAAGGTGCTGATATTTTAAGAAAATTGTTTTCTCGGTTCATCAAGGAGATTGTTGAGGGCATGATAGGATATGTTCGCCTTCCAACTATCATGTCAAAGCTCCTTTCTGACAATGGTAGCCAGGAATTTGGATACTGCCAAGTCCTGATAGAAGATGATACATTCTATACTATGAGCATCCTCAAGAAAGGAGCCTCACATGGGTATGCTCCTCGCAACCCAAAATGTTGCATATGCGATTGCCTCCTTGACAAGAACTCCTCCAGCTACATTCGCATTTTCAATTGTGGTCATGCAACACATCTTAAATGCGAAGTTTCAGGAATGAAAACATCAAGTAGTAGCTCGTCCTCTGGATGCCCAGTTTGTATGCCCAAGAAGAAATCTCAGAGGTCTAAAAACAAATCGGTTCTAGCAGAGGAGAGTTTAGTGAAGTTTGAGATGTTGACCAATTTGCAGAAACATCGTGGATTAGTCGAGATTGAAAACATGCCTCAATTGAGGCTTGCCCCACCAGCTGTGTACCATGAAAAGGTTAAGCACGGACCTGTTCTGTCACCAGGAGAGAGCAGCAGTGATCTTGTGAGAACAGAGAAACAAAGTGAAAATCAAGCAAACTCAGGGAGGCAAGGACAAGATCAGCAGGCGGCTGATACTATTGCCATCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

452

Amino Acids

50.56

Weight (kDa)

6.44

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_Vps41	PF23556	34 - 102	2e-07	Vps41 TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017758)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g11260
rosa_chinensis	RchiOBHm_Chr1g0361181
rosa_roxburghii	Rroxscaffold_4G00295290
rosa_rugosa	Rorug01G0287300
rosa_samantha	Rh1AG298100 Rh1AG298200 Rh1BG262100 Rh1CG279500 Rh1DG292200 Rh1DG292300
rosa_wichuraiana	Rw0G002910 Rw1G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1331
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	6 cut(s)	158, 308, 343, 628, 649, 809
AcvI	CACGTG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	376, 559, 1208
AfiI	CCNNNNNNNGG	2 cut(s)	885, 1216
AgsI	TTSAA	6 cut(s)	140, 323, 400, 508, 967, 1169
AjnI	CCWGG	2 cut(s)	804, 1243
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	9 cut(s)	67, 112, 124, 180, 319, 784, 951, 1029, 1202
AluI	AGCT	9 cut(s)	67, 112, 124, 180, 319, 784, 951, 1029, 1202
Alw21I	GWGCWC	2 cut(s)	195, 277
Alw26I	GTCTC	2 cut(s)	55, 161
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	1254
ApoI	RAATTY	6 cut(s)	158, 308, 343, 628, 649, 809
AseI	ATTAAT	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	1229
AsuHPI	GGTGA	3 cut(s)	272, 424, 1233
AvaII	GGWCC	1 cut(s)	1229
BaeGI	GKGCMC	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	362
Bbv12I	GWGCWC	2 cut(s)	195, 277
BbvI	GCAGC	1 cut(s)	1266
BccI	CCATC	2 cut(s)	477, 1355
BcgI	CGANNNNNNTGC	2 cut(s)	1130, 1164
BciT130I	CCWGG	2 cut(s)	806, 1245
BciVI	GTATCC	1 cut(s)	809
BcoDI	GTCTC	2 cut(s)	55, 161
BfaI	CTAG	3 cut(s)	164, 372, 1097
BfuI	GTATCC	1 cut(s)	809
BisI	GCNGC	2 cut(s)	1255, 1332
BlsI	GCNGC	2 cut(s)	1256, 1333
Bme1390I	CCNGG	2 cut(s)	806, 1245
Bme18I	GGWCC	1 cut(s)	1229
BmgT120I	GGNCC	1 cut(s)	1229
BmiI	GGNNCC	1 cut(s)	877
BmrFI	CCNGG	2 cut(s)	806, 1245
BmrI	ACTGGG	1 cut(s)	1040
BmsI	GCATC	3 cut(s)	220, 870, 1031
BmuI	ACTGGG	1 cut(s)	1040
BpmI	CTGGAG	2 cut(s)	140, 931
BpuEI	CTTGAG	2 cut(s)	406, 851
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	926, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	885, 1216
Bse1I	ACTGG	2 cut(s)	133, 1046
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	806, 1245
BseGI	GGATG	3 cut(s)	625, 861, 1046
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	885, 1216
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	1085, 1317
BseNI	ACTGG	2 cut(s)	133, 1046
BseRI	GAGGAG	4 cut(s)	422, 885, 934, 1118
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	1266
BsiHKAI	GWGCWC	2 cut(s)	195, 277
BslI	CCNNNNNNNGG	2 cut(s)	885, 1216
BsmAI	GTCTC	2 cut(s)	55, 161
BsmI	GAATGC	2 cut(s)	146, 386
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	195, 277
Bsp143I	GATC	4 cut(s)	13, 577, 1261, 1321
BspACI	CCGC	1 cut(s)	1331
BspCNI	CTCAG	2 cut(s)	1084, 1316
BspLI	GGNNCC	1 cut(s)	877
BspPI	GGATC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	133, 1046
BssMI	GATC	4 cut(s)	13, 577, 1261, 1321
Bst2UI	CCWGG	2 cut(s)	806, 1245
Bst4CI	ACNGT	3 cut(s)	197, 428, 562
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	438, 1191, 1329
BstDEI	CTNAG	3 cut(s)	40, 1071, 1303
BstEII	GGTNACC	1 cut(s)	592
BstF5I	GGATG	3 cut(s)	625, 861, 1046
BstKTI	GATC	4 cut(s)	16, 580, 1264, 1324
BstMAI	GTCTC	2 cut(s)	55, 161
BstMBI	GATC	4 cut(s)	13, 577, 1261, 1321
BstMWI	GCNNNNNNNGC	2 cut(s)	957, 1199
BstNI	CCWGG	2 cut(s)	806, 1245
BstNSI	RCATGY	3 cut(s)	440, 444, 1177
BstPI	GGTNACC	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	804, 1243
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	1266
BstXI	CCANNNNNNTGG	2 cut(s)	604, 812
BsuI	GTATCC	1 cut(s)	809
BtsCI	GGATG	3 cut(s)	625, 861, 1046
BtsI	GCAGTG	1 cut(s)	1264
BtsIMutI	CAGTG	2 cut(s)	193, 1264
Cac8I	GCNNGC	3 cut(s)	438, 1191, 1329
Cfr13I	GGNCC	1 cut(s)	1229
Csp6I	GTAC	3 cut(s)	375, 558, 1207
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	8 cut(s)	437, 441, 745, 775, 884, 977, 1174, 1211
CviQI	GTAC	3 cut(s)	375, 558, 1207
DdeI	CTNAG	3 cut(s)	40, 1071, 1303
DpnI	GATC	4 cut(s)	15, 579, 1263, 1323
DpnII	GATC	4 cut(s)	13, 577, 1261, 1321
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	1229
Eco72I	CACGTG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	804, 1243
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	8 cut(s)	440, 444, 748, 778, 887, 980, 1177, 1214
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	8 cut(s)	436, 440, 744, 774, 883, 976, 1173, 1210
FauNDI	CATATG	1 cut(s)	917
Fnu4HI	GCNGC	2 cut(s)	1255, 1332
FokI	GGATG	3 cut(s)	632, 848, 1053
Fsp4HI	GCNGC	2 cut(s)	1255, 1332
FspBI	CTAG	3 cut(s)	164, 372, 1097
GluI	GCNGC	2 cut(s)	1255, 1332
GsuI	CTGGAG	2 cut(s)	140, 931
Hin1II	CATG	8 cut(s)	440, 444, 748, 778, 887, 980, 1177, 1214
HincII	GTYRAC	1 cut(s)	1131
HindII	GTYRAC	1 cut(s)	1131
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	5 cut(s)	488, 518, 542, 608, 669
HphI	GGTGA	3 cut(s)	272, 424, 1233
Hpy166II	GTNNAC	4 cut(s)	200, 275, 1131, 1207
Hpy188I	TCNGA	3 cut(s)	493, 793, 1074
Hpy188III	TCNNGA	7 cut(s)	119, 482, 829, 868, 1005, 1038, 1162
Hpy8I	GTNNAC	4 cut(s)	200, 275, 1131, 1207
HpyAV	CCTTC	1 cut(s)	773
HpyCH4III	ACNGT	3 cut(s)	197, 428, 562
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	8 cut(s)	144, 221, 275, 436, 440, 915, 980, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	957, 1199
HpyF3I	CTNAG	3 cut(s)	40, 1071, 1303
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	8 cut(s)	440, 444, 748, 778, 887, 980, 1177, 1214
Kzo9I	GATC	4 cut(s)	13, 577, 1261, 1321
LmnI	GCTCC	5 cut(s)	121, 190, 789, 875, 898
Lsp1109I	GCAGC	1 cut(s)	1266
LweI	GCATC	3 cut(s)	220, 870, 1031
MaeI	CTAG	3 cut(s)	164, 372, 1097
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	3 cut(s)	91, 592, 1239
MalI	GATC	4 cut(s)	15, 579, 1263, 1323
MboI	GATC	4 cut(s)	13, 577, 1261, 1321
MboII	GAAGA	3 cut(s)	587, 848, 1075
MfeI	CAATTG	2 cut(s)	967, 1181
MhlI	GDGCHC	2 cut(s)	195, 277
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	4 cut(s)	228, 247, 313, 791
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	6 cut(s)	87, 347, 536, 701, 990, 1221
MslI	CAYNNNNRTG	2 cut(s)	687, 888
MspA1I	CMGCKG	1 cut(s)	1202
MspR9I	CCNGG	2 cut(s)	806, 1245
MunI	CAATTG	2 cut(s)	967, 1181
Mva1269I	GAATGC	2 cut(s)	146, 386
MvaI	CCWGG	2 cut(s)	806, 1245
MwoI	GCNNNNNNNGC	2 cut(s)	957, 1199
NdeI	CATATG	1 cut(s)	917
NdeII	GATC	4 cut(s)	13, 577, 1261, 1321
NlaIII	CATG	8 cut(s)	440, 444, 748, 778, 887, 980, 1177, 1214
NlaIV	GGNNCC	1 cut(s)	877
NmuCI	GTSAC	2 cut(s)	91, 1239
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	3 cut(s)	440, 444, 1177
PaeI	GCATGC	1 cut(s)	440
PctI	GAATGC	2 cut(s)	146, 386
PfeI	GAWTC	4 cut(s)	488, 542, 608, 669
PkrI	GCNGC	2 cut(s)	1256, 1333
PleI	GAGTC	1 cut(s)	512
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	512
Ppu21I	YACGTR	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	804, 1243
PspCI	CACGTG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	592
PspGI	CCWGG	2 cut(s)	804, 1243
PspN4I	GGNNCC	1 cut(s)	877
PspPI	GGNCC	1 cut(s)	1229
PvuII	CAGCTG	1 cut(s)	1202
RsaI	GTAC	3 cut(s)	376, 559, 1208
RsaNI	GTAC	3 cut(s)	375, 558, 1207
RseI	CAYNNNNRTG	2 cut(s)	687, 888
SaqAI	TTAA	6 cut(s)	87, 347, 536, 701, 990, 1221
SatI	GCNGC	2 cut(s)	1255, 1332
Sau3AI	GATC	4 cut(s)	13, 577, 1261, 1321
Sau96I	GGNCC	1 cut(s)	1229
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	806, 1245
SduI	GDGCHC	2 cut(s)	195, 277
SfaNI	GCATC	3 cut(s)	220, 870, 1031
SinI	GGWCC	1 cut(s)	1229
SmiMI	CAYNNNNRTG	2 cut(s)	687, 888
SmlI	CTYRAG	2 cut(s)	385, 866
SmoI	CTYRAG	2 cut(s)	385, 866
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	1 cut(s)	1331
SspMI	CTAG	3 cut(s)	164, 372, 1097
StyD4I	CCNGG	2 cut(s)	804, 1243
TaaI	ACNGT	3 cut(s)	197, 428, 562
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	1161
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	1 cut(s)	1334
TfiI	GAWTC	4 cut(s)	488, 542, 608, 669
Tru1I	TTAA	6 cut(s)	87, 347, 536, 701, 990, 1221
Tru9I	TTAA	6 cut(s)	87, 347, 536, 701, 990, 1221
TscAI	CASTG	2 cut(s)	200, 1264
TseFI	GTSAC	2 cut(s)	91, 1239
TseI	GCWGC	1 cut(s)	1254
Tsp45I	GTSAC	2 cut(s)	91, 1239
TspDTI	ATGAA	8 cut(s)	225, 501, 591, 636, 641, 712, 1025, 1227
TspGWI	ACGGA	2 cut(s)	475, 1242
TspRI	CASTG	2 cut(s)	200, 1264
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	1229
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	6 cut(s)	158, 308, 343, 628, 649, 809
XceI	RCATGY	3 cut(s)	440, 444, 1177
XspI	CTAG	3 cut(s)	164, 372, 1097
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.