pycom01g13410

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012886
Physical Location & Seq
Forward (+)
13880519 .. 13882955
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13410.2

Sequence Viewer

Length: 1104 bp
ATGGGGAGCAAATGGAGGAAAGCAAAGCTTGCACTGGGGCTGAATCTGTGTGTGTATCTTCCCAAAACACTAGAGGATTCATCTCCCTCCTCTGTGGACTCGGCTGAGAGACTGTCTGATGCAGCCTTGCTTTCACCTGCCAATTGGGCCAATGGCTCCTCCAGGCCCACCACTCCAACCCCATCCTCTCATGGTTTGAAGCTCTCCAGAAGTGGAAGCAAATCCTCAAAGCAAACGTGTTCGATATGCTTAACCAAGATGAAACAAGGAGGTGGCCATGCTCTTTTCACTGCGGAATGCTCACATTCTTTTCATTTTCATTGCATCACATCGAACGTGAAACATGGCAATCAAATTTGCCCAGTTTGTAGGGCCAAGTGGAAAGAAATCCCAGTACAGGGTCCTAGTCTGGATCCTCCTCCTGGAAGGGCAGCTATTGGTCCGGTTGGTTGGCCCCAAAATGATGCTTTGATGACTGTGGTTCGCCGACTACCTCCTCCTCGAAGAGACTTGAGCCGACGGCACATCGTGCCACTGTATCAGGCACACGAGCCGGGTGTATTTAATGATGATGAAACCTTAGATCACCAACCTGTGTTTGATGAGAGAAGCTCTTGCAATAAAAATGGTGGAGACGACAATTTTGTTAGGACGGTAGAGATCAAAACATTCCCAGAGGTGACAGCTGTTTCAAAATCCAATTCTCACGACAATTTTACTGTTTTGGTGCATCTGAAAGCTGCTACTTCAGTTACAAGGCAAAATCCTAGCATAAATCTTTCCAGTTTGCCTCAGTTTTCACACAATCATCGTGCTCCAGTAGACCTAGTCACAGTGCTCGACACCAGTGGTAGCATGGCAGGAACCAAGCTTGCATTACTAAAACGGGCTATGGGGTTCGTAATACAGAATCTTGGCTCCAACGACAGACTCTCAGTTATTGCATTCTCTTCAACAGCACGTCGCCTCTTTCCCCTCCGCCGAATGACTGACACTGGACGGCAGCAGGCACTGCAAGCTGTTAACTCTCTGGTTGCAAATGGTGGGACCAACATTGCTGAGGGCTTAAGAAAAGGTGGCAAGGTATTGGAAGATCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

368

Amino Acids

39.85

Weight (kDa)

9.83

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38970
fragaria_vesca FvH4_7g19190 FvH4_7g19190
malus_domestica MD01G1107300.v1.1 MD07G1173100.v1.1
pyrus_communis pycom01g13410 pycom07g16770
rosa_chinensis RchiOBHm_Chr1g0363051
rosa_laevigata RLG00000027598
rosa_multiflora Rmu_sc0004472.1_g000004
rosa_roxburghii Rroxscaffold_4G00293520
rosa_rugosa Rorug01G0304000 Rorug01G0304000
rosa_samantha Rh1AG313000 Rh1BG276200 Rh1CG293000 Rh1DG306900
rosa_wichuraiana Rw1G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 822
AciI CCGC 2 cut(s) 293, 979
AclWI GGATC 2 cut(s) 407, 420
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 3 cut(s) 397, 398, 422
AflII CTTAAG 1 cut(s) 1066
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 3 cut(s) 199, 693, 954
AjiI CACGTC 1 cut(s) 962
AjnI CCWGG 2 cut(s) 161, 421
AluBI AGCT 8 cut(s) 28, 202, 434, 612, 686, 740, 871, 1019
AluI AGCT 8 cut(s) 28, 202, 434, 612, 686, 740, 871, 1019
Alw21I GWGCWC 2 cut(s) 817, 840
Alw26I GTCTC 3 cut(s) 103, 501, 627
AlwI GGATC 2 cut(s) 407, 420
AlwNI CAGNNNCTG 1 cut(s) 1012
AoxI GGCC 5 cut(s) 147, 164, 274, 372, 452
ApeKI GCWGC 4 cut(s) 122, 431, 740, 1003
ApoI RAATTY 1 cut(s) 354
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspS9I GGNCC 7 cut(s) 147, 165, 372, 401, 440, 453, 1047
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 126, 578, 691
AvaII GGWCC 3 cut(s) 401, 440, 1047
BalI TGGCCA 1 cut(s) 276
BamHI GGATCC 1 cut(s) 412
BauI CACGAG 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 817, 840
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 4 cut(s) 134, 443, 727, 1015
BccI CCATC 1 cut(s) 190
BceAI ACGGC 2 cut(s) 536, 1016
BciT130I CCWGG 2 cut(s) 163, 423
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 103, 501, 627
BfaI CTAG 4 cut(s) 71, 405, 768, 827
BfrI CTTAAG 1 cut(s) 1066
BfuAI ACCTGC 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 4 cut(s) 123, 432, 741, 1004
BlsI GCNGC 4 cut(s) 124, 433, 742, 1005
Bme1390I CCNGG 3 cut(s) 163, 423, 555
Bme18I GGWCC 3 cut(s) 401, 440, 1047
BmgBI CACGTC 1 cut(s) 962
BmgT120I GGNCC 7 cut(s) 147, 165, 372, 401, 440, 453, 1047
BmiI GGNNCC 7 cut(s) 157, 402, 414, 455, 865, 919, 1048
BmrFI CCNGG 3 cut(s) 163, 423, 555
BmrI ACTGGG 3 cut(s) 44, 356, 386
BmsI GCATC 4 cut(s) 109, 333, 454, 739
BmuI ACTGGG 3 cut(s) 44, 356, 386
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpmI CTGGAG 3 cut(s) 145, 190, 801
Bpu10I CCTNAGC 1 cut(s) 1059
BpuEI CTTGAG 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 555
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 398, 422
Bse1I ACTGG 7 cut(s) 39, 362, 392, 783, 818, 846, 1000
Bse3DI GCAATG 2 cut(s) 319, 1053
BseBI CCWGG 2 cut(s) 163, 423
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 397, 398, 422
BseMI GCAATG 2 cut(s) 319, 1053
BseMII CTCAG 4 cut(s) 96, 806, 948, 1050
BseNI ACTGG 7 cut(s) 39, 362, 392, 783, 818, 846, 1000
BseRI GAGGAG 5 cut(s) 79, 148, 408, 486, 489
BseXI GCAGC 4 cut(s) 134, 443, 727, 1015
BshFI GGCC 5 cut(s) 149, 166, 276, 374, 454
BsiHKAI GWGCWC 2 cut(s) 817, 840
BsiSI CCGG 2 cut(s) 443, 554
BslFI GGGAC 1 cut(s) 1060
BslI CCNNNNNNNGG 3 cut(s) 397, 398, 422
BsmAI GTCTC 3 cut(s) 103, 501, 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 1 cut(s) 1060
BsmI GAATGC 2 cut(s) 302, 944
BsnI GGCC 5 cut(s) 149, 166, 276, 374, 454
Bsp1286I GDGCHC 2 cut(s) 817, 840
Bsp143I GATC 4 cut(s) 412, 583, 660, 1093
BspACI CCGC 2 cut(s) 293, 979
BspANI GGCC 5 cut(s) 149, 166, 276, 374, 454
BspCNI CTCAG 4 cut(s) 97, 805, 947, 1051
BspLI GGNNCC 7 cut(s) 157, 402, 414, 455, 865, 919, 1048
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 407, 420
BspTI CTTAAG 1 cut(s) 1066
BsrDI GCAATG 2 cut(s) 319, 1053
BsrI ACTGG 7 cut(s) 39, 362, 392, 783, 818, 846, 1000
BssMI GATC 4 cut(s) 412, 583, 660, 1093
BssSI CACGAG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 548
Bst2UI CCWGG 2 cut(s) 163, 423
Bst4CI ACNGT 6 cut(s) 114, 478, 537, 655, 721, 835
Bst6I CTCTTC 2 cut(s) 499, 955
BstAFI CTTAAG 1 cut(s) 1066
BstAPI GCANNNNNTGC 3 cut(s) 29, 529, 1012
BstC8I GCNNGC 4 cut(s) 30, 873, 1008, 1017
BstDEI CTNAG 5 cut(s) 105, 580, 792, 934, 1059
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 4 cut(s) 415, 586, 663, 1096
BstMAI GTCTC 3 cut(s) 103, 501, 627
BstMBI GATC 4 cut(s) 412, 583, 660, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 29, 146, 529, 1012, 1016
BstNI CCWGG 2 cut(s) 163, 423
BstSCI CCNGG 3 cut(s) 161, 421, 553
BstV1I GCAGC 4 cut(s) 134, 443, 727, 1015
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 5 cut(s) 149, 166, 276, 374, 454
BtrI CACGTC 1 cut(s) 962
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 2 cut(s) 288, 1010
BtsIMutI CAGTG 7 cut(s) 32, 288, 533, 840, 853, 993, 1010
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 30, 873, 1008, 1017
CaiI CAGNNNCTG 1 cut(s) 1012
Cfr13I GGNCC 7 cut(s) 147, 165, 372, 401, 440, 453, 1047
Csp6I GTAC 1 cut(s) 395
CviAII CATG 4 cut(s) 191, 278, 344, 856
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 5 cut(s) 105, 580, 792, 934, 1059
DpnI GATC 4 cut(s) 414, 585, 662, 1095
DpnII GATC 4 cut(s) 412, 583, 660, 1093
DraIII CACNNNGTG 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 499, 955
EarI CTCTTC 2 cut(s) 499, 955
EciI GGCGGA 1 cut(s) 968
Eco47I GGWCC 3 cut(s) 401, 440, 1047
Eco57I CTGAAG 1 cut(s) 732
EcoO109I RGGNCCY 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 161, 421
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 4 cut(s) 194, 281, 347, 859
FaiI YATR 7 cut(s) 192, 247, 279, 345, 773, 857, 893
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 1060
FatI CATG 4 cut(s) 190, 277, 343, 855
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 4 cut(s) 123, 432, 741, 1004
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 4 cut(s) 123, 432, 741, 1004
FspBI CTAG 4 cut(s) 71, 405, 768, 827
GluI GCNGC 4 cut(s) 123, 432, 741, 1004
GsuI CTGGAG 3 cut(s) 145, 190, 801
HaeIII GGCC 5 cut(s) 149, 166, 276, 374, 454
HapII CCGG 2 cut(s) 443, 554
Hin1II CATG 4 cut(s) 194, 281, 347, 859
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 2 cut(s) 26, 869
HinfI GANTC 5 cut(s) 43, 77, 98, 910, 930
HpaI GTTAAC 1 cut(s) 1024
HpaII CCGG 2 cut(s) 443, 554
HphI GGTGA 3 cut(s) 126, 578, 691
Hpy166II GTNNAC 3 cut(s) 97, 823, 1024
Hpy188I TCNGA 2 cut(s) 118, 735
Hpy188III TCNNGA 3 cut(s) 207, 410, 707
Hpy8I GTNNAC 3 cut(s) 97, 823, 1024
Hpy99I CGWCG 2 cut(s) 522, 966
HpyAV CCTTC 2 cut(s) 420, 1092
HpyCH4III ACNGT 6 cut(s) 114, 478, 537, 655, 721, 835
HpyCH4IV ACGT 3 cut(s) 236, 336, 961
HpyCH4V TGCA 9 cut(s) 32, 122, 324, 618, 730, 875, 944, 1015, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 146, 529, 1012, 1016
HpyF3I CTNAG 5 cut(s) 105, 580, 792, 934, 1059
HpySE526I ACGT 3 cut(s) 236, 336, 961
Hsp92II CATG 4 cut(s) 194, 281, 347, 859
KspAI GTTAAC 1 cut(s) 1024
Kzo9I GATC 4 cut(s) 412, 583, 660, 1093
LmnI GCTCC 4 cut(s) 6, 161, 820, 923
Lsp1109I GCAGC 4 cut(s) 134, 443, 727, 1015
LweI GCATC 4 cut(s) 109, 333, 454, 739
MaeI CTAG 4 cut(s) 71, 405, 768, 827
MaeII ACGT 3 cut(s) 236, 336, 961
MaeIII GTNAC 3 cut(s) 679, 751, 829
MalI GATC 4 cut(s) 414, 585, 662, 1095
MboI GATC 4 cut(s) 412, 583, 660, 1093
MboII GAAGA 4 cut(s) 50, 516, 942, 1103
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 817, 840
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 5 cut(s) 142, 354, 640, 700, 712
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 2 cut(s) 92, 924
MmeI TCCRAC 2 cut(s) 200, 945
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MseI TTAA 4 cut(s) 251, 564, 1023, 1067
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 1066
MspI CCGG 2 cut(s) 443, 554
MspR9I CCNGG 3 cut(s) 163, 423, 555
MunI CAATTG 1 cut(s) 142
Mva1269I GAATGC 2 cut(s) 302, 944
MvaI CCWGG 2 cut(s) 163, 423
MwoI GCNNNNNNNGC 5 cut(s) 29, 146, 529, 1012, 1016
NciI CCSGG 1 cut(s) 555
NdeII GATC 4 cut(s) 412, 583, 660, 1093
NlaIII CATG 4 cut(s) 194, 281, 347, 859
NlaIV GGNNCC 7 cut(s) 157, 402, 414, 455, 865, 919, 1048
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 679, 829
PaqCI CACCTGC 1 cut(s) 145
PctI GAATGC 2 cut(s) 302, 944
PfeI GAWTC 3 cut(s) 43, 77, 910
PflFI GACNNNGTC 1 cut(s) 827
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 4 cut(s) 124, 433, 742, 1005
PleI GAGTC 2 cut(s) 92, 924
PpsI GAGTC 2 cut(s) 92, 924
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 161, 421
PspGI CCWGG 2 cut(s) 161, 421
PspN4I GGNNCC 7 cut(s) 157, 402, 414, 455, 865, 919, 1048
PspPI GGNCC 7 cut(s) 147, 165, 372, 401, 440, 453, 1047
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 412
PsyI GACNNNGTC 1 cut(s) 827
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SaqAI TTAA 4 cut(s) 251, 564, 1023, 1067
SatI GCNGC 4 cut(s) 123, 432, 741, 1004
Sau3AI GATC 4 cut(s) 412, 583, 660, 1093
Sau96I GGNCC 7 cut(s) 147, 165, 372, 401, 440, 453, 1047
SchI GAGTC 2 cut(s) 92, 924
ScrFI CCNGG 3 cut(s) 163, 423, 555
SduI GDGCHC 2 cut(s) 817, 840
SfaNI GCATC 4 cut(s) 109, 333, 454, 739
SinI GGWCC 3 cut(s) 401, 440, 1047
SmlI CTYRAG 2 cut(s) 511, 1066
SmoI CTYRAG 2 cut(s) 511, 1066
Sse9I AATT 5 cut(s) 142, 354, 640, 700, 712
SsiI CCGC 2 cut(s) 293, 979
SspMI CTAG 4 cut(s) 71, 405, 768, 827
StyD4I CCNGG 3 cut(s) 161, 421, 553
TaaI ACNGT 6 cut(s) 114, 478, 537, 655, 721, 835
TaiI ACGT 3 cut(s) 239, 339, 964
TaqI TCGA 5 cut(s) 242, 332, 502, 840, 1096
TasI AATT 5 cut(s) 142, 354, 640, 700, 712
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 3 cut(s) 43, 77, 910
Tru1I TTAA 4 cut(s) 251, 564, 1023, 1067
Tru9I TTAA 4 cut(s) 251, 564, 1023, 1067
TscAI CASTG 7 cut(s) 39, 295, 540, 840, 853, 1000, 1017
TseFI GTSAC 2 cut(s) 679, 829
TseI GCWGC 4 cut(s) 122, 431, 740, 1003
Tsp45I GTSAC 2 cut(s) 679, 829
TspDTI ATGAA 5 cut(s) 69, 275, 302, 308, 588
TspRI CASTG 7 cut(s) 39, 295, 540, 840, 853, 1000, 1017
Tth111I GACNNNGTC 1 cut(s) 827
Vha464I CTTAAG 1 cut(s) 1066
VpaK11BI GGWCC 3 cut(s) 401, 440, 1047
XapI RAATTY 1 cut(s) 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 4 cut(s) 71, 405, 768, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.