Rorug01G0304000

Cytochrome c oxidase assembly protein COX16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012886
Physical Location & Seq
Reverse (-)
41946910 .. 41956198
9289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0304000.1

Sequence Viewer

Length: 2955 bp
ATGGCAGCAAATGTGGTAAGGATTGGAGAACTTAAGCAAAAGGATTGTGATCTCAAACCAGAGGGTAAAACATTGTTGGGGTTACCAGCGATGCACACCGATAATTGTAGTACTAATATGGAGGAGAAGGATTTGAGTAAACGTGTAACCTCCTCATCTGGATACGAGTGCAGAAGTCCTTGTTCCATAACTAGCATTGCCCCTGATGCTCAAGAGTTAAAATTGAAATATCTAAGGAATCCAAACTCAGCTGATTATAGTCAGGTAGGAATTGGGTTTAGAAGTAAGGATTCACATGGTGATTCTGTGTCAGAAGATAATGATCAGATGTTGTTGAGAGTTAGACGCGAGCTTAGAGAAATCCATTCTGGCATCAGGAGTCCGAAGCCTTCTTCAAGCAATTCCTCTGAGCAAGACCCTGATAAAATGTCAGCATATGTAAGGGCTAGGAACAGCAAGATCATCTCAAGCAATATGCTAAGTATTGCCAAAAACCATCTGAAGATCCAATCTCTTGTGAAGGAAACAGTTAAGGGTAAGGGTATCAGTGAAATCCCAGTTATGGACCAGAAGGTATCTTGCGATACAAGGATGAAATCACTTAACCAAAATGGTCAGCATTCTTCACTTGTCCTTGATAGGTCTGGTCCTGAATCTATCAGTACTGGGATCTGCTTGAGGGAGTGGCTTGAACCCGGGCGTCACAAAGTAGATATAGCTGAAAGACTGCTCATATTTAGGCAGATTGTGGAGTTGGTGGATTATGCACACTATCAAGGTGTTGCCTTGCAAGAGTTGCGACCATCACGCTTCATTTTATTGCCATCAAATGTTATTAAATATACAGGTGCATCAGCCATCAGACAATCAGACAGTATTGTGAACCGAGATTTGAGTAAGAAGAGGCTGTTAGAGCAAGGGGCCTGTGCTGGACGTAATTTAGGTGGAAAACAGCGAAAACTGAGTGAGGAGATGATATCTGTTAAATACCAGCCTCAGTACACCTCTAGTTGTGGCTCTGGGACTAAAGTACGTAATGAGAAGGAATTCTGCATAGATCCACAAGATTCTGGGTATGGTGAACTCCAGTTCCAAAATGCAGTACTATTACCCAAACAACAAACCATTTCTGCAACTATTCATTTGGAAGAGACGTGGTATACGAGCCCAGAGGATCTTGGTGAGATAGGTTGCACACTGTCATCAAATATCTATGGCCTTGGCATTCTTCTTTTTGAGTTGTTGTGCTGCTGTGAATCGTGGGAGGTGCATTCTGCAGTGATGTCAGATTTGCACCATCGAATCCTACCACCAAATTTTCTTTCACGAAGTCCAAAGGAAGCTGGCTTTTGCTTTTGGCTTCTCCATCCTGAACCTTTGTCTCGTCCAACAACTAGAGAAATCTTGCAGTCTGAACTCATAGGTGGACACAAAGAAGTGTATCATTGTGATGATTTCTCAAATTTTGATGATGATCTTGTTGCAGAATCAGAGTTACGTAGTTTTCTCCTCTCATTAAAAGACAGGAAGCATGGGCGTGCCTCTAAGTTAATCGAAGATATAAGATGCTTAGAAGAAGATATAAACAAGTTTACGACAAGGCACTTATCAAGGGAATCCTTAGATTATTTCAGGGCACAGAATGAGCTTTCCGGTGAAAGAGAACATGGATTCTGTCTGGAAGAGCCTGTACGCTCAGGTGTTTGTTCTAGATTATTCTCAGCATCAGACATGGATGAGACACAAATGATGAAAAGTATCAGTCAGCTAGACAATGCCTACTTCTCCGCAAGATCCCAAATGCTGGTTATGGAAACGGCTTCTGCAGCAGGTTCTAATAAGGATATGTTAAACAAGCTAGATAGTCATGTGCGAAATTGTACTCAAGATTTAAGCATCAATAAGAAATCAGGTGATCCCCTTGGGGCCTTTTTTGATGGTCTGACCAAGTTTGCTTGCCACAAAAAGTTTAAAGAATGTGGGACACTAAGGAATGCAGATCTTCTCAACTCTTCCAGTGCAATCTGCTCTTTAAGTTTCGACCGTGATGAGGACTATATTGCTACAGCCGGAGTATCAAAGAAAATCAAAATCTTTGATTTTGGTGCCCTTGTAGACAACTCTTTAGATATCCATTATCCTTCAGTTGAGATGTCAAACAATTCTAAGCTGAGCTCTGTTTGCTGGAACAACTACTTTAAGAGCTATCTGGCATCATCAGATTATGATGGAGTGGTACAGATATGGGATGCAAACACGGGTCAAAGAGTTTGTCAACATAAAGAGCATGAAAGGAGGGCTTGGTCTGTCGACTTTTCTCAAGCTGACCCAACAAAGTTTGCTAGTGGAAGTGATGACTTTTCTGTGAGACTGTGGGATGTTAAAGAGGAAAATTCAATAAACACTATCTGGAACCCTGCTAATGTCTGTTATGTTCAGTTCTCCGCGTACTCTTCTCATCTCTTGATTCTTGGATGTGCTGATTACAAGATCTACGGCTATGATCTTCGGCATACTAGAATGCCTTGGTGCACTTTACGTGGTCATGAAAAAGCTGTTAGCTATGTCAGATTTGTAGATAAAGAAACTCTTGTTTCCGCTTCCACGGACAACACTCTGAAGCTTTGGGATCTTAACAAATCTAGTTCAACTGGGTTGTCTTCCAATGCCTGCAGCTTAACTTTTAGCGGTCATACTAATGAGAAGAATTTTGTAGGTTTATCTGTTTTTGATGGATACATAGCATGCGGTTCAGAAACTAATGAGGTTTATAGTTATCACAGAAGTCTACCCATTCCAATCACTTCTCACAAATTTGGATCTATTGATCCTGTCCCTAGAAGTGAGATTGGTGATAGTGGACCGTATGTCTCAAGTGTCTGTTGGCAAAGAAAGTCTAACACACTTGTTGCTGCCAACTCAAGTGGAACTATGAAATTATTACAGATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
COX16

Protein Analysis

984

Amino Acids

110.2

Weight (kDa)

6.36

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 667 - 803 1.6e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 671 - 927 1.2e-29 WDR5 beta-propeller domain
WD40_Gbeta PF25391 672 - 813 7.5e-06 G protein beta WD-40 repeat protein
Beta-prop_RIG_2nd PF23775 672 - 755 1e-05 RIG second beta-propeller
Beta-prop_WDR3_1st PF25173 672 - 775 5.1e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 675 - 797 2.1e-07 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 721 - 821 3.3e-10 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 722 - 839 2.3e-14 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 723 - 835 1.4e-11 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 736 - 883 5e-12 WDHD1 first WD40 domain
WDR55 PF24796 736 - 889 3.2e-11 WDR55
WD40_Prp19 PF24814 737 - 833 5.1e-09 Prp19 WD40 domain
EIF3I PF24805 737 - 823 1.6e-09 EIF3I
Beta-prop_WDR36-Utp21_1st PF25171 739 - 876 1.3e-10 WDR36/Utp21 first beta-propeller
Beta-prop_EML PF23409 739 - 881 4.8e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz PF24807 758 - 883 4.1e-13 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 768 - 882 3.2e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 770 - 890 2.1e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 778 - 926 5.9e-16 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 781 - 897 2e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_EIPR1 PF23609 799 - 876 1.4e-06 EIPR1 beta-propeller
WD40_Prp19 PF24814 807 - 919 3e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 844 - 982 4.3e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38970
fragaria_vesca FvH4_7g19190 FvH4_7g19190
malus_domestica MD01G1107300.v1.1 MD07G1173100.v1.1
pyrus_communis pycom01g13410 pycom07g16770
rosa_chinensis RchiOBHm_Chr1g0363051
rosa_laevigata RLG00000027598
rosa_multiflora Rmu_sc0004472.1_g000004
rosa_roxburghii Rroxscaffold_4G00293520
rosa_rugosa Rorug01G0304000 Rorug01G0304000
rosa_samantha Rh1AG313000 Rh1BG276200 Rh1CG293000 Rh1DG306900
rosa_wichuraiana Rw1G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1820
AccB1I GGYRCC 1 cut(s) 2105
AccB7I CCANNNNNTGG 1 cut(s) 1804
AccI GTMKAC 4 cut(s) 1160, 2115, 2310, 2788
AccII CGCG 2 cut(s) 348, 2447
AciI CCGC 5 cut(s) 1788, 2445, 2598, 2688, 2748
AclWI GGATC 9 cut(s) 499, 677, 1052, 1182, 1788, 1910, 2637, 2822, 2827
AcsI RAATTY 6 cut(s) 1046, 1315, 1462, 2392, 2707, 2813
AcuI CTGAAG 3 cut(s) 521, 2127, 2639
AcyI GRCGYC 1 cut(s) 700
AdeI CACNNNGTG 1 cut(s) 299
AfaI GTAC 9 cut(s) 112, 664, 1001, 1032, 1104, 1692, 1882, 2238, 2450
AfiI CCNNNNNNNGG 3 cut(s) 562, 1804, 2050
AflII CTTAAG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 5 cut(s) 226, 396, 692, 2397, 2649
AhdI GACNNNNNGTC 1 cut(s) 2867
AjiI CACGTC 1 cut(s) 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 1306, 1338
AloI GAACNNNNNNTCC 2 cut(s) 1074, 1106
Alw21I GWGCWC 2 cut(s) 2177, 2534
Alw26I GTCTC 5 cut(s) 1145, 1386, 1733, 2362, 2875
Alw44I GTGCAC 1 cut(s) 2530
AlwI GGATC 9 cut(s) 499, 677, 1052, 1182, 1788, 1910, 2637, 2822, 2827
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 3 cut(s) 921, 1216, 1926
ApaLI GTGCAC 1 cut(s) 2530
ApeKI GCWGC 5 cut(s) 5, 1248, 1826, 2673, 2912
ApoI RAATTY 6 cut(s) 1046, 1315, 1462, 2392, 2707, 2813
ArsI GACNNNNNNTTYG 2 cut(s) 2257, 2289
Asp700I GAANNNNTTC 1 cut(s) 1046
AspS9I GGNCC 5 cut(s) 565, 647, 921, 1926, 2861
AsuC2I CCSGG 2 cut(s) 696, 697
AsuHPI GGTGA 6 cut(s) 311, 1091, 1193, 1667, 1925, 2864
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 3 cut(s) 565, 647, 2861
BaeGI GKGCMC 3 cut(s) 1639, 2110, 2534
BanI GGYRCC 1 cut(s) 2105
BanII GRGCYC 2 cut(s) 1169, 2177
BarI GAAGNNNNNNTAC 2 cut(s) 1674, 1706
BbsI GAAGAC 1 cut(s) 2652
Bbv12I GWGCWC 2 cut(s) 2177, 2534
BbvI GCAGC 5 cut(s) 17, 1235, 1838, 2685, 2899
BccI CCATC 9 cut(s) 504, 811, 832, 866, 1305, 1374, 1931, 2222, 2726
BceAI ACGGC 2 cut(s) 1833, 2512
BciVI GTATCC 2 cut(s) 155, 2729
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 2 cut(s) 696, 697
BcoDI GTCTC 5 cut(s) 1145, 1386, 1733, 2362, 2875
BfmI CTRYAG 4 cut(s) 1275, 1824, 2064, 2671
BfrI CTTAAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 1820
BfuI GTATCC 2 cut(s) 155, 2729
BglII AGATCT 2 cut(s) 1999, 2490
BisI GCNGC 5 cut(s) 6, 1249, 1827, 2674, 2913
BlpI GCTNAGC 1 cut(s) 2171
BlsI GCNGC 5 cut(s) 7, 1250, 1828, 2675, 2914
BmcAI AGTACT 3 cut(s) 112, 664, 1104
Bme1390I CCNGG 2 cut(s) 696, 697
Bme18I GGWCC 3 cut(s) 565, 647, 2861
BmeRI GACNNNNNGTC 1 cut(s) 2867
BmeT110I CYCGRG 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 1155
BmgT120I GGNCC 5 cut(s) 565, 647, 921, 1926, 2861
BmiI GGNNCC 4 cut(s) 922, 1927, 2107, 2414
BmrFI CCNGG 2 cut(s) 696, 697
BmrI ACTGGG 3 cut(s) 551, 675, 2661
BmsI GCATC 9 cut(s) 81, 196, 381, 860, 1556, 1733, 1905, 2222, 2239
BmuI ACTGGG 3 cut(s) 551, 675, 2661
BpiI GAAGAC 1 cut(s) 2652
BpmI CTGGAG 1 cut(s) 1070
Bpu10I CCTNAGC 1 cut(s) 1696
Bpu1102I GCTNAGC 1 cut(s) 2171
BpuEI CTTGAG 7 cut(s) 195, 451, 697, 1869, 2304, 2857, 2905
BpuMI CCSGG 2 cut(s) 696, 697
BsaAI YACGTR 3 cut(s) 1034, 1499, 2540
BsaBI GATNNNNATC 3 cut(s) 48, 321, 1473
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 5 cut(s) 695, 1219, 1921, 2525, 2604
BsaWI WCCGGW 1 cut(s) 1652
Bsc4I CCNNNNNNNGG 3 cut(s) 562, 1804, 2050
Bse1I ACTGG 5 cut(s) 557, 670, 1087, 2016, 2656
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 3 cut(s) 48, 321, 1473
BseDI CCNNGG 5 cut(s) 695, 1219, 1921, 2525, 2604
BseGI GGATG 6 cut(s) 597, 1366, 1741, 2254, 2383, 2480
BseJI GATNNNNATC 3 cut(s) 48, 321, 1473
BseLI CCNNNNNNNGG 3 cut(s) 562, 1804, 2050
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 7 cut(s) 261, 399, 953, 1010, 1710, 1734, 2162
BseNI ACTGG 5 cut(s) 557, 670, 1087, 2016, 2656
BseRI GAGGAG 4 cut(s) 137, 142, 983, 1499
BseSI GKGCMC 3 cut(s) 1639, 2110, 2534
BseXI GCAGC 5 cut(s) 17, 1235, 1838, 2685, 2899
BsgI GTGCAG 1 cut(s) 190
Bsh1236I CGCG 2 cut(s) 348, 2447
Bsh1285I CGRYCG 1 cut(s) 2044
BshFI GGCC 3 cut(s) 923, 1218, 1928
BshNI GGYRCC 1 cut(s) 2105
BsiEI CGRYCG 1 cut(s) 2044
BsiHKAI GWGCWC 2 cut(s) 2177, 2534
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 3 cut(s) 696, 1653, 2070
BslFI GGGAC 3 cut(s) 1036, 1996, 2819
BslI CCNNNNNNNGG 3 cut(s) 562, 1804, 2050
BsmAI GTCTC 5 cut(s) 1145, 1386, 1733, 2362, 2875
BsmBI CGTCTC 1 cut(s) 1145
BsmFI GGGAC 3 cut(s) 1036, 1996, 2819
BsmI GAATGC 5 cut(s) 619, 1224, 1270, 1999, 2526
BsnI GGCC 3 cut(s) 923, 1218, 1928
BsoBI CYCGRG 1 cut(s) 695
Bsp1286I GDGCHC 5 cut(s) 1169, 1639, 2110, 2177, 2534
Bsp1720I GCTNAGC 1 cut(s) 2171
BspACI CCGC 5 cut(s) 1788, 2445, 2598, 2688, 2748
BspANI GGCC 3 cut(s) 923, 1218, 1928
BspCNI CTCAG 7 cut(s) 260, 400, 954, 1009, 1709, 1733, 2163
BspFNI CGCG 2 cut(s) 348, 2447
BspHI TCATGA 1 cut(s) 2545
BspLI GGNNCC 4 cut(s) 922, 1927, 2107, 2414
BspMAI CTGCAG 3 cut(s) 1279, 1828, 2675
BspMI ACCTGC 1 cut(s) 1820
BspPI GGATC 9 cut(s) 499, 677, 1052, 1182, 1788, 1910, 2637, 2822, 2827
BspQI GCTCTTC 1 cut(s) 1677
BspT107I GGYRCC 1 cut(s) 2105
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 5 cut(s) 557, 670, 1087, 2016, 2656
BssECI CCNNGG 5 cut(s) 695, 1219, 1921, 2525, 2604
BssNAI GTATAC 1 cut(s) 1161
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 3 cut(s) 1219, 1921, 2525
Bst1107I GTATAC 1 cut(s) 1161
Bst4CI ACNGT 6 cut(s) 529, 875, 1200, 2045, 2373, 2865
Bst6I CTCTTC 5 cut(s) 896, 1143, 1677, 2017, 2458
BstACI GRCGYC 1 cut(s) 700
BstAFI CTTAAG 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 796
BstBAI YACGTR 3 cut(s) 1034, 1499, 2540
BstC8I GCNNGC 6 cut(s) 350, 1345, 1539, 1957, 2671, 2746
BstDSI CCRYGG 1 cut(s) 2604
BstEII GGTNACC 1 cut(s) 81
BstF5I GGATG 6 cut(s) 597, 1366, 1741, 2254, 2383, 2480
BstFNI CGCG 2 cut(s) 348, 2447
BstMAI GTCTC 5 cut(s) 1145, 1386, 1733, 2362, 2875
BstMCI CGRYCG 1 cut(s) 2044
BstMWI GCNNNNNNNGC 5 cut(s) 206, 796, 913, 1826, 2181
BstNSI RCATGY 1 cut(s) 2748
BstPI GGTNACC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 694, 695
BstSFI CTRYAG 4 cut(s) 1275, 1824, 2064, 2671
BstSLI GKGCMC 3 cut(s) 1639, 2110, 2534
BstSNI TACGTA 2 cut(s) 1034, 1499
BstUI CGCG 2 cut(s) 348, 2447
BstV1I GCAGC 5 cut(s) 17, 1235, 1838, 2685, 2899
BstV2I GAAGAC 1 cut(s) 2652
BstX2I RGATCY 9 cut(s) 504, 669, 1057, 1174, 1793, 1999, 2490, 2629, 2819
BstYI RGATCY 9 cut(s) 504, 669, 1057, 1174, 1793, 1999, 2490, 2629, 2819
BstZ17I GTATAC 1 cut(s) 1161
BsuI GTATCC 2 cut(s) 155, 2729
BsuRI GGCC 3 cut(s) 923, 1218, 1928
BtgI CCRYGG 1 cut(s) 2604
BtgZI GCGATG 1 cut(s) 104
BtrI CACGTC 1 cut(s) 1155
BtsCI GGATG 6 cut(s) 597, 1366, 1741, 2254, 2383, 2480
BtsI GCAGTG 1 cut(s) 1284
BtsIMutI CAGTG 4 cut(s) 553, 1196, 1284, 2023
BveI ACCTGC 1 cut(s) 1820
Cac8I GCNNGC 6 cut(s) 350, 1345, 1539, 1957, 2671, 2746
CciI TCATGA 1 cut(s) 2545
Cfr13I GGNCC 5 cut(s) 565, 647, 921, 1926, 2861
Cfr9I CCCGGG 1 cut(s) 695
CseI GACGC 2 cut(s) 354, 689
Csp6I GTAC 9 cut(s) 111, 663, 1000, 1031, 1103, 1691, 1881, 2237, 2449
CspCI CAANNNNNGTGG 2 cut(s) 2905, 2940
CviAII CATG 8 cut(s) 296, 1532, 1667, 1732, 1868, 2288, 2546, 2745
CviQI GTAC 9 cut(s) 111, 663, 1000, 1031, 1103, 1691, 1881, 2237, 2449
DraI TTTAAA 1 cut(s) 1972
DraIII CACNNNGTG 1 cut(s) 299
DriI GACNNNNNGTC 1 cut(s) 2867
Eam1104I CTCTTC 5 cut(s) 896, 1143, 1677, 2017, 2458
Eam1105I GACNNNNNGTC 1 cut(s) 2867
EarI CTCTTC 5 cut(s) 896, 1143, 1677, 2017, 2458
Ecl136II GAGCTC 1 cut(s) 2175
Eco105I TACGTA 2 cut(s) 1034, 1499
Eco130I CCWWGG 3 cut(s) 1219, 1921, 2525
Eco24I GRGCYC 2 cut(s) 1169, 2177
Eco32I GATATC 2 cut(s) 978, 2131
Eco47I GGWCC 3 cut(s) 565, 647, 2861
Eco53kI GAGCTC 1 cut(s) 2175
Eco57I CTGAAG 3 cut(s) 521, 2127, 2639
Eco88I CYCGRG 1 cut(s) 695
Eco91I GGTNACC 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 2175
EcoO109I RGGNCCY 2 cut(s) 921, 1926
EcoO65I GGTNACC 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 1046
EcoRV GATATC 2 cut(s) 978, 2131
EcoT14I CCWWGG 3 cut(s) 1219, 1921, 2525
EcoT38I GRGCYC 2 cut(s) 1169, 2177
ErhI CCWWGG 3 cut(s) 1219, 1921, 2525
Esp3I CGTCTC 1 cut(s) 1145
FaeI CATG 8 cut(s) 299, 1535, 1670, 1735, 1871, 2291, 2549, 2748
FalI AAGNNNNNCTT 4 cut(s) 2284, 2316, 2574, 2606
FaqI GGGAC 3 cut(s) 1036, 1996, 2819
FatI CATG 8 cut(s) 295, 1531, 1666, 1731, 1867, 2287, 2545, 2744
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 4 cut(s) 1160, 2115, 2310, 2788
Fnu4HI GCNGC 5 cut(s) 6, 1249, 1827, 2674, 2913
FokI GGATG 6 cut(s) 604, 1353, 1748, 2261, 2390, 2487
FriOI GRGCYC 2 cut(s) 1169, 2177
Fsp4HI GCNGC 5 cut(s) 6, 1249, 1827, 2674, 2913
GluI GCNGC 5 cut(s) 6, 1249, 1827, 2674, 2913
GsuI CTGGAG 1 cut(s) 1070
HaeIII GGCC 3 cut(s) 923, 1218, 1928
HapII CCGG 3 cut(s) 696, 1653, 2070
HgaI GACGC 2 cut(s) 354, 689
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 8 cut(s) 299, 1535, 1670, 1735, 1871, 2291, 2549, 2748
HincII GTYRAC 2 cut(s) 2276, 2311
HindII GTYRAC 2 cut(s) 2276, 2311
HindIII AAGCTT 1 cut(s) 2621
HpaII CCGG 3 cut(s) 696, 1653, 2070
HphI GGTGA 6 cut(s) 311, 1091, 1193, 1667, 1925, 2864
HpyAV CCTTC 6 cut(s) 121, 399, 514, 565, 1036, 2151
HpyCH4III ACNGT 6 cut(s) 529, 875, 1200, 2045, 2373, 2865
HpyCH4IV ACGT 6 cut(s) 142, 934, 1033, 1154, 1498, 2539
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 796, 913, 1826, 2181
HpySE526I ACGT 6 cut(s) 142, 934, 1033, 1154, 1498, 2539
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 8 cut(s) 299, 1535, 1670, 1735, 1871, 2291, 2549, 2748
Ksp22I TGATCA 1 cut(s) 322
LguI GCTCTTC 1 cut(s) 1677
Lsp1109I GCAGC 5 cut(s) 17, 1235, 1838, 2685, 2899
LweI GCATC 9 cut(s) 81, 196, 381, 860, 1556, 1733, 1905, 2222, 2239
MaeII ACGT 6 cut(s) 142, 934, 1033, 1154, 1498, 2539
MaeIII GTNAC 4 cut(s) 81, 145, 701, 1494
MflI RGATCY 9 cut(s) 504, 669, 1057, 1174, 1793, 1999, 2490, 2629, 2819
MhlI GDGCHC 5 cut(s) 1169, 1639, 2110, 2177, 2534
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 1412
MroXI GAANNNNTTC 1 cut(s) 1046
MslI CAYNNNNRTG 3 cut(s) 1449, 1536, 2697
MspA1I CMGCKG 1 cut(s) 251
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 3 cut(s) 696, 1653, 2070
MspR9I CCNGG 2 cut(s) 696, 697
Mva1269I GAATGC 5 cut(s) 619, 1224, 1270, 1999, 2526
MvnI CGCG 2 cut(s) 348, 2447
MwoI GCNNNNNNNGC 5 cut(s) 206, 796, 913, 1826, 2181
NciI CCSGG 2 cut(s) 696, 697
NdeI CATATG 1 cut(s) 436
NlaIII CATG 8 cut(s) 299, 1535, 1670, 1735, 1871, 2291, 2549, 2748
NlaIV GGNNCC 4 cut(s) 922, 1927, 2107, 2414
NmuCI GTSAC 1 cut(s) 701
NspI RCATGY 1 cut(s) 2748
PaeI GCATGC 1 cut(s) 2748
PagI TCATGA 1 cut(s) 2545
PciSI GCTCTTC 1 cut(s) 1677
PcsI WCGNNNNNNNCGW 1 cut(s) 1160
PctI GAATGC 5 cut(s) 619, 1224, 1270, 1999, 2526
PdmI GAANNNNTTC 1 cut(s) 1046
PflMI CCANNNNNTGG 1 cut(s) 1804
PkrI GCNGC 5 cut(s) 7, 1250, 1828, 2675, 2914
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Ppu21I YACGTR 3 cut(s) 1034, 1499, 2540
Psp124BI GAGCTC 1 cut(s) 2177
PspEI GGTNACC 1 cut(s) 81
PspN4I GGNNCC 4 cut(s) 922, 1927, 2107, 2414
PspPI GGNCC 5 cut(s) 565, 647, 921, 1926, 2861
PstI CTGCAG 3 cut(s) 1279, 1828, 2675
PsuI RGATCY 9 cut(s) 504, 669, 1057, 1174, 1793, 1999, 2490, 2629, 2819
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 9 cut(s) 112, 664, 1001, 1032, 1104, 1692, 1882, 2238, 2450
RsaNI GTAC 9 cut(s) 111, 663, 1000, 1031, 1103, 1691, 1881, 2237, 2449
RseI CAYNNNNRTG 3 cut(s) 1449, 1536, 2697
SacI GAGCTC 1 cut(s) 2177
SalI GTCGAC 1 cut(s) 2309
SapI GCTCTTC 1 cut(s) 1677
SatI GCNGC 5 cut(s) 6, 1249, 1827, 2674, 2913
Sau96I GGNCC 5 cut(s) 565, 647, 921, 1926, 2861
ScaI AGTACT 3 cut(s) 112, 664, 1104
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 2 cut(s) 696, 697
SduI GDGCHC 5 cut(s) 1169, 1639, 2110, 2177, 2534
SfaNI GCATC 9 cut(s) 81, 196, 381, 860, 1556, 1733, 1905, 2222, 2239
SfcI CTRYAG 4 cut(s) 1275, 1824, 2064, 2671
SinI GGWCC 3 cut(s) 565, 647, 2861
SmaI CCCGGG 1 cut(s) 697
SmiMI CAYNNNNRTG 3 cut(s) 1449, 1536, 2697
SmlI CTYRAG 8 cut(s) 32, 210, 466, 676, 1884, 2319, 2872, 2920
SmoI CTYRAG 8 cut(s) 32, 210, 466, 676, 1884, 2319, 2872, 2920
SnaBI TACGTA 2 cut(s) 1034, 1499
SphI GCATGC 1 cut(s) 2748
SsiI CCGC 5 cut(s) 1788, 2445, 2598, 2688, 2748
SstI GAGCTC 1 cut(s) 2177
StyD4I CCNGG 2 cut(s) 694, 695
StyI CCWWGG 3 cut(s) 1219, 1921, 2525
TaaI ACNGT 6 cut(s) 529, 875, 1200, 2045, 2373, 2865
TaiI ACGT 6 cut(s) 145, 937, 1036, 1157, 1501, 2542
TaqI TCGA 4 cut(s) 1300, 1554, 2040, 2310
TatI WGTACW 5 cut(s) 110, 662, 999, 1102, 1880
TscAI CASTG 4 cut(s) 553, 1203, 1284, 2023
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 5 cut(s) 5, 1248, 1826, 2673, 2912
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 7 cut(s) 608, 802, 1130, 1766, 2304, 2562, 2948
TspGWI ACGGA 1 cut(s) 2621
TspMI CCCGGG 1 cut(s) 695
TspRI CASTG 4 cut(s) 553, 1203, 1284, 2023
Van91I CCANNNNNTGG 1 cut(s) 1804
Vha464I CTTAAG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 2530
VpaK11BI GGWCC 3 cut(s) 565, 647, 2861
XapI RAATTY 6 cut(s) 1046, 1315, 1462, 2392, 2707, 2813
XbaI TCTAGA 1 cut(s) 1709
XceI RCATGY 1 cut(s) 2748
XmaI CCCGGG 1 cut(s) 695
XmiI GTMKAC 4 cut(s) 1160, 2115, 2310, 2788
XmnI GAANNNNTTC 1 cut(s) 1046
ZrmI AGTACT 3 cut(s) 112, 664, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.