pycom01g14830

psbP-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009485
Physical Location & Seq
Reverse (-)
14917871 .. 14919988
2118 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
ATGCCTAACCAGTGCAAGGTGTGTCCTATAACAAGTGATCGCCACAAGACTCCACACACGCACACACCGAGTCCATTTTTCTTCCTGCTTCACTCACTTTCAACAAAACCACCAACAATGGCGACCCTGCAGAACTCACCCTCCCTCCACAGGACCCCTGTCCTTAACTCCTTCACCAAGCTACACAGGCAAAGCACATTCCATTGCTGTAGAAAAAGTAATTCTTTTTCGGTAAGAGCAGAGCAGGCTTCAGCAACTTCTACATGCTCTCCTTCTCAAGATAGATCCGGGAGACGCCAAGTGCTAGCAGCAGGAACAGTTGCTTCTTGGGTTCTTCTAACCAACCAACATTCTGTATCATTTGCTGCAGAAAATAAAAAGGGATTTATTCCTGTCACCGACAAGAAAGATGGATACGAATTTGTCTACCCTTTCGGATGGCAGGAAGTAACCATCGAAGGTCAAGACAAGGTATTCAAGGATGTCATTGAGCCATTGGAGACTGCGAGTGTGACACTGTTCCCAACCGTCAAGCAAGATATCAAAGAATTCGGGCCACCGCAGCAGGTGGCTGAAACTTTGATCAAAAAGGTTCTGGCTCCTCCTACCCAGAAAACAAAGCTGATCGAGGCAGTAGAGCACGACATCGATGGGAAAACATATTACACATTTGAGTTCCTTGCTAAGGCTCCAAACTATACTCGCCATGCTCTCAGTACAGTAGCTATCGGCAATGGCAACTTCTACACGTTGACGACGGGGGCTAACGAGAGGAGGTGGGAAAAGATGAAAGACAAGTTACACACCATCGTCGATTCCTTCAAGCTTTTCAAAGTCTTCGATTAA

Protein Analysis

282

Amino Acids

31.64

Weight (kDa)

9.27

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 127 - 275 8.5e-54 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 1 cut(s) 556
AccI GTMKAC 1 cut(s) 426
AciI CCGC 1 cut(s) 560
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 2 cut(s) 419, 548
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 3 cut(s) 16, 150, 685
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 4 cut(s) 102, 478, 823, 832
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 4 cut(s) 181, 622, 725, 826
AluI AGCT 4 cut(s) 181, 622, 725, 826
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 286, 494
AlwI GGATC 1 cut(s) 279
AoxI GGCC 1 cut(s) 554
ApeKI GCWGC 3 cut(s) 308, 365, 562
ApoI RAATTY 2 cut(s) 419, 548
AspS9I GGNCC 2 cut(s) 153, 554
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 129, 166, 388
AsuNHI GCTAGC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 829
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 3 cut(s) 320, 352, 574
BccI CCATC 5 cut(s) 404, 432, 461, 644, 815
BciVI GTATCC 1 cut(s) 407
BclI TGATCA 1 cut(s) 582
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 286, 494
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 3 cut(s) 128, 208, 366
BfuAI ACCTGC 1 cut(s) 556
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 3 cut(s) 309, 366, 563
BlsI GCNGC 3 cut(s) 310, 367, 564
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 153, 554
BmiI GGNNCC 3 cut(s) 155, 600, 690
BmrFI CCNGG 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 308
BoxI GACNNNNGTC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 829
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 295
BsaXI ACNNNNNCTCC 6 cut(s) 125, 129, 155, 159, 253, 283
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 150, 685
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 2 cut(s) 202, 739
BseCI ATCGAT 1 cut(s) 648
BseGI GGATG 2 cut(s) 443, 487
BseLI CCNNNNNNNGG 3 cut(s) 16, 150, 685
BseMI GCAATG 2 cut(s) 202, 739
BseMII CTCAG 1 cut(s) 727
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 591, 787
BseXI GCAGC 3 cut(s) 320, 352, 574
BshFI GGCC 1 cut(s) 556
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 3 cut(s) 16, 150, 685
BsmAI GTCTC 2 cut(s) 286, 494
BsmBI CGTCTC 1 cut(s) 286
BsnI GGCC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 4 cut(s) 37, 284, 582, 624
BspACI CCGC 1 cut(s) 560
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 1 cut(s) 726
BspDI ATCGAT 1 cut(s) 648
BspLI GGNNCC 3 cut(s) 155, 600, 690
BspMAI CTGCAG 2 cut(s) 132, 370
BspMI ACCTGC 1 cut(s) 556
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 279
BsrDI GCAATG 2 cut(s) 202, 739
BsrI ACTGG 1 cut(s) 10
BssMI GATC 4 cut(s) 37, 284, 582, 624
BssNI GRCGYC 1 cut(s) 295
Bst4CI ACNGT 4 cut(s) 319, 519, 529, 721
BstACI GRCGYC 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 246, 306
BstDEI CTNAG 2 cut(s) 684, 713
BstENI CCTNNNNNAGG 1 cut(s) 683
BstF5I GGATG 2 cut(s) 443, 487
BstKTI GATC 4 cut(s) 40, 287, 585, 627
BstMAI GTCTC 2 cut(s) 286, 494
BstMBI GATC 4 cut(s) 37, 284, 582, 624
BstMWI GCNNNNNNNGC 3 cut(s) 187, 245, 562
BstNSI RCATGY 1 cut(s) 267
BstPAI GACNNNNGTC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 3 cut(s) 128, 208, 366
BstV1I GCAGC 3 cut(s) 320, 352, 574
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 648
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 556
BsuTUI ATCGAT 1 cut(s) 648
BtsCI GGATG 2 cut(s) 443, 487
BtsIMutI CAGTG 2 cut(s) 17, 515
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 246, 306
Cfr13I GGNCC 2 cut(s) 153, 554
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 717
CviAII CATG 2 cut(s) 264, 707
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 2 cut(s) 684, 713
DpnI GATC 4 cut(s) 39, 286, 584, 626
DpnII GATC 4 cut(s) 37, 284, 582, 624
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 683
EcoO109I RGGNCCY 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 548
EcoRV GATATC 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 2 cut(s) 267, 710
FaiI YATR 5 cut(s) 29, 265, 661, 699, 708
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 2 cut(s) 263, 706
FbaI TGATCA 1 cut(s) 582
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 309, 366, 563
FokI GGATG 2 cut(s) 450, 494
Fsp4HI GCNGC 3 cut(s) 309, 366, 563
FspBI CTAG 1 cut(s) 305
GluI GCNGC 3 cut(s) 309, 366, 563
HaeIII GGCC 1 cut(s) 556
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 2 cut(s) 267, 710
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 3 cut(s) 49, 70, 815
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 129, 166, 388
Hpy166II GTNNAC 2 cut(s) 427, 753
Hpy188I TCNGA 1 cut(s) 437
Hpy188III TCNNGA 2 cut(s) 278, 464
Hpy8I GTNNAC 2 cut(s) 427, 753
Hpy99I CGWCG 2 cut(s) 760, 815
HpyAV CCTTC 4 cut(s) 181, 282, 452, 829
HpyCH4III ACNGT 4 cut(s) 319, 519, 529, 721
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 3 cut(s) 15, 130, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 245, 562
HpyF3I CTNAG 2 cut(s) 684, 713
HpySE526I ACGT 1 cut(s) 749
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 2 cut(s) 267, 710
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 4 cut(s) 37, 284, 582, 624
LmnI GCTCC 2 cut(s) 604, 694
Lsp1109I GCAGC 3 cut(s) 320, 352, 574
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 4 cut(s) 394, 448, 511, 798
MalI GATC 4 cut(s) 39, 286, 584, 626
MboI GATC 4 cut(s) 37, 284, 582, 624
MboII GAAGA 3 cut(s) 73, 326, 829
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 3 cut(s) 220, 419, 548
MlyI GAGTC 2 cut(s) 43, 79
MnlI CCTC 6 cut(s) 151, 155, 612, 622, 765, 768
MseI TTAA 2 cut(s) 165, 844
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 289
MwoI GCNNNNNNNGC 3 cut(s) 187, 245, 562
NciI CCSGG 1 cut(s) 289
NdeII GATC 4 cut(s) 37, 284, 582, 624
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 267, 710
NlaIV GGNNCC 3 cut(s) 155, 600, 690
NmuCI GTSAC 2 cut(s) 394, 511
NspI RCATGY 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 1 cut(s) 815
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 3 cut(s) 310, 367, 564
PleI GAGTC 2 cut(s) 43, 78
PpsI GAGTC 2 cut(s) 43, 78
PpuMI RGGWCCY 1 cut(s) 153
PshAI GACNNNNGTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 155, 600, 690
PspPI GGNCC 2 cut(s) 153, 554
PspPPI RGGWCCY 1 cut(s) 153
PstI CTGCAG 2 cut(s) 132, 370
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
SaqAI TTAA 2 cut(s) 165, 844
SatI GCNGC 3 cut(s) 309, 366, 563
Sau3AI GATC 4 cut(s) 37, 284, 582, 624
Sau96I GGNCC 2 cut(s) 153, 554
SchI GAGTC 2 cut(s) 43, 79
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 642
SfcI CTRYAG 3 cut(s) 128, 208, 366
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 3 cut(s) 220, 419, 548
SsiI CCGC 1 cut(s) 560
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 4 cut(s) 319, 519, 529, 721
TaiI ACGT 1 cut(s) 752
TaqI TCGA 5 cut(s) 456, 627, 648, 813, 840
TasI AATT 3 cut(s) 220, 419, 548
TatI WGTACW 1 cut(s) 716
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 2 cut(s) 165, 844
Tru9I TTAA 2 cut(s) 165, 844
TscAI CASTG 2 cut(s) 17, 522
TseFI GTSAC 2 cut(s) 394, 511
TseI GCWGC 3 cut(s) 308, 365, 562
Tsp45I GTSAC 2 cut(s) 394, 511
TspDTI ATGAA 1 cut(s) 803
TspRI CASTG 2 cut(s) 17, 522
VpaK11BI GGWCC 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 683
XapI RAATTY 2 cut(s) 419, 548
XceI RCATGY 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.