Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0018531

Physical Location & Seq

Genomic Coordinates Forward (+)

17659370 .. 17661958

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCCGTGGCTTATTAATAGTGCTAATGCCTTCGAGTCATCAAGGACACTTTTTTTCTTGGTGATGTTGCAGACACTTCTCATTCAGAAGAACAAATCTGCTGAAACTTTGGCCTTTTTCGAAATTGGGTTTCCTACACTAAAGACTGAATGGGAAGCATCTGAGTCTGTGGGTGACAGCTCTATAGAAGAGTTCGATACGGAGATGCTAGATTGGGATTGCAGAAAGTTCCTTGATAAGCTTGATTCCAATTTGAAATCACTAAACGCAAATATTCTCATATGCTTAGTTTGGAATTTAATGAAGGCATTTTTGTCTGTGATGCCTGCAAATGTCTCCATGGATGATGATAAGAAGTGGCTTAGCTGGGTTAGGGACTTGTTTGTCTTTTTCTCAGTTTCTAAATTTAAGAAAGTTTTCAAAGAACACCTTCTTTACCTTGTCACGAAGTGCAAGGTCTCCGCTGTTTGCTTCTTGCCCAAGTTTTTCACAGAAGAAGATGTTCCACTTGCAGTCCAAGTTGAAAGTCTTAATTGTTTTGCATATCTCTGTCGTCAACCAGAAGTTAGATTGCCAGTCCAACTTCTTGCGGAATTTCCATCTGTTCTTGTTCCATTGGCTAGTTGTAACCAGGATATAAGAAATGCTGCTATGAGCTGTATTGAGGGGTTACTCACACTTTGGGCTCATGTTGACACTTCGAGCAAGAAAAATGGAAACCATGCAACTTGGATTCATTTTCTTGGTAAGCTTTTGGACTTAGTGGTTCAGCAAAAAAGACTCATCTTATCAGACCAAAACTTTCTTTCTTCCCTTTTGGCCTCTTCGCTCAGCCCATCCTACAAGAACTTCATGGCACCAAAGAATATTGAGCTAAGGGTTGATCAATCTACAAGAGAGAAGATTCTTGCTTTCATTTTAAATTCTGCCCTGAAACTGCCTGATTATGCAAAGCTTTCAATTTTATCTTTGCTTAAAGGAATGGGCAATGCCATTTTGCACGATAGCGAGATGAAGTCATTTTTATCACTGCTTTTGGAAAGACGCAGTCAAGATCATGTCTCCAGCCATAGTTTGTCAAAAATTGAAGTTCAGATACTATGCCATCTACTGGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

374

Amino Acids

42.43

Weight (kDa)

6.46

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_At3g06530	PF24477	1 - 154	1.5e-60	At3g06530-like, ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018531)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g18830
rosa_chinensis	RchiOBHm_Chr1g0354361
rosa_laevigata	RLG00000018687 RLG00000032846
rosa_multiflora	Rmu_sc0033015.1_g000001 Rmu_sc0040727.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298700 Rroxscaffold_4G00308750
rosa_rugosa	Rorug05G0277500
rosa_samantha	Rh1AG091400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	856
AccB7I	CCANNNNNTGG	1 cut(s)	1111
AciI	CCGC	2 cut(s)	462, 590
AcsI	RAATTY	4 cut(s)	295, 404, 593, 922
AdeI	CACNNNGTG	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	1111
AgsI	TTSAA	5 cut(s)	256, 421, 524, 960, 1088
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	7 cut(s)	180, 241, 366, 657, 751, 874, 955
AluI	AGCT	7 cut(s)	180, 241, 366, 657, 751, 874, 955
Alw26I	GTCTC	3 cut(s)	340, 463, 1066
AoxI	GGCC	3 cut(s)	111, 819, 1116
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	4 cut(s)	295, 404, 593, 922
AseI	ATTAAT	1 cut(s)	15
Asp700I	GAANNNNTTC	3 cut(s)	416, 429, 501
AsuHPI	GGTGA	2 cut(s)	73, 185
AsuII	TTCGAA	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	856
BanII	GRGCYC	1 cut(s)	688
BarI	GAAGNNNNNNTAC	2 cut(s)	1080, 1112
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	3 cut(s)	607, 844, 1113
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	1 cut(s)	883
BcoDI	GTCTC	3 cut(s)	340, 463, 1066
BfaI	CTAG	2 cut(s)	209, 621
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	648
BlpI	GCTNAGC	2 cut(s)	362, 830
BlsI	GCNGC	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	3 cut(s)	167, 195, 312
BpmI	CTGGAG	1 cut(s)	1048
Bpu10I	CCTNAGC	1 cut(s)	875
Bpu1102I	GCTNAGC	2 cut(s)	362, 830
Bpu14I	TTCGAA	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	5, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	1111
Bse1I	ACTGG	2 cut(s)	575, 1116
Bse3DI	GCAATG	1 cut(s)	994
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	2 cut(s)	5, 339
BseGI	GGATG	2 cut(s)	349, 836
BseLI	CCNNNNNNNGG	1 cut(s)	1111
BseMI	GCAATG	1 cut(s)	994
BseMII	CTCAG	3 cut(s)	153, 408, 844
BseNI	ACTGG	2 cut(s)	575, 1116
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	366
BshFI	GGCC	3 cut(s)	113, 821, 1118
BshNI	GGYRCC	1 cut(s)	856
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	1111
BsmAI	GTCTC	3 cut(s)	340, 463, 1066
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	113, 821, 1118
Bso31I	GGTCTC	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	883, 1054
Bsp1720I	GCTNAGC	2 cut(s)	362, 830
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	2 cut(s)	462, 590
BspANI	GGCC	3 cut(s)	113, 821, 1118
BspCNI	CTCAG	3 cut(s)	154, 407, 843
BspLI	GGNNCC	1 cut(s)	858
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	856
BspTNI	GGTCTC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	994
BsrI	ACTGG	2 cut(s)	575, 1116
BssECI	CCNNGG	2 cut(s)	5, 339
BssMI	GATC	2 cut(s)	883, 1054
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	632
Bst6I	CTCTTC	2 cut(s)	183, 829
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	7 cut(s)	162, 286, 362, 394, 760, 830, 875
BstDSI	CCRYGG	2 cut(s)	5, 339
BstF5I	GGATG	2 cut(s)	349, 836
BstKTI	GATC	2 cut(s)	886, 1057
BstMAI	GTCTC	3 cut(s)	340, 463, 1066
BstMBI	GATC	2 cut(s)	883, 1054
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	630
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	634
BsuRI	GGCC	3 cut(s)	113, 821, 1118
BtgI	CCRYGG	2 cut(s)	5, 339
BtsCI	GGATG	2 cut(s)	349, 836
BtsI	GCAGTG	1 cut(s)	1028
BtsIMutI	CAGTG	1 cut(s)	1028
Cac8I	GCNNGC	1 cut(s)	327
CseI	GACGC	1 cut(s)	1053
CviAII	CATG	5 cut(s)	340, 689, 722, 853, 1058
DdeI	CTNAG	7 cut(s)	162, 286, 362, 394, 760, 830, 875
DpnI	GATC	2 cut(s)	885, 1056
DpnII	GATC	2 cut(s)	883, 1054
DraI	TTTAAA	1 cut(s)	921
DraIII	CACNNNGTG	1 cut(s)	450
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	2 cut(s)	183, 829
EarI	CTCTTC	2 cut(s)	183, 829
Eco130I	CCWWGG	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	1118
Eco24I	GRGCYC	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	5 cut(s)	343, 692, 725, 856, 1061
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	5 cut(s)	339, 688, 721, 852, 1057
FauNDI	CATATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	883
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	2 cut(s)	356, 823
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	209, 621
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	1048
HaeIII	GGCC	3 cut(s)	113, 821, 1118
HgaI	GACGC	1 cut(s)	1053
Hin1II	CATG	5 cut(s)	343, 692, 725, 856, 1061
HincII	GTYRAC	2 cut(s)	557, 694
HindII	GTYRAC	2 cut(s)	557, 694
HindIII	AAGCTT	3 cut(s)	239, 749, 953
HinfI	GANTC	6 cut(s)	35, 164, 245, 733, 780, 904
HphI	GGTGA	2 cut(s)	73, 185
Hpy166II	GTNNAC	2 cut(s)	557, 694
Hpy188I	TCNGA	4 cut(s)	87, 163, 793, 1095
Hpy188III	TCNNGA	2 cut(s)	445, 1052
Hpy8I	GTNNAC	2 cut(s)	557, 694
HpyAV	CCTTC	3 cut(s)	40, 298, 440
HpyCH4V	TGCA	9 cut(s)	70, 222, 329, 453, 512, 542, 725, 950, 1000
HpyF3I	CTNAG	7 cut(s)	162, 286, 362, 394, 760, 830, 875
Hsp92II	CATG	5 cut(s)	343, 692, 725, 856, 1061
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	2 cut(s)	883, 1054
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	3 cut(s)	167, 195, 312
MaeI	CTAG	2 cut(s)	209, 621
MaeIII	GTNAC	4 cut(s)	173, 442, 626, 669
MalI	GATC	2 cut(s)	885, 1056
MboI	GATC	2 cut(s)	883, 1054
MboII	GAAGA	7 cut(s)	100, 200, 506, 509, 801, 816, 913
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	9 cut(s)	123, 250, 295, 404, 532, 593, 922, 960, 1083
MlyI	GAGTC	3 cut(s)	44, 173, 774
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	3 cut(s)	658, 832, 1108
MroXI	GAANNNNTTC	3 cut(s)	416, 429, 501
MseI	TTAA	6 cut(s)	15, 299, 408, 531, 920, 975
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	632
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	2 cut(s)	883, 1054
NlaIII	CATG	5 cut(s)	343, 692, 725, 856, 1061
NlaIV	GGNNCC	1 cut(s)	858
NmuCI	GTSAC	2 cut(s)	173, 442
NspV	TTCGAA	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	1118
PdmI	GAANNNNTTC	3 cut(s)	416, 429, 501
PfeI	GAWTC	3 cut(s)	245, 733, 904
PflFI	GACNNNGTC	1 cut(s)	1047
PflMI	CCANNNNNTGG	1 cut(s)	1111
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	3 cut(s)	43, 172, 774
PpsI	GAGTC	3 cut(s)	43, 172, 774
PshBI	ATTAAT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	858
PsyI	GACNNNGTC	1 cut(s)	1047
SaqAI	TTAA	6 cut(s)	15, 299, 408, 531, 920, 975
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	2 cut(s)	883, 1054
SchI	GAGTC	3 cut(s)	44, 173, 774
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	3 cut(s)	167, 195, 312
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	120
Sse9I	AATT	9 cut(s)	123, 250, 295, 404, 532, 593, 922, 960, 1083
SseBI	AGGCCT	1 cut(s)	1118
SsiI	CCGC	2 cut(s)	462, 590
SspI	AATATT	2 cut(s)	274, 868
SspMI	CTAG	2 cut(s)	209, 621
StuI	AGGCCT	1 cut(s)	1118
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	339
TaqI	TCGA	4 cut(s)	33, 120, 195, 701
TasI	AATT	9 cut(s)	123, 250, 295, 404, 532, 593, 922, 960, 1083
TfiI	GAWTC	3 cut(s)	245, 733, 904
Tru1I	TTAA	6 cut(s)	15, 299, 408, 531, 920, 975
Tru9I	TTAA	6 cut(s)	15, 299, 408, 531, 920, 975
TscAI	CASTG	1 cut(s)	1035
TseFI	GTSAC	2 cut(s)	173, 442
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	2 cut(s)	173, 442
TspDTI	ATGAA	5 cut(s)	317, 725, 841, 904, 1028
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	1035
Tth111I	GACNNNGTC	1 cut(s)	1047
Van91I	CCANNNNNTGG	1 cut(s)	1111
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	4 cut(s)	295, 404, 593, 922
XmnI	GAANNNNTTC	3 cut(s)	416, 429, 501
XspI	CTAG	2 cut(s)	209, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.