Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018531

Physical Location & Seq

Genomic Coordinates Forward (+)

33950642 .. 33951524

Gene Structure 883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018687

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGAACTGCTGCATTGCCAACATTCAGAAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGAACTTGGAGAACAATTACAATACATACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTCCACTAGTTGGCTTGGTGGCAGGAATGACTTTCTTGGCATTGCTTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCGATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGAAACCATGCAATTCGGATTAATCATCTTGATAAGCTGCTGGACTTGGTGGTCCAGCAGAAAAGGCTAATCCTATCGGACAGGAACTTGCTTCCTTCTCTCTTGGACTCTTTGCTCAGCCCGTCCTTCCGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

9.77

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	1 - 60	3.2e-13	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018531)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g18830
rosa_chinensis	RchiOBHm_Chr1g0354361
rosa_laevigata	RLG00000018687 RLG00000032846
rosa_multiflora	Rmu_sc0033015.1_g000001 Rmu_sc0040727.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298700 Rroxscaffold_4G00308750
rosa_rugosa	Rorug05G0277500
rosa_samantha	Rh1AG091400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	387
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	79
AhlI	ACTAGT	1 cut(s)	148
AluBI	AGCT	3 cut(s)	133, 295, 393
AluI	AGCT	3 cut(s)	133, 295, 393
AlwI	GGATC	1 cut(s)	63
Aor13HI	TCCGGA	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	11, 295
AseI	ATTAAT	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	219
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	12, 296
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	2 cut(s)	13, 297
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse3DI	GCAATG	2 cut(s)	14, 182
BseAI	TCCGGA	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	14, 182
BseMII	CTCAG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	152
Bsp13I	TCCGGA	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	55
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	387
BspPI	GGATC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	14, 182
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	113, 198
BstDEI	CTNAG	1 cut(s)	374
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 322
BstNSI	RCATGY	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	2 cut(s)	80, 266
CviJI	RGCY	7 cut(s)	133, 156, 229, 295, 325, 378, 393
CviKI_1	RGCY	7 cut(s)	133, 156, 229, 295, 325, 378, 393
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	83, 269
FaiI	YATR	7 cut(s)	37, 39, 77, 81, 109, 243, 267
FatI	CATG	2 cut(s)	79, 265
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	12, 296
Fsp4HI	GCNGC	2 cut(s)	12, 296
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	2 cut(s)	12, 296
HapII	CCGG	1 cut(s)	388
Hin1II	CATG	2 cut(s)	83, 269
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	29, 276, 337
Hpy188III	TCNNGA	2 cut(s)	287, 388
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	363, 394
HpyCH4III	ACNGT	2 cut(s)	113, 198
HpyCH4V	TGCA	2 cut(s)	14, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 322
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	83, 269
Kpn2I	TCCGGA	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	5 cut(s)	150, 205, 284, 325, 326
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	149
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	50, 55
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	4 cut(s)	32, 97, 236, 270
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	1 cut(s)	43
MroI	TCCGGA	1 cut(s)	387
MseI	TTAA	2 cut(s)	251, 279
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	1 cut(s)	388
MunI	CAATTG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	209, 322
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	83, 269
NspI	RCATGY	1 cut(s)	83
PciI	ACATGT	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	13, 297
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	251, 279
SatI	GCNGC	2 cut(s)	12, 296
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	359
SetI	ASST	4 cut(s)	54, 135, 297, 395
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	4 cut(s)	32, 97, 236, 270
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	113, 198
TasI	AATT	4 cut(s)	32, 97, 236, 270
Tru1I	TTAA	2 cut(s)	251, 279
Tru9I	TTAA	2 cut(s)	251, 279
TscAI	CASTG	1 cut(s)	201
TseI	GCWGC	2 cut(s)	11, 295
TspRI	CASTG	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	279
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.