Rorug05G0277500

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000683
Physical Location & Seq
Reverse (-)
31443566 .. 31446226
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0277500.1

Sequence Viewer

Length: 990 bp
ATGGGGAGCGTTTTGGGTGAAAGACTGATTGGAGAGCATCCCATGGCAACCCAGGAATTGTTCCGCAGCGTCCGCTCTGCAATCTTGACCTTTTATGCTGCATGGCAATTTAGGAATGGAATAGATGGTTTAAATCTAGACAGTCAGGACAAGGAACAGACAGAGATAACAGAGGAAGCGAATAATGTTGGCAGCAGGTATTACTGTCAGCAGTGTGCTGTCCCTTTGGATGTCAATATGGCATACCCTCTTTGCCAAGGCTGTTCTATGGAAAAACGTGGTTATGCCAGCTCGTTGCACCCTCACATGCTGTCGGAGTCAGAGCCTTCTGCAAGTGACACTGATAGGAATGAACCCATGGTAATCCCTCCTTCCAATCCAACAGTCCCGGATATTGTCAACAACAACAATGGGTCAGCACTAAACAGATTGCTTTCTCATAGCCTTGGTTCCCATGATTACAGCAACTATGGCGGCACACACCAGGCGCCGGCACATGATGATTTCAACCCTAGTCGGTCATTTTTACGTAGAGATGGCTCTGATCATGCTGTCACCAGCAATAGCGTGCCAGGCCATGCAGTAAGGGTCCCTTATGTTTCAAGTTCCAATAGTGGGTTGCTTCCACTTAACCTTGTTGCGAATGTTGGCCCTGACCGGCCACATCATGGGTCAAGGGTTTCCACCCCACGGAAGACTCGTTATGCATTATATGGCATGCTTTTGTCTATTGTGGCTGTACTTGTTTGCATCTTGGACCTCATTCTCAATGCCATGAAACAAAGAAGAATCACGTCTGAGAGTAACAGACTTTGGGGTATCTTACCTGAAGTTTTTGGATTAGCTCTCGCCTGTATTCAGTGCATTAGCTCGGCACTGCAGTATTCATTTCTCTGCAGGCATGCTGCTAATCCTTTGAAAGTATCCCTCGTGCCTTTCTTATTTTTCTTCGTCTTGTATGCTTTCAAATATAGGAATGGAAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

329

Amino Acids

36.34

Weight (kDa)

7.66

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 668
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 3 cut(s) 64, 73, 474
AcoI YGGCCR 1 cut(s) 659
AcuI CTGAAG 1 cut(s) 849
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 1 cut(s) 741
AfiI CCNNNNNNNGG 4 cut(s) 490, 615, 668, 690
AgsI TTSAA 4 cut(s) 508, 603, 919, 967
AjiI CACGTC 1 cut(s) 795
AjnI CCWGG 3 cut(s) 51, 483, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 3 cut(s) 291, 845, 870
AluI AGCT 3 cut(s) 291, 845, 870
AoxI GGCC 3 cut(s) 574, 649, 659
ApeKI GCWGC 4 cut(s) 66, 98, 192, 905
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 589, 650, 757
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 29, 547
AvaII GGWCC 2 cut(s) 589, 757
BanI GGYRCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 929
BbsI GAAGAC 1 cut(s) 701
BbvI GCAGC 4 cut(s) 78, 85, 204, 892
BccI CCATC 2 cut(s) 119, 530
BciT130I CCWGG 3 cut(s) 53, 485, 573
BciVI GTATCC 1 cut(s) 934
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 389
BfaI CTAG 2 cut(s) 137, 513
BfmI CTRYAG 2 cut(s) 878, 895
BfoI RGCGCY 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 186
BfuI GTATCC 1 cut(s) 934
BisI GCNGC 5 cut(s) 67, 99, 193, 475, 906
BlsI GCNGC 5 cut(s) 68, 100, 194, 476, 907
Bme1390I CCNGG 4 cut(s) 53, 389, 485, 573
Bme18I GGWCC 2 cut(s) 589, 757
BmgBI CACGTC 1 cut(s) 795
BmgT120I GGNCC 3 cut(s) 589, 650, 757
BmiI GGNNCC 4 cut(s) 451, 489, 590, 591
BmrFI CCNGG 4 cut(s) 53, 389, 485, 573
BmsI GCATC 2 cut(s) 46, 759
BpiI GAAGAC 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 6 cut(s) 42, 51, 256, 357, 445, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 490, 615, 668, 690
Bse118I RCCGGY 2 cut(s) 490, 657
BseBI CCWGG 3 cut(s) 53, 485, 573
BseDI CCNNGG 6 cut(s) 42, 51, 256, 357, 445, 689
BseGI GGATG 2 cut(s) 37, 235
BseLI CCNNNNNNNGG 4 cut(s) 490, 615, 668, 690
BseMII CTCAG 1 cut(s) 789
BseXI GCAGC 4 cut(s) 78, 85, 204, 892
BshFI GGCC 3 cut(s) 576, 651, 661
BshNI GGYRCC 1 cut(s) 487
BsiSI CCGG 3 cut(s) 389, 491, 658
BslFI GGGAC 3 cut(s) 206, 371, 575
BslI CCNNNNNNNGG 4 cut(s) 490, 615, 668, 690
BsmFI GGGAC 3 cut(s) 206, 371, 575
BsnI GGCC 3 cut(s) 576, 651, 661
Bsp143I GATC 1 cut(s) 544
Bsp19I CCATGG 2 cut(s) 42, 357
BspACI CCGC 3 cut(s) 64, 73, 474
BspANI GGCC 3 cut(s) 576, 651, 661
BspCNI CTCAG 1 cut(s) 790
BspLI GGNNCC 4 cut(s) 451, 489, 590, 591
BspMAI CTGCAG 2 cut(s) 882, 899
BspMI ACCTGC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 75
BsrFI RCCGGY 2 cut(s) 490, 657
BssAI RCCGGY 2 cut(s) 490, 657
BssECI CCNNGG 6 cut(s) 42, 51, 256, 357, 445, 689
BssMI GATC 1 cut(s) 544
BssNI GRCGYC 1 cut(s) 488
BssSI CACGAG 1 cut(s) 929
BssT1I CCWWGG 4 cut(s) 42, 256, 357, 445
Bst2BI CACGAG 1 cut(s) 929
Bst2UI CCWGG 3 cut(s) 53, 485, 573
Bst4CI ACNGT 3 cut(s) 143, 206, 385
BstACI GRCGYC 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 6 cut(s) 289, 492, 569, 719, 899, 903
BstDEI CTNAG 1 cut(s) 798
BstDSI CCRYGG 3 cut(s) 42, 357, 689
BstF5I GGATG 2 cut(s) 37, 235
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 1 cut(s) 547
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 3 cut(s) 72, 471, 573
BstNI CCWGG 3 cut(s) 53, 485, 573
BstNSI RCATGY 3 cut(s) 310, 721, 905
BstSCI CCNGG 4 cut(s) 51, 387, 483, 571
BstSFI CTRYAG 2 cut(s) 878, 895
BstSNI TACGTA 1 cut(s) 530
BstV1I GCAGC 4 cut(s) 78, 85, 204, 892
BstV2I GAAGAC 1 cut(s) 701
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 3 cut(s) 576, 651, 661
BtgI CCRYGG 3 cut(s) 42, 357, 689
BtrI CACGTC 1 cut(s) 795
BtsCI GGATG 2 cut(s) 37, 235
BtsI GCAGTG 2 cut(s) 218, 875
BtsIMutI CAGTG 4 cut(s) 218, 339, 866, 875
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 6 cut(s) 289, 492, 569, 719, 899, 903
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 2 cut(s) 490, 657
Cfr13I GGNCC 3 cut(s) 589, 650, 757
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 740
CviQI GTAC 1 cut(s) 740
DdeI CTNAG 1 cut(s) 798
DinI GGCGCC 1 cut(s) 489
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DraI TTTAAA 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 659
Eco105I TACGTA 1 cut(s) 530
Eco130I CCWWGG 4 cut(s) 42, 256, 357, 445
Eco47I GGWCC 2 cut(s) 589, 757
Eco57I CTGAAG 1 cut(s) 849
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 3 cut(s) 51, 483, 571
EcoT14I CCWWGG 4 cut(s) 42, 256, 357, 445
EcoT22I ATGCAT 1 cut(s) 709
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
ErhI CCWWGG 4 cut(s) 42, 256, 357, 445
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 3 cut(s) 206, 371, 575
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 5 cut(s) 67, 99, 193, 475, 906
FokI GGATG 2 cut(s) 24, 242
Fsp4HI GCNGC 5 cut(s) 67, 99, 193, 475, 906
FspBI CTAG 2 cut(s) 137, 513
GlaI GCGC 1 cut(s) 489
GluI GCNGC 5 cut(s) 67, 99, 193, 475, 906
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 3 cut(s) 576, 651, 661
HapII CCGG 3 cut(s) 389, 491, 658
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 488
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 3 cut(s) 317, 697, 789
HpaII CCGG 3 cut(s) 389, 491, 658
HphI GGTGA 2 cut(s) 29, 547
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 4 cut(s) 316, 322, 544, 799
Hpy188III TCNNGA 3 cut(s) 85, 137, 146
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 3 cut(s) 336, 381, 975
HpyCH4III ACNGT 3 cut(s) 143, 206, 385
HpyCH4IV ACGT 3 cut(s) 277, 529, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 471, 573
HpyF3I CTNAG 1 cut(s) 798
HpySE526I ACGT 3 cut(s) 277, 529, 794
Hsp92I GRCGYC 1 cut(s) 488
HspAI GCGC 1 cut(s) 488
KasI GGCGCC 1 cut(s) 487
KflI GGGWCCC 1 cut(s) 589
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 4 cut(s) 78, 85, 204, 892
LweI GCATC 2 cut(s) 46, 759
MaeI CTAG 2 cut(s) 137, 513
MaeII ACGT 3 cut(s) 277, 529, 794
MaeIII GTNAC 3 cut(s) 335, 553, 803
MalI GATC 1 cut(s) 546
MbiI CCGCTC 1 cut(s) 75
MboI GATC 1 cut(s) 544
MboII GAAGA 3 cut(s) 706, 798, 940
MluCI AATT 3 cut(s) 56, 107, 985
Mly113I GGCGCC 1 cut(s) 488
MlyI GAGTC 2 cut(s) 326, 691
MmeI TCCRAC 2 cut(s) 294, 404
MnlI CCTC 6 cut(s) 166, 258, 312, 378, 770, 938
Mph1103I ATGCAT 1 cut(s) 709
MroNI GCCGGC 1 cut(s) 490
MseI TTAA 2 cut(s) 131, 630
MspI CCGG 3 cut(s) 389, 491, 658
MspR9I CCNGG 4 cut(s) 53, 389, 485, 573
MvaI CCWGG 3 cut(s) 53, 485, 573
MwoI GCNNNNNNNGC 3 cut(s) 72, 471, 573
NaeI GCCGGC 1 cut(s) 492
NarI GGCGCC 1 cut(s) 488
NciI CCSGG 1 cut(s) 389
NcoI CCATGG 2 cut(s) 42, 357
NdeII GATC 1 cut(s) 544
NgoMIV GCCGGC 1 cut(s) 490
NlaIV GGNNCC 4 cut(s) 451, 489, 590, 591
NmeAIII GCCGAG 1 cut(s) 851
NmuCI GTSAC 2 cut(s) 335, 553
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 3 cut(s) 310, 721, 905
PaeI GCATGC 2 cut(s) 721, 905
PcsI WCGNNNNNNNCGW 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 789
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 5 cut(s) 68, 100, 194, 476, 907
PleI GAGTC 2 cut(s) 325, 691
PluTI GGCGCC 1 cut(s) 491
PpsI GAGTC 2 cut(s) 325, 691
Ppu21I YACGTR 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 3 cut(s) 51, 483, 571
PspGI CCWGG 3 cut(s) 51, 483, 571
PspN4I GGNNCC 4 cut(s) 451, 489, 590, 591
PspPI GGNCC 3 cut(s) 589, 650, 757
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 2 cut(s) 882, 899
RsaI GTAC 1 cut(s) 741
RsaNI GTAC 1 cut(s) 740
SaqAI TTAA 2 cut(s) 131, 630
SatI GCNGC 5 cut(s) 67, 99, 193, 475, 906
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 3 cut(s) 589, 650, 757
SchI GAGTC 2 cut(s) 326, 691
ScrFI CCNGG 4 cut(s) 53, 389, 485, 573
SfaNI GCATC 2 cut(s) 46, 759
SfcI CTRYAG 2 cut(s) 878, 895
SfoI GGCGCC 1 cut(s) 489
SinI GGWCC 2 cut(s) 589, 757
SnaBI TACGTA 1 cut(s) 530
SphI GCATGC 2 cut(s) 721, 905
Sse9I AATT 3 cut(s) 56, 107, 985
SsiI CCGC 3 cut(s) 64, 73, 474
SspDI GGCGCC 1 cut(s) 487
SspMI CTAG 2 cut(s) 137, 513
StyD4I CCNGG 4 cut(s) 51, 387, 483, 571
StyI CCWWGG 4 cut(s) 42, 256, 357, 445
TaaI ACNGT 3 cut(s) 143, 206, 385
TaiI ACGT 3 cut(s) 280, 532, 797
TaqII GACCGA 1 cut(s) 507
TasI AATT 3 cut(s) 56, 107, 985
TatI WGTACW 1 cut(s) 739
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 2 cut(s) 131, 630
Tru9I TTAA 2 cut(s) 131, 630
TscAI CASTG 4 cut(s) 218, 346, 866, 882
TseFI GTSAC 2 cut(s) 335, 553
TseI GCWGC 4 cut(s) 66, 98, 192, 905
Tsp45I GTSAC 2 cut(s) 335, 553
TspDTI ATGAA 3 cut(s) 366, 791, 876
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 4 cut(s) 218, 346, 866, 882
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 2 cut(s) 589, 757
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 3 cut(s) 310, 721, 905
XspI CTAG 2 cut(s) 137, 513
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.