Rroxscaffold_5G00336910

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000683
Physical Location & Seq
Forward (+)
4801360 .. 4808729
7370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336910.1

Sequence Viewer

Length: 1203 bp
ATGATGGGCTCGCATAACCTACCATTCAAAGTTGGGGAAGACATAGAATGGAGTTCATTTATGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAACTGTCATGTGCCTTATTCTATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATATATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAGAAGATATTGATGATGCGTCCTCCCTTTCCTCCTATGTATAATGAAAGTAAAAGGCCTGATGTCAATACCATATCGGAAGTGGTAGTTATTGTTAGTGATGTCTGGAAGGTGGGAGATTTAGTTGATTGGTGGAAGGATGATTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAAAAGTTAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGACCTATGAGGCTTCTTGCAACGACTTGCGTGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGGGAGTGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAATCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGGTGATGGAAGTAGGGATGTCCAAGCTATTGTTGGTGTCAAGCAACCTTTAACAGGAAAGGACACACCAGCTGCAGAAACAAATATGGAGTCTGATGTGGCAGATAGTTGGTTTGAGAGAATGAGTTGCACAGATACTGTTTCAAAATTGCATGTTAAAGATGCATCAAATGAAATGGAGGCAACTACAACTAGGGTCGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAAAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTTCTCAGATGGCGTTTCAAAATTGCATGTTGAAGATGCATCAAATGAAATGGAGGCAACTACAACAAGGGTAGACATACTTGATAACACTAAGCCCGTAAAGAGAAAGAAAACTCATGAAGACATAGTGTTAAATTCAATGAACTCTGATACATTAGAAGCTGCACTTTTGGACTTAGAGGAACTTGTAAACCGGATTAAATGGATGAAGGGTATCTTGGAGATTGGATTACCTTTGACTGGTGCAATGCGACCCCGTTGGAAATTTCTTGGAGATCATTCCTCGTCCACCCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

400

Amino Acids

44.97

Weight (kDa)

5.85

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 86 1.8e-08 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 2 cut(s) 828, 975
AciI CCGC 1 cut(s) 522
AcsI RAATTY 2 cut(s) 1036, 1166
AcyI GRCGYC 1 cut(s) 562
AfiI CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1142
AgsI TTSAA 6 cut(s) 28, 458, 774, 921, 935, 1041
AjiI CACGTC 1 cut(s) 434
AjuI GAANNNNNNNTTGG 2 cut(s) 1103, 1135
AluBI AGCT 4 cut(s) 612, 656, 701, 1064
AluI AGCT 4 cut(s) 612, 656, 701, 1064
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 458, 516
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 701, 1064
ApoI RAATTY 2 cut(s) 1036, 1166
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 2 cut(s) 458, 644
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 45, 1029
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 688, 1051
BccI CCATC 3 cut(s) 610, 629, 905
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BcoDI GTCTC 2 cut(s) 458, 516
BfaI CTAG 2 cut(s) 515, 822
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 2 cut(s) 702, 1065
BlsI GCNGC 2 cut(s) 703, 1066
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 6 cut(s) 231, 506, 781, 803, 928, 950
BpiI GAAGAC 2 cut(s) 45, 1029
BpmI CTGGAG 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 2 cut(s) 458, 516
BsaJI CCNNGG 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 1095
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 333, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1142
Bse1I ACTGG 1 cut(s) 1147
Bse3DI GCAATG 2 cut(s) 603, 1155
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 6 cut(s) 370, 412, 497, 539, 652, 1113
BseLI CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1142
BseMI GCAATG 2 cut(s) 603, 1155
BseMII CTCAG 1 cut(s) 921
BseNI ACTGG 1 cut(s) 1147
BseXI GCAGC 2 cut(s) 688, 1051
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 1 cut(s) 1096
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1142
BsmAI GTCTC 2 cut(s) 458, 516
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 2 cut(s) 458, 516
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 11, 574
Bsp143I GATC 1 cut(s) 1177
BspACI CCGC 1 cut(s) 522
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 920
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 706
BspTNI GGTCTC 2 cut(s) 458, 516
BsrDI GCAATG 2 cut(s) 603, 1155
BsrI ACTGG 1 cut(s) 1147
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 1 cut(s) 1177
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 129, 532, 769
BstACI GRCGYC 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 11, 495, 610
BstDEI CTNAG 3 cut(s) 907, 993, 1078
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 6 cut(s) 370, 412, 497, 539, 652, 1113
BstKTI GATC 1 cut(s) 1180
BstMAI GTCTC 2 cut(s) 458, 516
BstMBI GATC 1 cut(s) 1177
BstNSI RCATGY 2 cut(s) 785, 932
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 688, 1051
BstV2I GAAGAC 2 cut(s) 45, 1029
BsuRI GGCC 1 cut(s) 283
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 6 cut(s) 370, 412, 497, 539, 652, 1113
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 3 cut(s) 11, 495, 610
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 1018
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 2 cut(s) 233, 551
CviAII CATG 5 cut(s) 132, 782, 872, 929, 1019
DdeI CTNAG 3 cut(s) 907, 993, 1078
DpnI GATC 1 cut(s) 1179
DpnII GATC 1 cut(s) 1177
Eco130I CCWWGG 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 2 cut(s) 458, 516
Eco47I GGWCC 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 543
EcoT22I ATGCAT 2 cut(s) 796, 943
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 5 cut(s) 135, 785, 875, 932, 1022
FalI AAGNNNNNCTT 4 cut(s) 1053, 1085, 1103, 1135
FaqI GGGAC 1 cut(s) 614
FatI CATG 5 cut(s) 131, 781, 871, 928, 1018
FblI GTMKAC 2 cut(s) 828, 975
Fnu4HI GCNGC 2 cut(s) 702, 1065
FokI GGATG 6 cut(s) 377, 419, 484, 526, 659, 1120
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 702, 1065
FspBI CTAG 2 cut(s) 515, 822
GluI GCNGC 2 cut(s) 702, 1065
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 1096
HgaI GACGC 2 cut(s) 233, 551
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 5 cut(s) 135, 785, 875, 932, 1022
HincII GTYRAC 2 cut(s) 125, 829
HindII GTYRAC 2 cut(s) 125, 829
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 1 cut(s) 719
HpaII CCGG 1 cut(s) 1096
HphI GGTGA 2 cut(s) 458, 644
Hpy166II GTNNAC 5 cut(s) 125, 829, 976, 1093, 1191
Hpy188I TCNGA 5 cut(s) 89, 304, 724, 910, 1051
Hpy188III TCNNGA 5 cut(s) 158, 331, 381, 515, 1019
Hpy8I GTNNAC 5 cut(s) 125, 829, 976, 1093, 1191
HpyAV CCTTC 6 cut(s) 328, 355, 443, 452, 512, 1105
HpyCH4III ACNGT 3 cut(s) 129, 532, 769
HpyCH4IV ACGT 1 cut(s) 433
HpyF3I CTNAG 3 cut(s) 907, 993, 1078
HpySE526I ACGT 1 cut(s) 433
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 5 cut(s) 135, 785, 875, 932, 1022
Kzo9I GATC 1 cut(s) 1177
Lsp1109I GCAGC 2 cut(s) 688, 1051
LweI GCATC 6 cut(s) 231, 506, 781, 803, 928, 950
MaeI CTAG 2 cut(s) 515, 822
MaeII ACGT 1 cut(s) 433
MalI GATC 1 cut(s) 1179
MboI GATC 1 cut(s) 1177
MboII GAAGA 5 cut(s) 50, 241, 907, 947, 1034
MhlI GDGCHC 2 cut(s) 11, 574
MluCI AATT 6 cut(s) 505, 579, 776, 923, 1036, 1166
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 506, 1142
MnlI CCTC 8 cut(s) 258, 267, 447, 466, 802, 949, 1075, 1195
Mph1103I ATGCAT 2 cut(s) 796, 943
MseI TTAA 7 cut(s) 417, 582, 680, 786, 854, 1034, 1101
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 1 cut(s) 1096
NdeII GATC 1 cut(s) 1177
NlaIII CATG 5 cut(s) 135, 785, 875, 932, 1022
NlaIV GGNNCC 1 cut(s) 86
NsiI ATGCAT 2 cut(s) 796, 943
NspI RCATGY 2 cut(s) 785, 932
PaeR7I CTCGAG 1 cut(s) 573
PagI TCATGA 1 cut(s) 1018
PceI AGGCCT 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 2 cut(s) 703, 1066
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 619
PspXI VCTCGAGB 1 cut(s) 573
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 701
SalI GTCGAC 1 cut(s) 827
SaqAI TTAA 7 cut(s) 417, 582, 680, 786, 854, 1034, 1101
SatI GCNGC 2 cut(s) 702, 1065
Sau3AI GATC 1 cut(s) 1177
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 1 cut(s) 728
SduI GDGCHC 2 cut(s) 11, 574
SfaNI GCATC 6 cut(s) 231, 506, 781, 803, 928, 950
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 6 cut(s) 505, 579, 776, 923, 1036, 1166
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 522
SspMI CTAG 2 cut(s) 515, 822
StuI AGGCCT 1 cut(s) 283
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 3 cut(s) 129, 532, 769
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 574, 828
TasI AATT 6 cut(s) 505, 579, 776, 923, 1036, 1166
Tru1I TTAA 7 cut(s) 417, 582, 680, 786, 854, 1034, 1101
Tru9I TTAA 7 cut(s) 417, 582, 680, 786, 854, 1034, 1101
TscAI CASTG 1 cut(s) 537
TseI GCWGC 2 cut(s) 701, 1064
TspRI CASTG 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 619
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 2 cut(s) 1036, 1166
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 2 cut(s) 785, 932
XcmI CCANNNNNNNNNTGG 2 cut(s) 304, 659
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 2 cut(s) 828, 975
XspI CTAG 2 cut(s) 515, 822
Zsp2I ATGCAT 2 cut(s) 796, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.