Rh5CG385600

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000683
Physical Location & Seq
Reverse (-)
50804162 .. 50811973
7812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG385600.1

Sequence Viewer

Length: 1023 bp
ATGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAGCTGTCGTGTGCTTTGGAATATTATGACTTTCCAGATGAAAAAATAATTTGGGAGAAGATATATCAAAACAACCCTGCTGATGGTAAAAGGACAAGAAAGGAGAAGACATTGATGCTGCGTCCTCCCTTTCCTCCTATCTATCGTGAAAGTAAAAGGCCTGATGTCAATACCATATTGGAAGTGATAGTTATTGTCAATGATGCCTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAACAGTGAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGATGTATGAGGCTTCTTACAAGGACCTGCGCTCATCCTTGGATTGGTCTCTAGAATATGGATGGACAGTACCTACACCCAAGGAGAGAGAAAATGGGCATCCTTGTGTTCAAGTAATTCAGCCTGATAATCAAGGAGACATTCCAAGCGTGGTGGCCCAAACTGTAGGTGATGGAAGAAGAGATGTACAGGCAATTGCTGGTGCAGATCAATCTTTAGCAGCAAAGGACTTAGCAGCAAAGGACCCAGCCACTGCAGAAACAAATATGGCGTCTGATGTAGCAGATAGCCTTTTTGGGAAGACGAGTTGCTCAGATAGTGGTTCAAGTTCGCATGTGAAAGATGCATTAAATAAAATGGGGGGAACTGCAACTAGGATAGACATAGTTGATAACGATAGGTCCTTGAAGAAGATGAAAACTGACGAAGGCATAATATTGAATTCGATGAGCTCTGATACATTAGAAGCTGCAATTTTGGACTTGGAGGAACTTGTAAACCGGGTTAAATGGATGAAAGGTATGTTGGAGACTGGAATGCCTTTGACAGGTGCCATGCGCCCCCATTGGAAATTTCTTGGAAATCATACCGCGTTTACGCCAAGTGAAGGTTTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

340

Amino Acids

37.92

Weight (kDa)

5.26

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 953
AccII CGCG 1 cut(s) 995
AciI CCGC 1 cut(s) 993
AcsI RAATTY 2 cut(s) 844, 974
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 2 cut(s) 474, 591
AfiI CCNNNNNNNGG 5 cut(s) 146, 383, 447, 950, 1010
AgsI TTSAA 5 cut(s) 398, 515, 729, 811, 844
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 3 cut(s) 67, 855, 872
AluI AGCT 3 cut(s) 67, 855, 872
Alw21I GWGCWC 1 cut(s) 857
Alw26I GTCTC 3 cut(s) 456, 534, 926
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 2 cut(s) 221, 558
ApeKI GCWGC 4 cut(s) 181, 623, 638, 872
ApoI RAATTY 2 cut(s) 844, 974
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 2 cut(s) 435, 963
AspS9I GGNCC 4 cut(s) 427, 559, 646, 804
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 398, 584
AvaII GGWCC 3 cut(s) 427, 646, 804
BanI GGYRCC 1 cut(s) 953
BanII GRGCYC 1 cut(s) 857
BbsI GAAGAC 2 cut(s) 176, 710
Bbv12I GWGCWC 1 cut(s) 857
BbvI GCAGC 4 cut(s) 168, 635, 650, 859
BccI CCATC 4 cut(s) 140, 299, 459, 569
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 3 cut(s) 456, 534, 926
BfaI CTAG 3 cut(s) 455, 777, 1021
BfmI CTRYAG 2 cut(s) 567, 657
BfuAI ACCTGC 1 cut(s) 438
BisI GCNGC 4 cut(s) 182, 624, 639, 873
BlsI GCNGC 4 cut(s) 183, 625, 640, 874
Bme1390I CCNGG 2 cut(s) 271, 905
Bme18I GGWCC 3 cut(s) 427, 646, 804
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 4 cut(s) 427, 559, 646, 804
BmiI GGNNCC 3 cut(s) 26, 648, 955
BmrFI CCNGG 2 cut(s) 271, 905
BmsI GCATC 4 cut(s) 168, 256, 511, 736
BpiI GAAGAC 2 cut(s) 176, 710
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 905
BsaHI GRCGYC 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 441, 483
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 273, 303
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 383, 447, 950, 1010
Bse1I ACTGG 1 cut(s) 940
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 441, 483
BseGI GGATG 6 cut(s) 310, 352, 437, 470, 502, 921
BseLI CCNNNNNNNGG 5 cut(s) 146, 383, 447, 950, 1010
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 1 cut(s) 940
BseXI GCAGC 4 cut(s) 168, 635, 650, 859
BseYI CCCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 2 cut(s) 223, 560
BshNI GGYRCC 1 cut(s) 953
BsiHKAI GWGCWC 1 cut(s) 857
BsiSI CCGG 1 cut(s) 904
BslI CCNNNNNNNGG 5 cut(s) 146, 383, 447, 950, 1010
BsmAI GTCTC 3 cut(s) 456, 534, 926
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 2 cut(s) 223, 560
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 857
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 1 cut(s) 993
BspANI GGCC 2 cut(s) 223, 560
BspCNI CTCAG 1 cut(s) 728
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 3 cut(s) 26, 648, 955
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 1 cut(s) 940
BssECI CCNNGG 2 cut(s) 441, 483
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 674
BssT1I CCWWGG 2 cut(s) 441, 483
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 3 cut(s) 355, 472, 568
Bst6I CTCTTC 1 cut(s) 577
BstACI GRCGYC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 589
BstDEI CTNAG 2 cut(s) 634, 715
BstENI CCTNNNNNAGG 1 cut(s) 948
BstF5I GGATG 6 cut(s) 310, 352, 437, 470, 502, 921
BstFNI CGCG 1 cut(s) 995
BstHHI GCGC 2 cut(s) 435, 963
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 3 cut(s) 456, 534, 926
BstMBI GATC 1 cut(s) 610
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 269, 903
BstSFI CTRYAG 2 cut(s) 567, 657
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 4 cut(s) 168, 635, 650, 859
BstV2I GAAGAC 2 cut(s) 176, 710
BsuRI GGCC 2 cut(s) 223, 560
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 6 cut(s) 310, 352, 437, 470, 502, 921
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 360, 654
BveI ACCTGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 2 cut(s) 435, 963
Cfr13I GGNCC 4 cut(s) 427, 559, 646, 804
CseI GACGC 2 cut(s) 173, 663
Csp6I GTAC 2 cut(s) 473, 590
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviAII CATG 2 cut(s) 737, 958
CviQI GTAC 2 cut(s) 473, 590
DdeI CTNAG 2 cut(s) 634, 715
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 577
Ecl136II GAGCTC 1 cut(s) 855
Eco130I CCWWGG 2 cut(s) 441, 483
Eco147I AGGCCT 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 857
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 427, 646, 804
Eco53kI GAGCTC 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 855
EcoNI CCTNNNNNAGG 1 cut(s) 948
EcoO109I RGGNCCY 3 cut(s) 427, 646, 804
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 441, 483
EcoT22I ATGCAT 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 857
ErhI CCWWGG 2 cut(s) 441, 483
FaeI CATG 2 cut(s) 740, 961
FatI CATG 2 cut(s) 736, 957
Fnu4HI GCNGC 4 cut(s) 182, 624, 639, 873
FokI GGATG 6 cut(s) 317, 359, 424, 477, 489, 928
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 4 cut(s) 182, 624, 639, 873
FspBI CTAG 3 cut(s) 455, 777, 1021
GlaI GCGC 2 cut(s) 434, 962
GluI GCNGC 4 cut(s) 182, 624, 639, 873
GsaI CCCAGC 1 cut(s) 653
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 223, 560
HapII CCGG 1 cut(s) 904
HgaI GACGC 2 cut(s) 173, 663
HhaI GCGC 2 cut(s) 435, 963
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 2 cut(s) 740, 961
Hin6I GCGC 2 cut(s) 433, 961
HinP1I GCGC 2 cut(s) 433, 961
HpaII CCGG 1 cut(s) 904
HphI GGTGA 2 cut(s) 398, 584
Hpy166II GTNNAC 2 cut(s) 901, 999
Hpy188I TCNGA 4 cut(s) 29, 679, 718, 859
Hpy188III TCNNGA 4 cut(s) 98, 209, 321, 455
Hpy8I GTNNAC 2 cut(s) 901, 999
HpyAV CCTTC 6 cut(s) 295, 352, 383, 392, 824, 1004
HpyCH4III ACNGT 3 cut(s) 355, 472, 568
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 5 cut(s) 608, 659, 749, 773, 875
HpyF3I CTNAG 2 cut(s) 634, 715
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 2 cut(s) 740, 961
HspAI GCGC 2 cut(s) 433, 961
Kzo9I GATC 1 cut(s) 610
Lsp1109I GCAGC 4 cut(s) 168, 635, 650, 859
LweI GCATC 4 cut(s) 168, 256, 511, 736
MaeI CTAG 3 cut(s) 455, 777, 1021
MaeII ACGT 1 cut(s) 373
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 7 cut(s) 133, 181, 591, 594, 715, 823, 826
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 857
MluCI AATT 6 cut(s) 111, 519, 597, 844, 876, 974
MmeI TCCRAC 1 cut(s) 909
MnlI CCTC 5 cut(s) 198, 207, 387, 406, 883
Mph1103I ATGCAT 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 1014
MseI TTAA 2 cut(s) 752, 909
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 2 cut(s) 271, 905
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 945
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 995
NciI CCSGG 1 cut(s) 905
NdeII GATC 1 cut(s) 610
NlaIII CATG 2 cut(s) 740, 961
NlaIV GGNNCC 3 cut(s) 26, 648, 955
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 1 cut(s) 740
PceI AGGCCT 1 cut(s) 223
PctI GAATGC 1 cut(s) 945
PdmI GAANNNNTTC 1 cut(s) 1014
PkrI GCNGC 4 cut(s) 183, 625, 640, 874
PpuMI RGGWCCY 3 cut(s) 427, 646, 804
Psp124BI GAGCTC 1 cut(s) 857
Psp5II RGGWCCY 3 cut(s) 427, 646, 804
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 3 cut(s) 26, 648, 955
PspPI GGNCC 4 cut(s) 427, 559, 646, 804
PspPPI RGGWCCY 3 cut(s) 427, 646, 804
PstI CTGCAG 1 cut(s) 661
PstNI CAGNNNCTG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 67
RsaI GTAC 2 cut(s) 474, 591
RsaNI GTAC 2 cut(s) 473, 590
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 857
SaqAI TTAA 2 cut(s) 752, 909
SatI GCNGC 4 cut(s) 182, 624, 639, 873
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 4 cut(s) 427, 559, 646, 804
ScrFI CCNGG 2 cut(s) 271, 905
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 4 cut(s) 168, 256, 511, 736
SfcI CTRYAG 2 cut(s) 567, 657
SinI GGWCC 3 cut(s) 427, 646, 804
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 6 cut(s) 111, 519, 597, 844, 876, 974
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 1 cut(s) 993
SspI AATATT 2 cut(s) 86, 840
SspMI CTAG 3 cut(s) 455, 777, 1021
SstI GAGCTC 1 cut(s) 857
StuI AGGCCT 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 269, 903
StyI CCWWGG 2 cut(s) 441, 483
TaaI ACNGT 3 cut(s) 355, 472, 568
TaiI ACGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 848
TasI AATT 6 cut(s) 111, 519, 597, 844, 876, 974
TatI WGTACW 1 cut(s) 589
Tru1I TTAA 2 cut(s) 752, 909
Tru9I TTAA 2 cut(s) 752, 909
TscAI CASTG 2 cut(s) 360, 661
TseI GCWGC 4 cut(s) 181, 623, 638, 872
TspDTI ATGAA 5 cut(s) 17, 117, 363, 833, 932
TspRI CASTG 2 cut(s) 360, 661
VpaK11BI GGWCC 3 cut(s) 427, 646, 804
XagI CCTNNNNNAGG 1 cut(s) 948
XapI RAATTY 2 cut(s) 844, 974
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 1 cut(s) 740
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 3 cut(s) 455, 777, 1021
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.