Rh4DG032200

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000683
Physical Location & Seq
Forward (+)
5424327 .. 5434263
9937 bp
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UTR
Exon/CDS
Intron
Rh4DG032200.1

Sequence Viewer

Length: 189 bp
ATGGCTCTCACCATTAGACAACTTTCATCCTCTATTGTTCCAGATGGGCACATTGCAAGCTTGATGGTCCAATCTTTGGATGATGGAAGAAGAGATGTCCGAGCCATTGCTGGTGTCAAGCAACCTTTAACAGGAAATGACACACCAGCTGCAAAAACAAATATGGAGACTGATGTGGCAGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

62

Amino Acids

6.56

Weight (kDa)

4.94

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 76, 131
AluBI AGCT 2 cut(s) 60, 149
AluI AGCT 2 cut(s) 60, 149
Alw26I GTCTC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 38, 58, 77
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 131
Bse3DI GCAATG 2 cut(s) 51, 105
BseGI GGATG 2 cut(s) 26, 85
BseLI CCNNNNNNNGG 2 cut(s) 76, 131
BseMI GCAATG 2 cut(s) 51, 105
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 76, 131
BsmAI GTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 51
BsrDI GCAATG 2 cut(s) 51, 105
Bst6I CTCTTC 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 58
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 26, 85
BstMAI GTCTC 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 26, 85
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 67
CviJI RGCY 4 cut(s) 5, 60, 104, 149
CviKI_1 RGCY 4 cut(s) 5, 60, 104, 149
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 129
FaiI YATR 3 cut(s) 164, 185, 187
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 13, 92
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 56, 152
LpnPI CCDG 4 cut(s) 54, 96, 117, 159
Lsp1109I GCAGC 1 cut(s) 136
MboII GAAGA 2 cut(s) 99, 102
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 1 cut(s) 40
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 51
SetI ASST 3 cut(s) 62, 127, 151
SgeI CNNG 8 cut(s) 53, 69, 73, 113, 123, 130, 144, 158
SinI GGWCC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 15
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.