Rorug05G0277300

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000683
Physical Location & Seq
Reverse (-)
31399822 .. 31403934
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0277300.1

Sequence Viewer

Length: 624 bp
ATGGAAGGTACAGTCGTTAGAAGAGTTATTCCCTCAGACAATAGTTGCCTCTTCAATGCAGTTGGGTATGTTATGGACCATGACAAGCAAAAAGCTGCTGAATTGAGACAGGTTATAGCTGCAACGGTGGCAAGTGATCCAACGAAATATTCTGAAGCAATTCTGGGTAAACCAAATGAAGAGTATTGTGCTTGGATTCTCAACCCAGAGAAGTGGGGAGGTGCTATCGAGCTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAGACTACAAGATGCGATTTGTATGGTCAGGAGAAAAACTATTCTGAAAGGGTTATGCTGATCTATGATGGGCTTCACTACGATGCTTTAGCTATGTCTCCATTTGAAGAAGCCCCGGAGGAGTTTGATCAGACTATATTTGCAGTTAAGAACAAGACCATTGGGCCAGTGGAGGGCATCACTCTTAATCTTGTGAAAGAGCAACAACGTAAAAGGAGCTATACAGACACTGCCAACTTCACTTTGCGCTGTGGGGTGTGCCAAGTTGGACTTGTTGGCCAGAAGGAGGCTGTAGAGCATGCAAAGGCGACTGGCCATGTCAACTTTCAAGAATACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

207

Amino Acids

23.29

Weight (kDa)

5.09

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 11 - 112 3.8e-09 OTU-like cysteine protease
zf-C2H2_OTU1_C PF24560 172 - 206 1.4e-22 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 559, 595
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 455, 568
AgsI TTSAA 4 cut(s) 55, 237, 389, 611
AjiI CACGTC 1 cut(s) 260
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 5 cut(s) 95, 119, 232, 374, 501
AluI AGCT 5 cut(s) 95, 119, 232, 374, 501
Alw26I GTCTC 2 cut(s) 100, 384
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 3 cut(s) 446, 559, 595
ApeKI GCWGC 3 cut(s) 95, 119, 269
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 2 cut(s) 76, 446
AsuC2I CCSGG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 76
BaeI ACNNNNGTAYC 1 cut(s) 33
BalI TGGCCA 2 cut(s) 561, 597
BbvI GCAGC 3 cut(s) 82, 106, 281
BccI CCATC 1 cut(s) 344
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 100, 384
BfmI CTRYAG 1 cut(s) 573
BisI GCNGC 3 cut(s) 96, 120, 270
BlsI GCNGC 3 cut(s) 97, 121, 271
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 76, 446
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 3 cut(s) 284, 355, 468
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 568
Bse1I ACTGG 2 cut(s) 449, 598
BseDI CCNNGG 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 455, 568
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 449, 598
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 82, 106, 281
BshFI GGCC 3 cut(s) 448, 561, 597
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 455, 568
BsmAI GTCTC 2 cut(s) 100, 384
BsnI GGCC 3 cut(s) 448, 561, 597
Bsp143I GATC 3 cut(s) 136, 342, 409
BspANI GGCC 3 cut(s) 448, 561, 597
BspCNI CTCAG 1 cut(s) 47
BspPI GGATC 1 cut(s) 131
BsrI ACTGG 2 cut(s) 449, 598
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 136, 342, 409
Bst4CI ACNGT 2 cut(s) 13, 127
Bst6I CTCTTC 3 cut(s) 16, 56, 174
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 3 cut(s) 139, 345, 412
BstMAI GTCTC 2 cut(s) 100, 384
BstMBI GATC 3 cut(s) 136, 342, 409
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 82, 106, 281
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 3 cut(s) 448, 561, 597
BtrI CACGTC 1 cut(s) 260
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 456, 510
Cac8I GCNNGC 1 cut(s) 582
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 76, 446
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 80, 581, 599
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 34
DpnI GATC 3 cut(s) 138, 344, 411
DpnII GATC 3 cut(s) 136, 342, 409
EaeI YGGCCR 2 cut(s) 559, 595
Eam1104I CTCTTC 3 cut(s) 16, 56, 174
EarI CTCTTC 3 cut(s) 16, 56, 174
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 174
EcoRV GATATC 1 cut(s) 280
FaeI CATG 3 cut(s) 83, 584, 602
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FatI CATG 3 cut(s) 79, 580, 598
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 96, 120, 270
Fsp4HI GCNGC 3 cut(s) 96, 120, 270
GlaI GCGC 1 cut(s) 530
GluI GCNGC 3 cut(s) 96, 120, 270
HaeIII GGCC 3 cut(s) 448, 561, 597
HapII CCGG 1 cut(s) 398
HhaI GCGC 1 cut(s) 531
Hin1II CATG 3 cut(s) 83, 584, 602
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 170, 604
Hpy188I TCNGA 4 cut(s) 37, 154, 328, 414
Hpy188III TCNNGA 3 cut(s) 283, 311, 611
Hpy8I GTNNAC 2 cut(s) 170, 604
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 2 cut(s) 13, 127
HpyCH4IV ACGT 2 cut(s) 259, 490
HpyCH4V TGCA 5 cut(s) 59, 122, 269, 425, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 2 cut(s) 259, 490
Hsp92II CATG 3 cut(s) 83, 584, 602
HspAI GCGC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 136, 342, 409
LmnI GCTCC 1 cut(s) 498
LpnPI CCDG 9 cut(s) 95, 149, 219, 296, 296, 411, 462, 575, 579
Lsp1109I GCAGC 3 cut(s) 82, 106, 281
LweI GCATC 3 cut(s) 284, 355, 468
MaeII ACGT 2 cut(s) 259, 490
MalI GATC 3 cut(s) 138, 344, 411
MboI GATC 3 cut(s) 136, 342, 409
MboII GAAGA 4 cut(s) 33, 43, 191, 401
MlsI TGGCCA 2 cut(s) 561, 597
MluCI AATT 3 cut(s) 101, 159, 264
MluNI TGGCCA 2 cut(s) 561, 597
MmeI TCCRAC 2 cut(s) 164, 529
MnlI CCTC 6 cut(s) 43, 59, 212, 394, 448, 562
Mox20I TGGCCA 2 cut(s) 561, 597
MroXI GAANNNNTTC 1 cut(s) 159
MscI TGGCCA 2 cut(s) 561, 597
MseI TTAA 2 cut(s) 429, 468
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 2 cut(s) 561, 597
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 398
NdeI CATATG 1 cut(s) 274
NdeII GATC 3 cut(s) 136, 342, 409
NlaIII CATG 3 cut(s) 83, 584, 602
NspI RCATGY 1 cut(s) 584
PaeI GCATGC 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 97, 121, 271
PspPI GGNCC 2 cut(s) 76, 446
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 2 cut(s) 429, 468
SatI GCNGC 3 cut(s) 96, 120, 270
Sau3AI GATC 3 cut(s) 136, 342, 409
Sau96I GGNCC 2 cut(s) 76, 446
ScrFI CCNGG 1 cut(s) 398
SfaNI GCATC 3 cut(s) 284, 355, 468
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 363
SphI GCATGC 1 cut(s) 584
Sse9I AATT 3 cut(s) 101, 159, 264
SspI AATATT 2 cut(s) 149, 240
StyD4I CCNGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 13, 127
TaiI ACGT 2 cut(s) 262, 493
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 101, 159, 264
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 429, 468
Tru9I TTAA 2 cut(s) 429, 468
TscAI CASTG 2 cut(s) 456, 517
TseI GCWGC 3 cut(s) 95, 119, 269
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 2 cut(s) 456, 517
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.