RchiOBHm_Chr7g0211841

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000683
Physical Location & Seq
Forward (+)
29040864 .. 29051163
10300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18952

Sequence Viewer

Length: 1197 bp
ATGATGGGCTCGCATAACCTACCATTCAAAGTTGGGGAAGACATAGAATGGAGTTCATTCATGAAAGGTTATCGCGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAACTGTCATGTGCCTTGGAATATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATGTATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAGAAGATATTGATGATGCGTCCTCCCTTTCCTCCCATGTATAATGAAAGTAAAAGGCCTGATGTCAATACTATATCGGAAGTGGTAGTTATTGTCAATGATATCTGGAAGGTGGGAGATTTAGTTGATTGGTGGAAGGATGATTGTTATTGGTCTGGAAAGGTAGCAGAAGTATTAGGGGATGAAAAAGTTAAGGTTGAGCTGCCACTTCCTCCTGCTGGTGAAGGAGTTGAAGGAGAGACCTATGAGGCTTCTTGCAAGGACTTGCGTGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGAGAATGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAGTCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGATGATGGAAGAAGGGATGCCCAAGCTATTGCTGGTGTCAAGCAACCTTTAACAGGAAAGGACACACCAACTGCAGAAACAAATATGGAGTCTGATGTGGCAGATAGTGGGTTTGAGAAGATGAGTTGCCCAGATACTGTTTCAAAATTTAAACATGCATCAAATGAAATGGAGGCAACTACAACTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAGAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTGCTCAGATAGCGTTTCAAAATTGCATGTTGAAGAGGCATCAAATGAAATGGAGGCAACTACAACAAGGGTAGACATACTTGATAACACTATGCCCTTAAAGAGGAACAAAACTCATGAAGACATTGTGTTAAATTCAACGAATTCTGATACATTAGAAGCTGCACTTTTGGACTTGGAAGAACTTGTAAACCGGATTAAATGGATGAAGGGTATCTTGGGGATTGGATTACCTTTGACTGGTGCGATGCGACCCCGTTGGAAATTTCTTGGAGATCATTCTTTGTCCACCTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

398

Amino Acids

44.73

Weight (kDa)

5.61

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 86 1.3e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 2 cut(s) 822, 969
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 75, 522
AcsI RAATTY 4 cut(s) 776, 1030, 1039, 1160
AcyI GRCGYC 1 cut(s) 562
AfiI CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 999, 1136
AgsI TTSAA 6 cut(s) 28, 458, 774, 915, 929, 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AluBI AGCT 4 cut(s) 427, 612, 656, 1058
AluI AGCT 4 cut(s) 427, 612, 656, 1058
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 458, 516
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 427, 1058
ApoI RAATTY 4 cut(s) 776, 1030, 1039, 1160
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 45, 1023
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 414, 1045
BccI CCATC 2 cut(s) 610, 629
BcoDI GTCTC 2 cut(s) 458, 516
BfaI CTAG 2 cut(s) 515, 816
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 2 cut(s) 428, 1059
BlsI GCNGC 2 cut(s) 429, 1060
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 6 cut(s) 231, 506, 637, 797, 944, 1134
BpiI GAAGAC 2 cut(s) 45, 1023
BpmI CTGGAG 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 2 cut(s) 458, 516
BsaJI CCNNGG 2 cut(s) 138, 543
BsaWI WCCGGW 1 cut(s) 1089
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 333, 363
Bsc4I CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 999, 1136
Bse1I ACTGG 1 cut(s) 1141
Bse3DI GCAATG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 138, 543
BseGI GGATG 7 cut(s) 370, 412, 497, 539, 637, 652, 1107
BseLI CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 999, 1136
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 1 cut(s) 1141
BseXI GCAGC 2 cut(s) 414, 1045
BsgI GTGCAG 1 cut(s) 1044
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 1 cut(s) 1090
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 6 cut(s) 443, 507, 628, 683, 999, 1136
BsmAI GTCTC 2 cut(s) 458, 516
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 2 cut(s) 458, 516
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 11, 574
Bsp143I GATC 1 cut(s) 1171
BspACI CCGC 2 cut(s) 75, 522
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 914
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 2 cut(s) 60, 1012
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 706
BspTNI GGTCTC 2 cut(s) 458, 516
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 1141
BssECI CCNNGG 2 cut(s) 138, 543
BssMI GATC 1 cut(s) 1171
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 2 cut(s) 138, 543
Bst4CI ACNGT 3 cut(s) 129, 532, 769
Bst6I CTCTTC 1 cut(s) 924
BstACI GRCGYC 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 11, 495, 610
BstDEI CTNAG 1 cut(s) 901
BstENI CCTNNNNNAGG 2 cut(s) 681, 997
BstF5I GGATG 7 cut(s) 370, 412, 497, 539, 637, 652, 1107
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 1 cut(s) 1174
BstMAI GTCTC 2 cut(s) 458, 516
BstMBI GATC 1 cut(s) 1171
BstMWI GCNNNNNNNGC 1 cut(s) 906
BstNSI RCATGY 2 cut(s) 788, 926
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 414, 1045
BstV2I GAAGAC 2 cut(s) 45, 1023
BsuRI GGCC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 1157
BtsCI GGATG 7 cut(s) 370, 412, 497, 539, 637, 652, 1107
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 3 cut(s) 11, 495, 610
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 2 cut(s) 60, 1012
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 2 cut(s) 233, 551
CviAII CATG 7 cut(s) 61, 132, 262, 785, 866, 923, 1013
DdeI CTNAG 1 cut(s) 901
DpnI GATC 1 cut(s) 1173
DpnII GATC 1 cut(s) 1171
DraI TTTAAA 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 2 cut(s) 138, 543
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 2 cut(s) 458, 516
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 573
EcoNI CCTNNNNNAGG 2 cut(s) 681, 997
EcoRI GAATTC 1 cut(s) 1039
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 138, 543
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 138, 543
FaeI CATG 7 cut(s) 64, 135, 265, 788, 869, 926, 1016
FalI AAGNNNNNCTT 4 cut(s) 1047, 1079, 1097, 1129
FaqI GGGAC 1 cut(s) 614
FatI CATG 7 cut(s) 60, 131, 261, 784, 865, 922, 1012
FblI GTMKAC 2 cut(s) 822, 969
Fnu4HI GCNGC 2 cut(s) 428, 1059
FokI GGATG 7 cut(s) 377, 419, 484, 526, 644, 659, 1114
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 428, 1059
FspBI CTAG 2 cut(s) 515, 816
GluI GCNGC 2 cut(s) 428, 1059
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 1090
HgaI GACGC 2 cut(s) 233, 551
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 7 cut(s) 64, 135, 265, 788, 869, 926, 1016
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 1 cut(s) 719
HpaII CCGG 1 cut(s) 1090
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 5 cut(s) 125, 823, 970, 1087, 1185
Hpy188I TCNGA 5 cut(s) 89, 304, 724, 904, 1045
Hpy188III TCNNGA 6 cut(s) 61, 158, 331, 381, 515, 1013
Hpy8I GTNNAC 5 cut(s) 125, 823, 970, 1087, 1185
HpyAV CCTTC 7 cut(s) 328, 355, 443, 452, 512, 636, 1099
HpyCH4III ACNGT 3 cut(s) 129, 532, 769
HpyCH4V TGCA 7 cut(s) 483, 497, 608, 704, 788, 922, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 906
HpyF3I CTNAG 1 cut(s) 901
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 7 cut(s) 64, 135, 265, 788, 869, 926, 1016
Kzo9I GATC 1 cut(s) 1171
Lsp1109I GCAGC 2 cut(s) 414, 1045
LweI GCATC 6 cut(s) 231, 506, 637, 797, 944, 1134
MaeI CTAG 2 cut(s) 515, 816
MalI GATC 1 cut(s) 1173
MboI GATC 1 cut(s) 1171
MboII GAAGA 8 cut(s) 50, 241, 651, 760, 901, 941, 1028, 1088
MhlI GDGCHC 2 cut(s) 11, 574
MluCI AATT 7 cut(s) 505, 579, 776, 917, 1030, 1039, 1160
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 506, 1136
MnlI CCTC 8 cut(s) 258, 267, 447, 466, 796, 925, 943, 993
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 8 cut(s) 417, 582, 680, 780, 848, 995, 1028, 1095
MspI CCGG 1 cut(s) 1090
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 906
NdeII GATC 1 cut(s) 1171
NlaIII CATG 7 cut(s) 64, 135, 265, 788, 869, 926, 1016
NlaIV GGNNCC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 2 cut(s) 788, 926
PaeR7I CTCGAG 1 cut(s) 573
PagI TCATGA 2 cut(s) 60, 1012
PceI AGGCCT 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 2 cut(s) 429, 1060
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 619
PspXI VCTCGAGB 1 cut(s) 573
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 767
SaqAI TTAA 8 cut(s) 417, 582, 680, 780, 848, 995, 1028, 1095
SatI GCNGC 2 cut(s) 428, 1059
Sau3AI GATC 1 cut(s) 1171
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 1 cut(s) 728
SduI GDGCHC 2 cut(s) 11, 574
SfaNI GCATC 6 cut(s) 231, 506, 637, 797, 944, 1134
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 7 cut(s) 505, 579, 776, 917, 1030, 1039, 1160
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 2 cut(s) 75, 522
SspI AATATT 1 cut(s) 146
SspMI CTAG 2 cut(s) 515, 816
StuI AGGCCT 1 cut(s) 283
StyI CCWWGG 2 cut(s) 138, 543
TaaI ACNGT 3 cut(s) 129, 532, 769
TaqI TCGA 1 cut(s) 574
TasI AATT 7 cut(s) 505, 579, 776, 917, 1030, 1039, 1160
Tru1I TTAA 8 cut(s) 417, 582, 680, 780, 848, 995, 1028, 1095
Tru9I TTAA 8 cut(s) 417, 582, 680, 780, 848, 995, 1028, 1095
TscAI CASTG 1 cut(s) 537
TseI GCWGC 2 cut(s) 427, 1058
TspRI CASTG 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 619
XagI CCTNNNNNAGG 2 cut(s) 681, 997
XapI RAATTY 4 cut(s) 776, 1030, 1039, 1160
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 2 cut(s) 788, 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 2 cut(s) 822, 969
XspI CTAG 2 cut(s) 515, 816
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.