Rh4DG031900

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000683
Physical Location & Seq
Forward (+)
5384535 .. 5401562
17028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG031900.1

Sequence Viewer

Length: 1389 bp
ATGTGGGAGATTGCTCATCGTTATGTATTGACAAATACTACAGAGCTTGATCCATGGAAAGATTTACATAAAGATGAGCTTAAGCTCGTGGACAAGTGTCTTGAAAAAAACACAAGTCTTCTACAAACGAAACATCAGAGGACTTTTAGTGATTGGTTGGCGGATAAAGTCAACGAATTCCAGATTATGATGGGCTCGCATAACCTACCATTCAAAGTTGGGGAAGACATAGAATGGAGTTCATTTATGAAAGGTTATCGCGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAACTGTCATGTGCCTTATTCTATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATATATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAGAAGATATTGATGATGCGTCCTCCCTTTCCTCCTATGTATAATGAAAGTAAAAGGCCTGATGTCAATACTATATCAGAAGTGGTAGTTATTGTCAGTGATGTCTGGAAGGTGGGAGATTTAGTTGATTGGTGGAAGGATGATTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAAAAGTTAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGACCTATGAGGCTTCTTGCAACGACTTGCGTGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGAGAGTGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAATCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGGTGATGGAATTAGGGATGTCCAAGTTATTGCTGGTGTCAAGCAACCTTTAACAGGAAAGGACACACCAGCTGCAGAAACAAATATGGAGTCTGATGTGGCAGATAGTGGGTTTGAGAGAATGAGTTGCCCAGATACTGTTTCAAAATTGCATGTTAAAGATGCATCAAATGAAATGGAGGCAACTACAACTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAAAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTTCTCAGATGGCGTTTCAAAATTGCATGTTGAAGATGCATCAAATGAAATGGAGGCAACTACAACAAGGGTAGACATACTTGATAACACTAAGCCCGTAAAGAGAAAGAAAACTCATGAAGACATAGTGTTAAATTCAATGAACTCTGATACATTAGAAGCTGCACTTTTGGACTTGGAGGAACTTGTAAACCGGATTAAATGGATGAAGGGTATCTTGGAGATTGGATTACCTTTGACTGGTGCGATGCGACCCCGTTGGAAATTTCTTGGAGATCATTCCTCGTCCACCCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

462

Amino Acids

52.44

Weight (kDa)

5.75

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 74 - 148 2.3e-08 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 814
AccI GTMKAC 2 cut(s) 1014, 1161
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 161, 261, 708
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 3 cut(s) 176, 1222, 1352
AcyI GRCGYC 1 cut(s) 748
AfiI CCNNNNNNNGG 5 cut(s) 629, 693, 814, 869, 1328
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 7 cut(s) 104, 214, 644, 960, 1107, 1121, 1227
AjiI CACGTC 1 cut(s) 620
AjuI GAANNNNNNNTTGG 2 cut(s) 1289, 1321
AluBI AGCT 6 cut(s) 46, 79, 85, 798, 887, 1250
AluI AGCT 6 cut(s) 46, 79, 85, 798, 887, 1250
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 2 cut(s) 644, 702
AlwI GGATC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 953
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 887, 1250
ApoI RAATTY 3 cut(s) 176, 1222, 1352
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AspS9I GGNCC 1 cut(s) 805
AsuHPI GGTGA 2 cut(s) 644, 830
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 805
BanII GRGCYC 1 cut(s) 197
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 3 cut(s) 110, 231, 1215
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 2 cut(s) 874, 1237
BccI CCATC 4 cut(s) 184, 796, 815, 1091
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BcoDI GTCTC 2 cut(s) 644, 702
BfaI CTAG 2 cut(s) 701, 1008
BfmI CTRYAG 2 cut(s) 39, 888
BfrI CTTAAG 1 cut(s) 80
BisI GCNGC 2 cut(s) 888, 1251
BlsI GCNGC 2 cut(s) 889, 1252
Bme18I GGWCC 1 cut(s) 805
BmeT110I CYCGRG 1 cut(s) 759
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 7 cut(s) 417, 692, 967, 989, 1114, 1136, 1326
BoxI GACNNNNGTC 1 cut(s) 96
BpiI GAAGAC 3 cut(s) 110, 231, 1215
BpmI CTGGAG 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 748
BsaI GGTCTC 2 cut(s) 644, 702
BsaJI CCNNGG 2 cut(s) 53, 729
BsaWI WCCGGW 1 cut(s) 1281
BsaXI ACNNNNNCTCC 4 cut(s) 292, 322, 519, 549
Bsc4I CCNNNNNNNGG 5 cut(s) 629, 693, 814, 869, 1328
Bse1I ACTGG 1 cut(s) 1333
Bse3DI GCAATG 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 53, 729
BseGI GGATG 6 cut(s) 556, 598, 683, 725, 838, 1299
BseLI CCNNNNNNNGG 5 cut(s) 629, 693, 814, 869, 1328
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 1 cut(s) 1107
BseNI ACTGG 1 cut(s) 1333
BseXI GCAGC 2 cut(s) 874, 1237
BsgI GTGCAG 1 cut(s) 1236
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 760
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 1 cut(s) 1282
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 5 cut(s) 629, 693, 814, 869, 1328
BsmAI GTCTC 2 cut(s) 644, 702
BsmFI GGGAC 1 cut(s) 800
BsnI GGCC 1 cut(s) 469
Bso31I GGTCTC 2 cut(s) 644, 702
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 2 cut(s) 197, 760
Bsp143I GATC 2 cut(s) 49, 1363
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 3 cut(s) 161, 261, 708
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 1106
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 1204
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 80
BspTNI GGTCTC 2 cut(s) 644, 702
BsrDI GCAATG 1 cut(s) 789
BsrI ACTGG 1 cut(s) 1333
BssECI CCNNGG 2 cut(s) 53, 729
BssMI GATC 2 cut(s) 49, 1363
BssNI GRCGYC 1 cut(s) 748
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 53, 729
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 315, 718, 955
BstACI GRCGYC 1 cut(s) 748
BstAFI CTTAAG 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 197, 681, 796
BstDEI CTNAG 2 cut(s) 1093, 1179
BstDSI CCRYGG 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 6 cut(s) 556, 598, 683, 725, 838, 1299
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 2 cut(s) 52, 1366
BstMAI GTCTC 2 cut(s) 644, 702
BstMBI GATC 2 cut(s) 49, 1363
BstNSI RCATGY 2 cut(s) 971, 1118
BstPAI GACNNNNGTC 1 cut(s) 96
BstSFI CTRYAG 2 cut(s) 39, 888
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 874, 1237
BstV2I GAAGAC 3 cut(s) 110, 231, 1215
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 1349
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 6 cut(s) 556, 598, 683, 725, 838, 1299
BtsIMutI CAGTG 2 cut(s) 514, 723
Cac8I GCNNGC 3 cut(s) 197, 681, 796
CaiI CAGNNNCTG 1 cut(s) 953
CciI TCATGA 1 cut(s) 1204
Cfr13I GGNCC 1 cut(s) 805
CseI GACGC 2 cut(s) 419, 737
CviAII CATG 6 cut(s) 54, 318, 968, 1058, 1115, 1205
DdeI CTNAG 2 cut(s) 1093, 1179
DpnI GATC 2 cut(s) 51, 1365
DpnII GATC 2 cut(s) 49, 1363
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 53, 729
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 2 cut(s) 644, 702
Eco47I GGWCC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoRI GAATTC 1 cut(s) 176
EcoT14I CCWWGG 2 cut(s) 53, 729
EcoT22I ATGCAT 2 cut(s) 982, 1129
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 2 cut(s) 53, 729
FaeI CATG 6 cut(s) 57, 321, 971, 1061, 1118, 1208
FalI AAGNNNNNCTT 6 cut(s) 63, 95, 1239, 1271, 1289, 1321
FaqI GGGAC 1 cut(s) 800
FatI CATG 6 cut(s) 53, 317, 967, 1057, 1114, 1204
FblI GTMKAC 2 cut(s) 1014, 1161
Fnu4HI GCNGC 2 cut(s) 888, 1251
FokI GGATG 6 cut(s) 563, 605, 670, 712, 845, 1306
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 888, 1251
FspBI CTAG 2 cut(s) 701, 1008
GluI GCNGC 2 cut(s) 888, 1251
GsuI CTGGAG 1 cut(s) 319
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 1282
HgaI GACGC 2 cut(s) 419, 737
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 6 cut(s) 57, 321, 971, 1061, 1118, 1208
HincII GTYRAC 2 cut(s) 172, 311
HindII GTYRAC 2 cut(s) 172, 311
HindIII AAGCTT 1 cut(s) 796
HinfI GANTC 1 cut(s) 905
HpaII CCGG 1 cut(s) 1282
HphI GGTGA 2 cut(s) 644, 830
Hpy166II GTNNAC 7 cut(s) 91, 172, 311, 1015, 1162, 1279, 1377
Hpy188I TCNGA 6 cut(s) 138, 275, 490, 910, 1096, 1237
Hpy188III TCNNGA 7 cut(s) 101, 181, 344, 517, 567, 701, 1205
Hpy8I GTNNAC 7 cut(s) 91, 172, 311, 1015, 1162, 1279, 1377
HpyAV CCTTC 6 cut(s) 514, 541, 629, 638, 698, 1291
HpyCH4III ACNGT 3 cut(s) 315, 718, 955
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 9 cut(s) 669, 683, 794, 890, 967, 980, 1114, 1127, 1253
HpyF3I CTNAG 2 cut(s) 1093, 1179
HpySE526I ACGT 1 cut(s) 619
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 6 cut(s) 57, 321, 971, 1061, 1118, 1208
Kzo9I GATC 2 cut(s) 49, 1363
Lsp1109I GCAGC 2 cut(s) 874, 1237
LweI GCATC 7 cut(s) 417, 692, 967, 989, 1114, 1136, 1326
MaeI CTAG 2 cut(s) 701, 1008
MaeII ACGT 1 cut(s) 619
MalI GATC 2 cut(s) 51, 1365
MboI GATC 2 cut(s) 49, 1363
MboII GAAGA 6 cut(s) 110, 236, 427, 1093, 1133, 1220
MhlI GDGCHC 2 cut(s) 197, 760
MluCI AATT 8 cut(s) 176, 691, 765, 825, 962, 1109, 1222, 1352
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 2 cut(s) 692, 1328
MnlI CCTC 9 cut(s) 132, 444, 453, 633, 652, 988, 1135, 1261, 1381
Mph1103I ATGCAT 2 cut(s) 982, 1129
MseI TTAA 8 cut(s) 81, 603, 768, 866, 972, 1040, 1220, 1287
MslI CAYNNNNRTG 2 cut(s) 21, 72
MspA1I CMGCKG 1 cut(s) 887
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 1 cut(s) 1282
MvnI CGCG 1 cut(s) 261
NcoI CCATGG 1 cut(s) 53
NdeII GATC 2 cut(s) 49, 1363
NlaIII CATG 6 cut(s) 57, 321, 971, 1061, 1118, 1208
NlaIV GGNNCC 1 cut(s) 272
NsiI ATGCAT 2 cut(s) 982, 1129
NspI RCATGY 2 cut(s) 971, 1118
PaeR7I CTCGAG 1 cut(s) 759
PagI TCATGA 1 cut(s) 1204
PceI AGGCCT 1 cut(s) 469
PflMI CCANNNNNTGG 1 cut(s) 814
PkrI GCNGC 2 cut(s) 889, 1252
PleI GAGTC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 913
PshAI GACNNNNGTC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 805
PspXI VCTCGAGB 1 cut(s) 759
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 887
RseI CAYNNNNRTG 2 cut(s) 21, 72
SaqAI TTAA 8 cut(s) 81, 603, 768, 866, 972, 1040, 1220, 1287
SatI GCNGC 2 cut(s) 888, 1251
Sau3AI GATC 2 cut(s) 49, 1363
Sau96I GGNCC 1 cut(s) 805
SchI GAGTC 1 cut(s) 914
SduI GDGCHC 2 cut(s) 197, 760
SfaNI GCATC 7 cut(s) 417, 692, 967, 989, 1114, 1136, 1326
SfcI CTRYAG 2 cut(s) 39, 888
Sfr274I CTCGAG 1 cut(s) 759
SinI GGWCC 1 cut(s) 805
SlaI CTCGAG 1 cut(s) 759
SmiMI CAYNNNNRTG 2 cut(s) 21, 72
SmlI CTYRAG 2 cut(s) 80, 759
SmoI CTYRAG 2 cut(s) 80, 759
Sse9I AATT 8 cut(s) 176, 691, 765, 825, 962, 1109, 1222, 1352
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 3 cut(s) 161, 261, 708
SspMI CTAG 2 cut(s) 701, 1008
StuI AGGCCT 1 cut(s) 469
StyI CCWWGG 2 cut(s) 53, 729
TaaI ACNGT 3 cut(s) 315, 718, 955
TaiI ACGT 1 cut(s) 622
TaqI TCGA 1 cut(s) 760
TasI AATT 8 cut(s) 176, 691, 765, 825, 962, 1109, 1222, 1352
Tru1I TTAA 8 cut(s) 81, 603, 768, 866, 972, 1040, 1220, 1287
Tru9I TTAA 8 cut(s) 81, 603, 768, 866, 972, 1040, 1220, 1287
TscAI CASTG 2 cut(s) 514, 723
TseI GCWGC 2 cut(s) 887, 1250
TspRI CASTG 2 cut(s) 514, 723
Van91I CCANNNNNTGG 1 cut(s) 814
Vha464I CTTAAG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 805
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 3 cut(s) 176, 1222, 1352
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 2 cut(s) 971, 1118
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XhoI CTCGAG 1 cut(s) 759
XmiI GTMKAC 2 cut(s) 1014, 1161
XspI CTAG 2 cut(s) 701, 1008
Zsp2I ATGCAT 2 cut(s) 982, 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.