Rroxscaffold_1G00027220

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000683
Physical Location & Seq
Forward (+)
34313484 .. 34321720
8237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027220.1

Sequence Viewer

Length: 825 bp
ATGGACCTGCATAACCTACCATTTAAAGTTGGACAGGACATAGAATCGAGATCCTTTATGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGAAATTGGCTGGAGAAATGGTCAGCTGTCGTGTGCTTTGGAATATTATGACTTTCCAGATGAAAAAATAACTTGGGAGAAGATATATCAAACAAACCCTGCTGATGGTAAAAGGACAAGAAAGGGGAAGACATTGATGATCCGTCCTCCCTTTCCTCCTATCTATCGTGAAAGTAAAAGGCCTGATGTCAATACCATATTGGAAGTGATAGTTATTGTCAATGATGCCTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAACAGTGAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGATGTATGAGGCTTCTTACAAGGACCTGCGCTCATCCTTGGATTGGTCTCTAGAATATGGATGGACAGTACCTACACCCAAGGAGAGAGAAAATGGGCATCCTTGTGTTCAAGTAATTAAGCCTGATAATCAAGGAGACATTCCAAGCGTGGTGGCCCAAACTGTAGGTGAAGGAATAAGAGATGTACAGGCAATTGCTGGTGCAGATCAATCTTTAGCAGCAAAGGACCCAGCCACTGCAGAAACAAATATGGAGTCTGATGTAGCAGATAGCCTTTTTGGGAAGACGAGTTGCTCAGATAGTGGTTCAAGTTCGCATGTGAAAGATGCATTAAATAAAATGGGGGAACTGCAACTAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

274

Amino Acids

30.62

Weight (kDa)

5.04

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 85 3.2e-10 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 15, 495
AclWI GGATC 2 cut(s) 45, 232
AfaI GTAC 2 cut(s) 531, 648
AfiI CCNNNNNNNGG 3 cut(s) 203, 440, 504
AgsI TTSAA 3 cut(s) 455, 572, 771
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 513, 591
AlwI GGATC 2 cut(s) 45, 232
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 2 cut(s) 278, 615
ApeKI GCWGC 1 cut(s) 680
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 4 cut(s) 4, 484, 616, 688
AsuHPI GGTGA 2 cut(s) 455, 641
AvaII GGWCC 3 cut(s) 4, 484, 688
BbsI GAAGAC 2 cut(s) 233, 752
BbvI GCAGC 1 cut(s) 692
BccI CCATC 3 cut(s) 197, 356, 516
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 513, 591
BfaI CTAG 2 cut(s) 512, 818
BfmI CTRYAG 2 cut(s) 624, 699
BfuAI ACCTGC 2 cut(s) 15, 495
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 3 cut(s) 4, 484, 688
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 4 cut(s) 4, 484, 616, 688
BmiI GGNNCC 2 cut(s) 83, 690
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 3 cut(s) 313, 568, 778
BpiI GAAGAC 2 cut(s) 233, 752
BpmI CTGGAG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 498, 540
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 440, 504
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 498, 540
BseGI GGATG 5 cut(s) 367, 409, 494, 527, 559
BseLI CCNNNNNNNGG 3 cut(s) 203, 440, 504
BseMII CTCAG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 2 cut(s) 280, 617
BslI CCNNNNNNNGG 3 cut(s) 203, 440, 504
BsmAI GTCTC 2 cut(s) 513, 591
BsnI GGCC 2 cut(s) 280, 617
Bso31I GGTCTC 1 cut(s) 513
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 3 cut(s) 50, 237, 667
BspANI GGCC 2 cut(s) 280, 617
BspCNI CTCAG 1 cut(s) 770
BspLI GGNNCC 2 cut(s) 83, 690
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 2 cut(s) 15, 495
BspPI GGATC 2 cut(s) 45, 232
BspTNI GGTCTC 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 646
BssECI CCNNGG 2 cut(s) 498, 540
BssMI GATC 3 cut(s) 50, 237, 667
BssT1I CCWWGG 2 cut(s) 498, 540
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 412, 529, 625
BstAUI TGTACA 1 cut(s) 646
BstDEI CTNAG 1 cut(s) 757
BstF5I GGATG 5 cut(s) 367, 409, 494, 527, 559
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 3 cut(s) 53, 240, 670
BstMAI GTCTC 2 cut(s) 513, 591
BstMBI GATC 3 cut(s) 50, 237, 667
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 2 cut(s) 624, 699
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 2 cut(s) 233, 752
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 2 cut(s) 280, 617
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 5 cut(s) 367, 409, 494, 527, 559
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 417, 696
BveI ACCTGC 2 cut(s) 15, 495
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 4 cut(s) 4, 484, 616, 688
Csp6I GTAC 2 cut(s) 530, 647
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 1 cut(s) 779
CviJI RGCY 8 cut(s) 108, 124, 280, 473, 583, 617, 695, 735
CviKI_1 RGCY 8 cut(s) 108, 124, 280, 473, 583, 617, 695, 735
CviQI GTAC 2 cut(s) 530, 647
DdeI CTNAG 1 cut(s) 757
DpnI GATC 3 cut(s) 52, 239, 669
DpnII GATC 3 cut(s) 50, 237, 667
DraI TTTAAA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 498, 540
Eco147I AGGCCT 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 4, 484, 688
EcoO109I RGGNCCY 2 cut(s) 484, 688
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 498, 540
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 2 cut(s) 498, 540
FaeI CATG 1 cut(s) 782
FatI CATG 1 cut(s) 778
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 5 cut(s) 374, 416, 481, 534, 546
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 2 cut(s) 512, 818
GlaI GCGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 681
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 280, 617
HhaI GCGC 1 cut(s) 492
Hin1II CATG 1 cut(s) 782
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 2 cut(s) 44, 716
HphI GGTGA 2 cut(s) 455, 641
Hpy188I TCNGA 3 cut(s) 86, 721, 760
Hpy188III TCNNGA 5 cut(s) 48, 155, 266, 378, 512
HpyAV CCTTC 5 cut(s) 352, 409, 440, 449, 626
HpyCH4III ACNGT 3 cut(s) 412, 529, 625
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 10, 665, 701, 791, 814
HpyF3I CTNAG 1 cut(s) 757
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 1 cut(s) 782
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 3 cut(s) 50, 237, 667
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 3 cut(s) 313, 568, 778
MaeI CTAG 2 cut(s) 512, 818
MaeII ACGT 1 cut(s) 430
MalI GATC 3 cut(s) 52, 239, 669
MboI GATC 3 cut(s) 50, 237, 667
MboII GAAGA 3 cut(s) 190, 238, 757
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 50
MluCI AATT 3 cut(s) 102, 576, 654
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 4 cut(s) 255, 264, 444, 463
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 3 cut(s) 24, 579, 794
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 328
NdeII GATC 3 cut(s) 50, 237, 667
NlaIII CATG 1 cut(s) 782
NlaIV GGNNCC 2 cut(s) 83, 690
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 1 cut(s) 782
PceI AGGCCT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 682
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PpuMI RGGWCCY 2 cut(s) 484, 688
Psp5II RGGWCCY 2 cut(s) 484, 688
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 83, 690
PspPI GGNCC 4 cut(s) 4, 484, 616, 688
PspPPI RGGWCCY 2 cut(s) 484, 688
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 531, 648
RsaNI GTAC 2 cut(s) 530, 647
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 3 cut(s) 24, 579, 794
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 3 cut(s) 50, 237, 667
Sau96I GGNCC 4 cut(s) 4, 484, 616, 688
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 1 cut(s) 328
SetI ASST 9 cut(s) 9, 18, 67, 126, 420, 433, 489, 535, 631
SfaNI GCATC 3 cut(s) 313, 568, 778
SfcI CTRYAG 2 cut(s) 624, 699
SinI GGWCC 3 cut(s) 4, 484, 688
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 3 cut(s) 102, 576, 654
SseBI AGGCCT 1 cut(s) 280
SspI AATATT 1 cut(s) 143
SspMI CTAG 2 cut(s) 512, 818
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 498, 540
TaaI ACNGT 3 cut(s) 412, 529, 625
TaiI ACGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 47
TasI AATT 3 cut(s) 102, 576, 654
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 3 cut(s) 24, 579, 794
Tru9I TTAA 3 cut(s) 24, 579, 794
TscAI CASTG 2 cut(s) 417, 703
TseI GCWGC 1 cut(s) 680
TspDTI ATGAA 3 cut(s) 74, 174, 420
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 417, 703
VpaK11BI GGWCC 3 cut(s) 4, 484, 688
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 782
XspI CTAG 2 cut(s) 512, 818
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.