AT5G42670

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000683
Physical Location & Seq
Forward (+)
17107855 .. 17110761
2907 bp
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UTR
Exon/CDS
Intron
AT5G42670.1

Sequence Viewer

Length: 903 bp
ATGAAGCTGAGATTACAATTCTGTTTTGCTTTGAACCGAATACATGCTGCAGTTCACAGTTTTGACAAAAAAATGAGTGAAATGAATCTACCATTTGAAGTTGGTCAAACTGTAGAATTGAAATCTTTTGAATTGGGTTTTCGTGGTGCTTGGTTTCGTTGCAAGATTCTGAAGATATTTCAGAAAAGGAAAGCATTATTCTTTGATGTTGAGTATATTGATTATCCAGGAGAAGGGATACATTCAACAAAAGTATTTCAACAACTCGAAGGCGGAAACGAGAAATGCTTGATGATTCGACCTGTATATCCGCCACAATGTCGTGAAAATGAAGTCGATGGCGGTCTAGAAGAAGCTCTTGTTGTTCATGGTTCTTGGAAGGTTGGTGATTTGGTTGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACTGTTCTGGAAGTGAAAGAAAATGAATCAGTACAGATTGAATTGTTGGCTCCACCATATGGCGAAGGGAGTAGCTATGAGGCTCAGTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTGAAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAAAAGAGGCAATGTGCTAAGCTAATGAAACAGTTAAATGAAGATCAAGTGAGTGAAGCTGAATCTATGGAAGAAGAAAAGCAGAGAGGAGCCGAACCTAAAGAAGAAGAAAAGCAGAGACCGACAGAAAAGTTGAAAAGCGATGAAGCTCTTCAGTTGAACATCATGGATTCAGAGTCTATCGAAGCTGCTGTCTTGGACTTGGAAGAGATGATTGTTCGTTTCGAGTGGCTGAAAGACATCTTAACTCCTGATTCTTCGGAAAAAAATTCCTGGATATACGAGGATTATCATCCATCCTCCTCAAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

300

Amino Acids

34.81

Weight (kDa)

4.79

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 35 - 104 7.1e-10 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 488
AciI CCGC 3 cut(s) 273, 311, 342
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 2 cut(s) 191, 725
AfaI GTAC 2 cut(s) 462, 570
AfiI CCNNNNNNNGG 2 cut(s) 233, 488
AjnI CCWGG 2 cut(s) 226, 860
AluBI AGCT 7 cut(s) 7, 356, 504, 610, 647, 737, 776
AluI AGCT 7 cut(s) 7, 356, 504, 610, 647, 737, 776
Alw26I GTCTC 1 cut(s) 700
ApeKI GCWGC 2 cut(s) 47, 776
ApoI RAATTY 1 cut(s) 856
ArsI GACNNNNNNTTYG 2 cut(s) 765, 797
Asp700I GAANNNNTTC 1 cut(s) 738
AsuHPI GGTGA 1 cut(s) 398
BbvI GCAGC 2 cut(s) 34, 763
BccI CCATC 5 cut(s) 332, 541, 551, 578, 892
BciT130I CCWGG 2 cut(s) 228, 862
BciVI GTATCC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 2 cut(s) 48, 111
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 2 cut(s) 48, 777
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 2 cut(s) 49, 778
Bme1390I CCNGG 2 cut(s) 228, 862
BmiI GGNNCC 2 cut(s) 480, 679
BmrFI CCNGG 2 cut(s) 228, 862
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 877
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 700
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 488
Bse3DI GCAATG 1 cut(s) 605
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 2 cut(s) 228, 862
BseGI GGATG 3 cut(s) 589, 880, 884
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 2 cut(s) 233, 488
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 1 cut(s) 527
BseRI GAGGAG 2 cut(s) 690, 880
BseXI GCAGC 2 cut(s) 34, 763
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 2 cut(s) 233, 488
BsmAI GTCTC 1 cut(s) 700
BsmFI GGGAC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 700
Bsp143I GATC 1 cut(s) 631
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 3 cut(s) 273, 311, 342
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 480, 679
BspMAI CTGCAG 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 605
BssMI GATC 1 cut(s) 631
Bst2UI CCWGG 2 cut(s) 228, 862
Bst4CI ACNGT 5 cut(s) 59, 112, 433, 568, 621
Bst6I CTCTTC 2 cut(s) 744, 789
BstDEI CTNAG 5 cut(s) 8, 513, 519, 579, 606
BstF5I GGATG 3 cut(s) 589, 880, 884
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 1 cut(s) 631
BstNI CCWGG 2 cut(s) 228, 862
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 226, 860
BstSFI CTRYAG 2 cut(s) 48, 111
BstV1I GCAGC 2 cut(s) 34, 763
BsuI GTATCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 3 cut(s) 589, 880, 884
Csp6I GTAC 2 cut(s) 461, 569
CviAII CATG 3 cut(s) 44, 368, 754
CviQI GTAC 2 cut(s) 461, 569
DdeI CTNAG 5 cut(s) 8, 513, 519, 579, 606
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 744, 789
EarI CTCTTC 2 cut(s) 744, 789
EciI GGCGGA 2 cut(s) 288, 300
Eco31I GGTCTC 1 cut(s) 700
Eco57I CTGAAG 2 cut(s) 191, 725
EcoRII CCWGG 2 cut(s) 226, 860
FaeI CATG 3 cut(s) 47, 371, 757
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 442
FatI CATG 3 cut(s) 43, 367, 753
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 48, 777
FokI GGATG 3 cut(s) 596, 867, 871
Fsp4HI GCNGC 2 cut(s) 48, 777
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 48, 777
Hin1II CATG 3 cut(s) 47, 371, 757
HinfI GANTC 8 cut(s) 85, 166, 295, 455, 650, 758, 764, 842
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 171, 183, 763, 850
Hpy188III TCNNGA 5 cut(s) 323, 347, 437, 839, 894
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 227, 263, 373, 488
HpyCH4III ACNGT 5 cut(s) 59, 112, 433, 568, 621
HpyCH4V TGCA 2 cut(s) 50, 162
HpyF3I CTNAG 5 cut(s) 8, 513, 519, 579, 606
Hsp92II CATG 3 cut(s) 47, 371, 757
Kzo9I GATC 1 cut(s) 631
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 2 cut(s) 484, 677
LpnPI CCDG 8 cut(s) 213, 240, 315, 411, 422, 847, 852, 874
Lsp1109I GCAGC 2 cut(s) 34, 763
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 546
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MluCI AATT 5 cut(s) 17, 116, 131, 470, 856
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 6 cut(s) 502, 588, 668, 865, 898, 901
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 623, 833
MslI CAYNNNNRTG 1 cut(s) 541
MspR9I CCNGG 2 cut(s) 228, 862
MvaI CCWGG 2 cut(s) 228, 862
NdeI CATATG 1 cut(s) 487
NdeII GATC 1 cut(s) 631
NlaIII CATG 3 cut(s) 47, 371, 757
NlaIV GGNNCC 2 cut(s) 480, 679
NmuCI GTSAC 1 cut(s) 546
NspI RCATGY 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 7 cut(s) 85, 166, 295, 455, 650, 758, 842
PflMI CCANNNNNTGG 1 cut(s) 488
PfoI TCCNGGA 2 cut(s) 226, 860
PkrI GCNGC 2 cut(s) 49, 778
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Psp6I CCWGG 2 cut(s) 226, 860
PspGI CCWGG 2 cut(s) 226, 860
PspN4I GGNNCC 2 cut(s) 480, 679
PstI CTGCAG 1 cut(s) 52
RsaI GTAC 2 cut(s) 462, 570
RsaNI GTAC 2 cut(s) 461, 569
RseI CAYNNNNRTG 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 2 cut(s) 623, 833
SatI GCNGC 2 cut(s) 48, 777
Sau3AI GATC 1 cut(s) 631
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 228, 862
SfcI CTRYAG 2 cut(s) 48, 111
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 892
SmoI CTYRAG 1 cut(s) 892
Sse9I AATT 5 cut(s) 17, 116, 131, 470, 856
SsiI CCGC 3 cut(s) 273, 311, 342
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 226, 860
TaaI ACNGT 5 cut(s) 59, 112, 433, 568, 621
TaqI TCGA 5 cut(s) 267, 298, 336, 771, 813
TaqII GACCGA 1 cut(s) 724
TasI AATT 5 cut(s) 17, 116, 131, 470, 856
TatI WGTACW 1 cut(s) 460
TfiI GAWTC 7 cut(s) 85, 166, 295, 455, 650, 758, 842
Tru1I TTAA 2 cut(s) 623, 833
Tru9I TTAA 2 cut(s) 623, 833
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 2 cut(s) 47, 776
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 8 cut(s) 17, 98, 345, 356, 468, 629, 642, 747
Van91I CCANNNNNTGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 856
XbaI TCTAGA 1 cut(s) 346
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.