Rmu_sc0000068.1_g000012

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000068.1
OG0000683
Physical Location & Seq
Reverse (-)
54728 .. 64005
9278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000068.1_g000012.1.cds

Sequence Viewer

Length: 1266 bp
atggccctgcataacctaccatttaaagttggacaggacatagaatcgagatcctttctgaaaggttatcgtggtgcgtggttccgatgtaagataaaagatattggctggagaaatggtcagctgtcgtgtgctttggaatattatgactttccagatgaaaaaatagcttgggagaagatatatcaaaacaaccctgctgatggtaaaaggacaagaaaggggaagacattgatgatacgtcctccctttcctcctatctatcgtgaaagtaaaaggcctgatgtcaataccatattggaagtgatagttatagtcaatgatgcctggaaagtgggagatttagttgattggtggaaggatggttgttattggtctggaaaagtagcagaagtattaggggatgaaacagtgaaggttgagttgccacgtcctcctgtcggtgaaggagttgaaggagagatgtatgaggcttcttacaaggacctgcgctcatccttggattggtctctagaatatggatggacagttcctacacccaaggagagagaaaatgggcatccttgtgttcaagtaattaagcctgataatcaaggagacattccaagtgtggtggcccaaactgtaggtgatggaagaagagatgtacaggcaattgctggtgcagatcaatctttagcagcaaaggacttagcagcaaaggacccagccactgcagaaacaaatatggagtctgatgtagcagatagcctttttgggaagacgagttgctcagatagtggttcaagttcgcatgtgaaagatgcattaaataaaatggggggaactgcaactaggatagacatagttgataacgataggtccttgaagaagatgaaaactgacgaaggcataatattgaattcgatgagctctgatacattagaagctgcaattttggacttggaggaacttgtaaaccgggttaaatggatgaaaggtatgttggagactggaatgcctttgacaggtgccatgcacccccattggaaatttcttggaaatcataccgcgtccacgccaagtgaaggaaggcaggagaaaaccggacatgacaatacttcatctctgttcaatctagcaacttctagaattacacctcttctgatggattttgtgtatacctatagttggagattgatgatgctttatcatcctgttccagcccaagaaggcaaggagtggattgatgaggattatgctgatgttagttatgagagctggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

421

Amino Acids

47.27

Weight (kDa)

5.17

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 1160
AccII CGCG 1 cut(s) 1052
AciI CCGC 1 cut(s) 1050
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 901, 1031
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 6 cut(s) 203, 440, 504, 1007, 1067, 1170
AgsI TTSAA 6 cut(s) 455, 572, 786, 868, 901, 1114
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 5 cut(s) 124, 170, 912, 929, 1260
AluI AGCT 5 cut(s) 124, 170, 912, 929, 1260
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 3 cut(s) 513, 591, 983
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 3 cut(s) 3, 278, 615
ApeKI GCWGC 3 cut(s) 680, 695, 929
ApoI RAATTY 2 cut(s) 901, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 5 cut(s) 4, 484, 616, 703, 861
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 2 cut(s) 455, 641
AvaII GGWCC 3 cut(s) 484, 703, 861
BanI GGYRCC 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 914
BbsI GAAGAC 2 cut(s) 233, 767
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 3 cut(s) 692, 707, 916
BccI CCATC 5 cut(s) 197, 356, 516, 626, 1141
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 962
BcoDI GTCTC 3 cut(s) 513, 591, 983
BfaI CTAG 4 cut(s) 512, 834, 1118, 1128
BfmI CTRYAG 3 cut(s) 624, 714, 1165
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 3 cut(s) 681, 696, 930
BlsI GCNGC 3 cut(s) 682, 697, 931
Bme1390I CCNGG 2 cut(s) 328, 962
Bme18I GGWCC 3 cut(s) 484, 703, 861
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 5 cut(s) 4, 484, 616, 703, 861
BmiI GGNNCC 3 cut(s) 83, 705, 1012
BmrFI CCNGG 2 cut(s) 328, 962
BmsI GCATC 4 cut(s) 313, 568, 793, 1173
BpiI GAAGAC 2 cut(s) 233, 767
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 962
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 498, 540
BsaWI WCCGGW 1 cut(s) 1085
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 6 cut(s) 203, 440, 504, 1007, 1067, 1170
Bse1I ACTGG 1 cut(s) 997
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 498, 540
BseGI GGATG 7 cut(s) 367, 409, 494, 527, 559, 978, 1192
BseLI CCNNNNNNNGG 6 cut(s) 203, 440, 504, 1007, 1067, 1170
BseMII CTCAG 1 cut(s) 786
BseNI ACTGG 1 cut(s) 997
BseXI GCAGC 3 cut(s) 692, 707, 916
BseYI CCCAGC 1 cut(s) 706
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 1052
BshFI GGCC 3 cut(s) 5, 280, 617
BshNI GGYRCC 1 cut(s) 1010
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 2 cut(s) 961, 1086
BslI CCNNNNNNNGG 6 cut(s) 203, 440, 504, 1007, 1067, 1170
BsmAI GTCTC 3 cut(s) 513, 591, 983
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 3 cut(s) 5, 280, 617
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 914
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 50, 667
BspACI CCGC 1 cut(s) 1050
BspANI GGCC 3 cut(s) 5, 280, 617
BspCNI CTCAG 1 cut(s) 785
BspFNI CGCG 1 cut(s) 1052
BspLI GGNNCC 3 cut(s) 83, 705, 1012
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 1010
BspTNI GGTCTC 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 1 cut(s) 997
BssECI CCNNGG 2 cut(s) 498, 540
BssMI GATC 2 cut(s) 50, 667
BssNAI GTATAC 1 cut(s) 1161
BssT1I CCWWGG 2 cut(s) 498, 540
Bst1107I GTATAC 1 cut(s) 1161
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 412, 529, 625
Bst6I CTCTTC 2 cut(s) 634, 1146
BstAUI TGTACA 1 cut(s) 646
BstDEI CTNAG 2 cut(s) 691, 772
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 7 cut(s) 367, 409, 494, 527, 559, 978, 1192
BstFNI CGCG 1 cut(s) 1052
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 2 cut(s) 53, 670
BstMAI GTCTC 3 cut(s) 513, 591, 983
BstMBI GATC 2 cut(s) 50, 667
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 326, 960
BstSFI CTRYAG 3 cut(s) 624, 714, 1165
BstUI CGCG 1 cut(s) 1052
BstV1I GCAGC 3 cut(s) 692, 707, 916
BstV2I GAAGAC 2 cut(s) 233, 767
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 1161
BsuRI GGCC 3 cut(s) 5, 280, 617
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 7 cut(s) 367, 409, 494, 527, 559, 978, 1192
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 2 cut(s) 417, 711
BveI ACCTGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 5 cut(s) 4, 484, 616, 703, 861
CseI GACGC 1 cut(s) 1041
Csp6I GTAC 1 cut(s) 647
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 794, 1015, 1091
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 691, 772
DpnI GATC 2 cut(s) 52, 669
DpnII GATC 2 cut(s) 50, 667
DraI TTTAAA 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 634, 1146
EarI CTCTTC 2 cut(s) 634, 1146
Ecl136II GAGCTC 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 498, 540
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 914
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 484, 703, 861
Eco53kI GAGCTC 1 cut(s) 912
EcoICRI GAGCTC 1 cut(s) 912
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 3 cut(s) 484, 703, 861
EcoRI GAATTC 1 cut(s) 901
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 498, 540
EcoT22I ATGCAT 1 cut(s) 808
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 2 cut(s) 498, 540
FaeI CATG 3 cut(s) 797, 1018, 1094
FatI CATG 3 cut(s) 793, 1014, 1090
FblI GTMKAC 1 cut(s) 1160
Fnu4HI GCNGC 3 cut(s) 681, 696, 930
FokI GGATG 7 cut(s) 374, 416, 481, 534, 546, 985, 1179
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 3 cut(s) 681, 696, 930
FspBI CTAG 4 cut(s) 512, 834, 1118, 1128
GlaI GCGC 1 cut(s) 491
GluI GCNGC 3 cut(s) 681, 696, 930
GsaI CCCAGC 1 cut(s) 710
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 5, 280, 617
HapII CCGG 2 cut(s) 961, 1086
HgaI GACGC 1 cut(s) 1041
HhaI GCGC 1 cut(s) 492
Hin1II CATG 3 cut(s) 797, 1018, 1094
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 2 cut(s) 44, 731
HpaII CCGG 2 cut(s) 961, 1086
HphI GGTGA 2 cut(s) 455, 641
Hpy166II GTNNAC 3 cut(s) 958, 1056, 1161
Hpy188I TCNGA 6 cut(s) 60, 86, 736, 775, 916, 1146
Hpy188III TCNNGA 6 cut(s) 48, 155, 266, 378, 512, 1128
Hpy8I GTNNAC 3 cut(s) 958, 1056, 1161
HpyAV CCTTC 8 cut(s) 352, 409, 440, 449, 881, 1061, 1065, 1205
HpyCH4III ACNGT 3 cut(s) 412, 529, 625
HpyCH4IV ACGT 2 cut(s) 241, 430
HpyCH4V TGCA 7 cut(s) 10, 665, 716, 806, 830, 932, 1018
HpyF3I CTNAG 2 cut(s) 691, 772
HpySE526I ACGT 2 cut(s) 241, 430
Hsp92II CATG 3 cut(s) 797, 1018, 1094
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 50, 667
Lsp1109I GCAGC 3 cut(s) 692, 707, 916
LweI GCATC 4 cut(s) 313, 568, 793, 1173
MaeI CTAG 4 cut(s) 512, 834, 1118, 1128
MaeII ACGT 2 cut(s) 241, 430
MalI GATC 2 cut(s) 52, 669
MboI GATC 2 cut(s) 50, 667
MboII GAAGA 8 cut(s) 190, 238, 648, 651, 772, 880, 883, 1133
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 6 cut(s) 576, 654, 901, 933, 1031, 1131
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 3 cut(s) 10, 966, 1151
MnlI CCTC 7 cut(s) 255, 264, 444, 463, 940, 1149, 1225
Mph1103I ATGCAT 1 cut(s) 808
MseI TTAA 4 cut(s) 24, 579, 809, 966
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 2 cut(s) 961, 1086
MspR9I CCNGG 2 cut(s) 328, 962
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 1052
NciI CCSGG 1 cut(s) 962
NdeII GATC 2 cut(s) 50, 667
NlaIII CATG 3 cut(s) 797, 1018, 1094
NlaIV GGNNCC 3 cut(s) 83, 705, 1012
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 797
PceI AGGCCT 1 cut(s) 280
PctI GAATGC 1 cut(s) 1002
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 682, 697, 931
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PpuMI RGGWCCY 3 cut(s) 484, 703, 861
Psp124BI GAGCTC 1 cut(s) 914
Psp5II RGGWCCY 3 cut(s) 484, 703, 861
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 83, 705, 1012
PspPI GGNCC 5 cut(s) 4, 484, 616, 703, 861
PspPPI RGGWCCY 3 cut(s) 484, 703, 861
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 914
SaqAI TTAA 4 cut(s) 24, 579, 809, 966
SatI GCNGC 3 cut(s) 681, 696, 930
Sau3AI GATC 2 cut(s) 50, 667
Sau96I GGNCC 5 cut(s) 4, 484, 616, 703, 861
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 2 cut(s) 328, 962
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 4 cut(s) 313, 568, 793, 1173
SfcI CTRYAG 3 cut(s) 624, 714, 1165
SinI GGWCC 3 cut(s) 484, 703, 861
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 6 cut(s) 576, 654, 901, 933, 1031, 1131
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 1 cut(s) 1050
SspI AATATT 2 cut(s) 143, 897
SspMI CTAG 4 cut(s) 512, 834, 1118, 1128
SstI GAGCTC 1 cut(s) 914
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 326, 960
StyI CCWWGG 2 cut(s) 498, 540
TaaI ACNGT 3 cut(s) 412, 529, 625
TaiI ACGT 2 cut(s) 244, 433
TaqI TCGA 2 cut(s) 47, 905
TasI AATT 6 cut(s) 576, 654, 901, 933, 1031, 1131
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 4 cut(s) 24, 579, 809, 966
Tru9I TTAA 4 cut(s) 24, 579, 809, 966
TscAI CASTG 2 cut(s) 417, 718
TseI GCWGC 3 cut(s) 680, 695, 929
TspDTI ATGAA 5 cut(s) 174, 420, 890, 989, 1092
TspRI CASTG 2 cut(s) 417, 718
VpaK11BI GGWCC 3 cut(s) 484, 703, 861
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 901, 1031
XbaI TCTAGA 2 cut(s) 511, 1127
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 1160
XspI CTAG 4 cut(s) 512, 834, 1118, 1128
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.