Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000683

Physical Location & Seq

Genomic Coordinates Forward (+)

2327795 .. 2337046

Gene Structure 9252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G033500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGCGTGCATGACCTACCATTTATAGCTGGCCAAGAGGTAGAATCAAGATCATTTATTGCAGGTTTTCGTGGTGCATGGTTCCGATGTAAGATAATAGAGATTGCCTGGAGAATGGGTCAGATTTCAACCTCCTTGGAGTATTTTGACTTTCCGGGTGAAAAAATAACTTGGACAAAAATATATCAAGCAAGCCGTGCTTATAGTAAAAAGTCATCAAAGTCAAGAAAATTGCAATTGATGTTGCGGCCTTACTTTCCTCCTGTCTATCACGAAACTACAATGCCTGATGTCAATACAATAGCGGAAGTGGTAGTTCTTGTCGGTGATGTCTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAGAGTAACAGAAGTATTAGGGAATGAGAAAGTTAAGATTGAGTTGCCGCCTCCTCCTGTTGGCGAAGGATGTTCCTATGAAGTTTCTTGCAAGGACTTGCGCCCATCCTTGGATTGGTCTCCAGAAAATGGTTGGACAGTACCCACAACGGAGAGTGAAAATGGGCATCCTTGTGCTCGAATAATGAAGCCTTGTAATCAAGGGGGCATTTCAAGCTTGACAGCCCGTTCTGTAGGTGATGGAAGAAAGGGTGTCCAAGCCATTGCTGGAGCATCACATCCTTCTTCTCAAGTATCTGCTAGCTCATTGCAACCTCTTGATGGATTAGAGGAAATGGCAAAGCAACCGTTAGGTGCTATAACAGCAAAGTTGACACCCACACCAGAAACAAATGTTGATTCTGACATGGCAGATAGTGGGATTGGGAAGACGAGTTGCTCAGATAGTGTTTCAAGTTCGCATATTAAAAATGCATCAAAGGGGATGGGGAGATCTACAACTGGGAAAGACAGAGTTGACAACAATGGGTCCTTAAAGAAGTTGAAAACAGATCAAAGCATAGTTTTAAATTCAATGAGCTCTGATACATTAGAAGGTGCGATTTTAGACTTGGAGGAACTTGTAAACCGGGTTAAATGGATGAAGGGTGTCTTGGAGATTGGAATGCCTTTGACAAGTGCCATGCGCCCCACTTGGAAGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

365

Amino Acids

39.85

Weight (kDa)

6.96

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42670 AT5G52070 AT5G52070 AT5G52070 AT5G52070 AT5G52070 AT5G52070
fragaria_vesca	FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990
malus_domestica	MD16G1211400.v1.1
prunus_persica	Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1
pyrus_communis	pycom16g17720
rosa_chinensis	RchiOBHm_Chr4g0391121 RchiOBHm_Chr5g0051721 RchiOBHm_Chr7g0211841
rosa_laevigata	RLG00000002960 RLG00000009887 RLG00000034865
rosa_multiflora	Rmu_sc0000068.1_g000012 Rmu_sc0001824.1_g000045 Rmu_sc0005322.1_g000013 Rmu_sc0008872.1_g000005 Rmu_sc0009005.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027220 Rroxscaffold_3G00247380 Rroxscaffold_5G00336910
rosa_rugosa	Rorug03G0334300 Rorug05G0277200 Rorug05G0277300 Rorug05G0277300 Rorug05G0277300 Rorug05G0277400 Rorug05G0277500 Rorug07G0129300 Rorug07G0129400 Rorug07G0129500 Rorug07G0129500
rosa_samantha	Rh4AG034700 Rh4BG029900 Rh4CG038500 Rh4DG031900 Rh4DG032200 Rh5AG349400 Rh5BG361000 Rh5CG385600 Rh5DG375800 Rh7AG261900 Rh7BG255600 Rh7DG268400
rosa_wichuraiana	Rw4G001280 Rw4G002700 Rw5G033010 Rw7G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	515
AciI	CCGC	3 cut(s)	247, 305, 434
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	955
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	5 cut(s)	446, 496, 501, 515, 707
AgsI	TTSAA	5 cut(s)	129, 600, 840, 931, 960
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AluBI	AGCT	4 cut(s)	29, 603, 690, 966
AluI	AGCT	4 cut(s)	29, 603, 690, 966
Alw21I	GWGCWC	2 cut(s)	565, 968
Alw26I	GTCTC	1 cut(s)	510
AoxI	GGCC	2 cut(s)	31, 248
ApoI	RAATTY	1 cut(s)	955
AspLEI	GCGC	2 cut(s)	489, 1074
AspS9I	GGNCC	1 cut(s)	915
AsuC2I	CCSGG	2 cut(s)	156, 1016
AsuHPI	GGTGA	3 cut(s)	170, 338, 635
AsuNHI	GCTAGC	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	915
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	968
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	2 cut(s)	565, 968
BccI	CCATC	5 cut(s)	362, 499, 620, 701, 865
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	156, 1016
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	618
BfuAI	ACCTGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	2 cut(s)	248, 434
BlsI	GCNGC	2 cut(s)	249, 435
Bme1390I	CCNGG	3 cut(s)	109, 156, 1016
Bme18I	GGWCC	1 cut(s)	915
BmgT120I	GGNCC	1 cut(s)	915
BmiI	GGNNCC	2 cut(s)	83, 916
BmrFI	CCNGG	3 cut(s)	109, 156, 1016
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	3 cut(s)	562, 668, 869
BmtI	GCTAGC	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	3 cut(s)	130, 492, 675
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	156, 1016
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	135, 495
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 336, 366
Bsc4I	CCNNNNNNNGG	5 cut(s)	446, 496, 501, 515, 707
Bse1I	ACTGG	1 cut(s)	892
Bse3DI	GCAATG	2 cut(s)	648, 692
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	135, 495
BseGI	GGATG	7 cut(s)	373, 461, 491, 553, 664, 876, 1032
BseLI	CCNNNNNNNGG	5 cut(s)	446, 496, 501, 515, 707
BseMI	GCAATG	2 cut(s)	648, 692
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	1 cut(s)	892
BseRI	GAGGAG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	33, 250
BsiHKAI	GWGCWC	2 cut(s)	565, 968
BsiSI	CCGG	2 cut(s)	155, 1015
BslI	CCNNNNNNNGG	5 cut(s)	446, 496, 501, 515, 707
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	1056
BsnI	GGCC	2 cut(s)	33, 250
Bso31I	GGTCTC	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	565, 968
Bsp143I	GATC	3 cut(s)	50, 878, 937
BspACI	CCGC	3 cut(s)	247, 305, 434
BspANI	GGCC	2 cut(s)	33, 250
BspCNI	CTCAG	1 cut(s)	839
BspLI	GGNNCC	2 cut(s)	83, 916
BspMI	ACCTGC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	690
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	2 cut(s)	648, 692
BsrI	ACTGG	1 cut(s)	892
BssECI	CCNNGG	2 cut(s)	135, 495
BssMI	GATC	3 cut(s)	50, 878, 937
BssT1I	CCWWGG	2 cut(s)	135, 495
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	526, 735
Bst6I	CTCTTC	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	8, 31, 193, 688
BstDEI	CTNAG	1 cut(s)	826
BstF5I	GGATG	7 cut(s)	373, 461, 491, 553, 664, 876, 1032
BstHHI	GCGC	2 cut(s)	489, 1074
BstKTI	GATC	3 cut(s)	53, 881, 940
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	3 cut(s)	50, 878, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 600, 749
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	3 cut(s)	107, 154, 1014
BstSFI	CTRYAG	1 cut(s)	618
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	33, 250
BtsCI	GGATG	7 cut(s)	373, 461, 491, 553, 664, 876, 1032
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	4 cut(s)	8, 31, 193, 688
CfoI	GCGC	2 cut(s)	489, 1074
Cfr13I	GGNCC	1 cut(s)	915
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	4 cut(s)	11, 78, 793, 1069
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	1 cut(s)	826
DpnI	GATC	3 cut(s)	52, 880, 939
DpnII	GATC	3 cut(s)	50, 878, 937
DraI	TTTAAA	1 cut(s)	954
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	135, 495
Eco24I	GRGCYC	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	915
Eco53kI	GAGCTC	1 cut(s)	966
EcoICRI	GAGCTC	1 cut(s)	966
EcoO109I	RGGNCCY	1 cut(s)	915
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	135, 495
EcoT22I	ATGCAT	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	968
ErhI	CCWWGG	2 cut(s)	135, 495
FaeI	CATG	4 cut(s)	14, 81, 796, 1072
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 1022, 1054
FatI	CATG	4 cut(s)	10, 77, 792, 1068
Fnu4HI	GCNGC	2 cut(s)	248, 434
FokI	GGATG	7 cut(s)	380, 468, 478, 540, 651, 883, 1039
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	2 cut(s)	248, 434
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	2 cut(s)	488, 1073
GluI	GCNGC	2 cut(s)	248, 434
GsuI	CTGGAG	3 cut(s)	130, 492, 675
HaeIII	GGCC	2 cut(s)	33, 250
HapII	CCGG	2 cut(s)	155, 1015
HhaI	GCGC	2 cut(s)	489, 1074
Hin1II	CATG	4 cut(s)	14, 81, 796, 1072
Hin6I	GCGC	2 cut(s)	487, 1072
HinP1I	GCGC	2 cut(s)	487, 1072
HincII	GTYRAC	2 cut(s)	759, 904
HindII	GTYRAC	2 cut(s)	759, 904
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	2 cut(s)	44, 785
HpaII	CCGG	2 cut(s)	155, 1015
HphI	GGTGA	3 cut(s)	170, 338, 635
Hpy166II	GTNNAC	3 cut(s)	759, 904, 1012
Hpy188I	TCNGA	5 cut(s)	86, 123, 790, 829, 970
Hpy188III	TCNNGA	7 cut(s)	48, 225, 272, 334, 384, 509, 704
Hpy8I	GTNNAC	3 cut(s)	759, 904, 1012
HpyAV	CCTTC	5 cut(s)	358, 446, 678, 974, 1024
HpyCH4III	ACNGT	2 cut(s)	526, 735
HpyCH4V	TGCA	7 cut(s)	10, 62, 77, 235, 477, 697, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 600, 749
HpyF3I	CTNAG	1 cut(s)	826
Hsp92II	CATG	4 cut(s)	14, 81, 796, 1072
HspAI	GCGC	2 cut(s)	487, 1072
Kzo9I	GATC	3 cut(s)	50, 878, 937
LmnI	GCTCC	1 cut(s)	656
LweI	GCATC	3 cut(s)	562, 668, 869
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	52, 880, 939
MboI	GATC	3 cut(s)	50, 878, 937
MboII	GAAGA	4 cut(s)	399, 642, 663, 826
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	2 cut(s)	565, 968
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	3 cut(s)	230, 236, 955
MluNI	TGGCCA	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	8 cut(s)	31, 142, 270, 447, 450, 709, 711, 994
Mox20I	TGGCCA	1 cut(s)	33
Mph1103I	ATGCAT	1 cut(s)	862
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	5 cut(s)	420, 852, 920, 953, 1020
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	2 cut(s)	155, 1015
MspR9I	CCNGG	3 cut(s)	109, 156, 1016
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	1056
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	197, 600, 749
NciI	CCSGG	2 cut(s)	156, 1016
NdeII	GATC	3 cut(s)	50, 878, 937
NheI	GCTAGC	1 cut(s)	686
NlaIII	CATG	4 cut(s)	14, 81, 796, 1072
NlaIV	GGNNCC	2 cut(s)	83, 916
NsiI	ATGCAT	1 cut(s)	862
PctI	GAATGC	1 cut(s)	1056
PfeI	GAWTC	2 cut(s)	44, 785
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	249, 435
PpuMI	RGGWCCY	1 cut(s)	915
Psp124BI	GAGCTC	1 cut(s)	968
Psp5II	RGGWCCY	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	83, 916
PspPI	GGNCC	1 cut(s)	915
PspPPI	RGGWCCY	1 cut(s)	915
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	968
SaqAI	TTAA	5 cut(s)	420, 852, 920, 953, 1020
SatI	GCNGC	2 cut(s)	248, 434
Sau3AI	GATC	3 cut(s)	50, 878, 937
Sau96I	GGNCC	1 cut(s)	915
ScrFI	CCNGG	3 cut(s)	109, 156, 1016
SduI	GDGCHC	2 cut(s)	565, 968
SfaNI	GCATC	3 cut(s)	562, 668, 869
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	915
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	3 cut(s)	230, 236, 955
SsiI	CCGC	3 cut(s)	247, 305, 434
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	968
StyD4I	CCNGG	3 cut(s)	107, 154, 1014
StyI	CCWWGG	2 cut(s)	135, 495
TaaI	ACNGT	2 cut(s)	526, 735
TaqI	TCGA	1 cut(s)	565
TasI	AATT	3 cut(s)	230, 236, 955
TauI	GCSGC	2 cut(s)	250, 436
TfiI	GAWTC	2 cut(s)	44, 785
Tru1I	TTAA	5 cut(s)	420, 852, 920, 953, 1020
Tru9I	TTAA	5 cut(s)	420, 852, 920, 953, 1020
TspDTI	ATGAA	3 cut(s)	480, 587, 1043
TspGWI	ACGGA	1 cut(s)	551
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	915
XapI	RAATTY	1 cut(s)	955
XcmI	CCANNNNNNNNNTGG	3 cut(s)	498, 516, 650
XspI	CTAG	1 cut(s)	687
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.