RLG00000002960

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000683
Physical Location & Seq
Reverse (-)
42301184 .. 42304198
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002960

Sequence Viewer

Length: 999 bp
ATGTACAGGGGGCCTCAAATCTTCAGGGTTATGGCAACCCATGGGGATTTCGTCCATGGTCATATCAGAAAACTTGTGAAGGTGTGCAATAAACGATTTGTATTCCCTCTAGTCGTACCTCCTCTTCAAACCCTTGAACGCGGTTTTGAATATGGCAAAACGCTTTTCTTTCTCTTCCTTGCTCTTGTAGACGAGCTTGTACTTCACCATCCATTCCTTTCAGACTCGAGAAGAGTTGAACGAATCCTCTTGATCGTCGGATGCTGCCACTTGAGAAATTGTCGAGGTTCCGATCAACAATATGATGAACAGAACGAGAATGAAGAGGAGAATGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAGTCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGGTGATGGAAGAAGGGATGGTCCAATCTTTGGCCAAGCTATTGCTGGTGTCAAGCAACCTTTAACAGGAAAGGACACACCAACTGCAGAAACAAATATGGAGTCTGATGTGGCAGATAGTGGGTTTGAGAAGATGAGTTGCCCAGACACTGTTTCAAAATTGCATGTTAAACATGCATCAAATGAAATGGAGGCAACTACAACTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAAAAGTACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTGCTCGTATAGCGTTTCAAAATTGCATGTTGAAGAGGCATCAAATGAAATGGAGGCAACTACAACAAGGGTAGACATACTTGATAACACTATGCCCTTAAAGAGGAAGAAAACTCATGAAGACGTAGTGTTAAATTCAACGAACTCTGATACATTAGAAGCTGCACTTTTGGACTCGGAAGAACTTGTAAACTGGATTAAATGGATGAAGGGTATCTTGGGGATTGGATTACCTTTGACTGGTGCGACGCGACGCCGTTGGAAATTTCTTGGAGATCATTCCTTGTCCACCTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

333

Amino Acids

37.24

Weight (kDa)

7.19

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 409, 440
AccI GTMKAC 3 cut(s) 189, 621, 771
AccII CGCG 2 cut(s) 141, 949
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 2 cut(s) 832, 962
AcuI CTGAAG 1 cut(s) 7
AcyI GRCGYC 2 cut(s) 343, 952
AfaI GTAC 4 cut(s) 5, 117, 201, 664
AfiI CCNNNNNNNGG 5 cut(s) 409, 440, 476, 801, 938
AgsI TTSAA 8 cut(s) 128, 137, 149, 239, 567, 717, 731, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AluBI AGCT 4 cut(s) 196, 393, 449, 860
AluI AGCT 4 cut(s) 196, 393, 449, 860
Alw21I GWGCWC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 2 cut(s) 226, 354
AoxI GGCC 2 cut(s) 11, 442
ApeKI GCWGC 2 cut(s) 264, 860
ApoI RAATTY 2 cut(s) 832, 962
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspS9I GGNCC 3 cut(s) 11, 400, 431
AsuHPI GGTGA 2 cut(s) 197, 425
AvaI CYCGRG 2 cut(s) 226, 354
AvaII GGWCC 2 cut(s) 400, 431
BalI TGGCCA 1 cut(s) 444
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 251, 847
BccI CCATC 4 cut(s) 216, 391, 410, 422
BceAI ACGGC 1 cut(s) 939
BfaI CTAG 2 cut(s) 110, 615
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 2 cut(s) 265, 861
BlsI GCNGC 2 cut(s) 266, 862
BmcAI AGTACT 1 cut(s) 664
Bme18I GGWCC 2 cut(s) 400, 431
BmeT110I CYCGRG 2 cut(s) 226, 354
BmgT120I GGNCC 3 cut(s) 11, 400, 431
BmiI GGNNCC 2 cut(s) 12, 289
BmsI GCATC 3 cut(s) 251, 596, 746
BpiI GAAGAC 1 cut(s) 825
BpuEI CTTGAG 1 cut(s) 292
BsaHI GRCGYC 2 cut(s) 343, 952
BsaJI CCNNGG 2 cut(s) 40, 55
Bsc4I CCNNNNNNNGG 5 cut(s) 409, 440, 476, 801, 938
Bse1I ACTGG 2 cut(s) 896, 943
Bse3DI GCAATG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 40, 55
BseGI GGATG 4 cut(s) 208, 266, 433, 909
BseLI CCNNNNNNNGG 5 cut(s) 409, 440, 476, 801, 938
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 896, 943
BseRI GAGGAG 2 cut(s) 111, 341
BseXI GCAGC 2 cut(s) 251, 847
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 2 cut(s) 141, 949
BshFI GGCC 2 cut(s) 13, 444
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 2 cut(s) 226, 354
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 5 cut(s) 409, 440, 476, 801, 938
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 2 cut(s) 13, 444
BsoBI CYCGRG 2 cut(s) 226, 354
Bsp1286I GDGCHC 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 252, 292, 973
Bsp19I CCATGG 2 cut(s) 40, 55
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 13, 444
BspFNI CGCG 2 cut(s) 141, 949
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 12, 289
BspMAI CTGCAG 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 896, 943
BssECI CCNNGG 2 cut(s) 40, 55
BssMI GATC 3 cut(s) 252, 292, 973
BssNI GRCGYC 2 cut(s) 343, 952
BssT1I CCWWGG 2 cut(s) 40, 55
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 5 cut(s) 129, 179, 226, 318, 726
BstACI GRCGYC 2 cut(s) 343, 952
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 391
BstDSI CCRYGG 2 cut(s) 40, 55
BstENI CCTNNNNNAGG 2 cut(s) 474, 799
BstF5I GGATG 4 cut(s) 208, 266, 433, 909
BstFNI CGCG 2 cut(s) 141, 949
BstKTI GATC 3 cut(s) 255, 295, 976
BstMBI GATC 3 cut(s) 252, 292, 973
BstMWI GCNNNNNNNGC 1 cut(s) 708
BstNSI RCATGY 3 cut(s) 578, 587, 728
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 2 cut(s) 141, 949
BstV1I GCAGC 2 cut(s) 251, 847
BstV2I GAAGAC 1 cut(s) 825
BsuRI GGCC 2 cut(s) 13, 444
BtgI CCRYGG 2 cut(s) 40, 55
BtsCI GGATG 4 cut(s) 208, 266, 433, 909
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 560
CciI TCATGA 1 cut(s) 814
Cfr13I GGNCC 3 cut(s) 11, 400, 431
CseI GACGC 3 cut(s) 332, 955, 960
Csp6I GTAC 4 cut(s) 4, 116, 200, 663
CviAII CATG 7 cut(s) 41, 56, 575, 584, 668, 725, 815
CviJI RGCY 8 cut(s) 13, 196, 367, 393, 444, 449, 643, 860
CviKI_1 RGCY 8 cut(s) 13, 196, 367, 393, 444, 449, 643, 860
CviQI GTAC 4 cut(s) 4, 116, 200, 663
DpnI GATC 3 cut(s) 254, 294, 975
DpnII GATC 3 cut(s) 252, 292, 973
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 5 cut(s) 129, 179, 226, 318, 726
EarI CTCTTC 5 cut(s) 129, 179, 226, 318, 726
Eco130I CCWWGG 2 cut(s) 40, 55
Eco47I GGWCC 2 cut(s) 400, 431
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 2 cut(s) 226, 354
EcoNI CCTNNNNNAGG 2 cut(s) 474, 799
EcoO109I RGGNCCY 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 40, 55
EcoT22I ATGCAT 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 40, 55
FaeI CATG 7 cut(s) 44, 59, 578, 587, 671, 728, 818
FalI AAGNNNNNCTT 4 cut(s) 849, 881, 899, 931
FaqI GGGAC 1 cut(s) 395
FatI CATG 7 cut(s) 40, 55, 574, 583, 667, 724, 814
FblI GTMKAC 3 cut(s) 189, 621, 771
Fnu4HI GCNGC 2 cut(s) 265, 861
FokI GGATG 4 cut(s) 195, 273, 440, 916
Fsp4HI GCNGC 2 cut(s) 265, 861
FspBI CTAG 2 cut(s) 110, 615
GluI GCNGC 2 cut(s) 265, 861
HaeIII GGCC 2 cut(s) 13, 444
HgaI GACGC 3 cut(s) 332, 955, 960
Hin1I GRCGYC 2 cut(s) 343, 952
Hin1II CATG 7 cut(s) 44, 59, 578, 587, 671, 728, 818
HindIII AAGCTT 1 cut(s) 391
HinfI GANTC 4 cut(s) 224, 243, 512, 872
HphI GGTGA 2 cut(s) 197, 425
Hpy166II GTNNAC 5 cut(s) 190, 622, 772, 889, 987
Hpy188I TCNGA 7 cut(s) 68, 223, 260, 292, 517, 847, 877
Hpy188III TCNNGA 3 cut(s) 228, 250, 815
Hpy8I GTNNAC 5 cut(s) 190, 622, 772, 889, 987
Hpy99I CGWCG 3 cut(s) 260, 949, 954
HpyAV CCTTC 3 cut(s) 73, 417, 901
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 7 cut(s) 87, 389, 497, 574, 587, 724, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 708
HpySE526I ACGT 1 cut(s) 822
Hsp92I GRCGYC 2 cut(s) 343, 952
Hsp92II CATG 7 cut(s) 44, 59, 578, 587, 671, 728, 818
Kzo9I GATC 3 cut(s) 252, 292, 973
LpnPI CCDG 7 cut(s) 10, 381, 441, 462, 567, 877, 924
Lsp1109I GCAGC 2 cut(s) 251, 847
LweI GCATC 3 cut(s) 251, 596, 746
MaeI CTAG 2 cut(s) 110, 615
MaeII ACGT 1 cut(s) 822
MalI GATC 3 cut(s) 254, 294, 975
MboI GATC 3 cut(s) 252, 292, 973
MhlI GDGCHC 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 6 cut(s) 277, 360, 569, 719, 832, 962
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 3 cut(s) 218, 521, 866
MmeI TCCRAC 2 cut(s) 238, 938
Mox20I TGGCCA 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 589
MscI TGGCCA 1 cut(s) 444
MseI TTAA 7 cut(s) 363, 473, 579, 647, 797, 830, 897
Msp20I TGGCCA 1 cut(s) 444
MvnI CGCG 2 cut(s) 141, 949
MwoI GCNNNNNNNGC 1 cut(s) 708
NcoI CCATGG 2 cut(s) 40, 55
NdeII GATC 3 cut(s) 252, 292, 973
NlaIII CATG 7 cut(s) 44, 59, 578, 587, 671, 728, 818
NlaIV GGNNCC 2 cut(s) 12, 289
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 3 cut(s) 578, 587, 728
PaeR7I CTCGAG 2 cut(s) 226, 354
PagI TCATGA 1 cut(s) 814
PfeI GAWTC 1 cut(s) 243
PflMI CCANNNNNTGG 2 cut(s) 409, 440
PkrI GCNGC 2 cut(s) 266, 862
PleI GAGTC 3 cut(s) 218, 520, 866
PpsI GAGTC 3 cut(s) 218, 520, 866
PspN4I GGNNCC 2 cut(s) 12, 289
PspPI GGNCC 3 cut(s) 11, 400, 431
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 560
RsaI GTAC 4 cut(s) 5, 117, 201, 664
RsaNI GTAC 4 cut(s) 4, 116, 200, 663
SaqAI TTAA 7 cut(s) 363, 473, 579, 647, 797, 830, 897
SatI GCNGC 2 cut(s) 265, 861
Sau3AI GATC 3 cut(s) 252, 292, 973
Sau96I GGNCC 3 cut(s) 11, 400, 431
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 3 cut(s) 218, 521, 866
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 3 cut(s) 251, 596, 746
SfcI CTRYAG 1 cut(s) 495
Sfr274I CTCGAG 2 cut(s) 226, 354
SinI GGWCC 2 cut(s) 400, 431
SlaI CTCGAG 2 cut(s) 226, 354
SmlI CTYRAG 3 cut(s) 226, 271, 354
SmoI CTYRAG 3 cut(s) 226, 271, 354
Sse9I AATT 6 cut(s) 277, 360, 569, 719, 832, 962
SsiI CCGC 1 cut(s) 141
SspMI CTAG 2 cut(s) 110, 615
StyI CCWWGG 2 cut(s) 40, 55
TaaI ACNGT 1 cut(s) 562
TaiI ACGT 1 cut(s) 825
TaqI TCGA 3 cut(s) 227, 283, 355
TasI AATT 6 cut(s) 277, 360, 569, 719, 832, 962
TatI WGTACW 3 cut(s) 3, 199, 662
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 7 cut(s) 363, 473, 579, 647, 797, 830, 897
Tru9I TTAA 7 cut(s) 363, 473, 579, 647, 797, 830, 897
TscAI CASTG 1 cut(s) 565
TseI GCWGC 2 cut(s) 264, 860
TspDTI ATGAA 7 cut(s) 321, 336, 348, 609, 759, 831, 920
TspRI CASTG 1 cut(s) 565
Van91I CCANNNNNTGG 2 cut(s) 409, 440
VpaK11BI GGWCC 2 cut(s) 400, 431
XagI CCTNNNNNAGG 2 cut(s) 474, 799
XapI RAATTY 2 cut(s) 832, 962
XceI RCATGY 3 cut(s) 578, 587, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 2 cut(s) 226, 354
XmiI GTMKAC 3 cut(s) 189, 621, 771
XspI CTAG 2 cut(s) 110, 615
ZrmI AGTACT 1 cut(s) 664
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.