Rmu_sc0001824.1_g000045

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001824.1
OG0000683
Physical Location & Seq
Forward (+)
172594 .. 175200
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001824.1_g000045.1.cds

Sequence Viewer

Length: 627 bp
atgatgcgtcctccctttcctcccatgtataatgaaagtaaaaggcctgatgtcaatactatatcggaagtggtagttattgtcaatgatatctggaaggtgggagatttagttgattggtggaaggatgattgttattggtctggaaaagtagcagaagtattaggggatgaaaaagttaaggttgagttgccacgtcctcctgttggtgaaggagttgaaggagggacctatgaggcttcttgcaacgacttgcgagcatccctgaattggtctctagaaggcggttggacagtgcctacatccaaggagagtgaaaatgggcgtccttgtgctcgagtaattaagcctgataatcaagatgcatcaaatgaaatggaggcaactacaacaagggtagacataattgataacactaagcccgtaaagagaaagaaaactcatgaagacatagtgttaaattcaatgaactctgatacattagaagctgcacttttggacttagaggaacttgtaaaccggattaaatggatgaagggtatcttggagattggattacctttgactggtgcgatgagaccccgttggaaatttcctggagatcattcctcgtccaccccaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

5.04

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 399
AciI CCGC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 460, 590
AcyI GRCGYC 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 206, 270, 566
AgsI TTSAA 2 cut(s) 221, 465
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 595
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 1 cut(s) 488
AluI AGCT 1 cut(s) 488
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 279, 571
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 2 cut(s) 460, 590
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 597
BcoDI GTCTC 2 cut(s) 279, 571
BfaI CTAG 1 cut(s) 278
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 1 cut(s) 597
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 597
BmsI GCATC 3 cut(s) 269, 352, 374
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 279, 571
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 270, 566
Bse1I ACTGG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 5 cut(s) 133, 175, 260, 302, 537
BseLI CCNNNNNNNGG 3 cut(s) 206, 270, 566
BseNI ACTGG 1 cut(s) 571
BseXI GCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 520
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 3 cut(s) 206, 270, 566
BsmAI GTCTC 2 cut(s) 279, 571
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 2 cut(s) 279, 571
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 46
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 229
BspTNI GGTCTC 2 cut(s) 279, 571
BsrI ACTGG 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 417, 502
BstF5I GGATG 5 cut(s) 133, 175, 260, 302, 537
BstKTI GATC 1 cut(s) 604
BstMAI GTCTC 2 cut(s) 279, 571
BstMBI GATC 1 cut(s) 601
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 595
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 453
BsuRI GGCC 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 587
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 5 cut(s) 133, 175, 260, 302, 537
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 228
CseI GACGC 1 cut(s) 314
CviAII CATG 2 cut(s) 25, 443
CviJI RGCY 5 cut(s) 46, 239, 349, 421, 488
CviKI_1 RGCY 5 cut(s) 46, 239, 349, 421, 488
DdeI CTNAG 2 cut(s) 417, 502
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
Eco130I CCWWGG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 46
Eco31I GGTCTC 2 cut(s) 279, 571
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 28, 446
FaiI YATR 7 cut(s) 26, 30, 62, 234, 404, 444, 452
FalI AAGNNNNNCTT 4 cut(s) 477, 509, 527, 559
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 24, 442
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 5 cut(s) 140, 182, 247, 289, 544
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 520
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 2 cut(s) 28, 446
HpaII CCGG 1 cut(s) 520
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 3 cut(s) 400, 517, 615
Hpy188I TCNGA 2 cut(s) 67, 475
Hpy188III TCNNGA 5 cut(s) 94, 144, 278, 359, 443
Hpy8I GTNNAC 3 cut(s) 400, 517, 615
HpyAV CCTTC 6 cut(s) 91, 118, 206, 215, 275, 529
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 246, 365, 491
HpyF3I CTNAG 2 cut(s) 417, 502
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 2 cut(s) 28, 446
Kzo9I GATC 1 cut(s) 601
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 3 cut(s) 269, 352, 374
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 196
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MboII GAAGA 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 5 cut(s) 268, 342, 405, 460, 590
MmeI TCCRAC 2 cut(s) 269, 566
MnlI CCTC 8 cut(s) 21, 30, 210, 218, 229, 373, 499, 619
Mph1103I ATGCAT 1 cut(s) 367
MseI TTAA 4 cut(s) 180, 345, 458, 525
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 597
NdeII GATC 1 cut(s) 601
NlaIII CATG 2 cut(s) 28, 446
NlaIV GGNNCC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 336
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 228
PspPPI RGGWCCY 1 cut(s) 228
PspXI VCTCGAGB 1 cut(s) 336
SaqAI TTAA 4 cut(s) 180, 345, 458, 525
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 1 cut(s) 601
Sau96I GGNCC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 1 cut(s) 337
SetI ASST 6 cut(s) 102, 186, 199, 233, 490, 562
SfaNI GCATC 3 cut(s) 269, 352, 374
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 5 cut(s) 268, 342, 405, 460, 590
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 1 cut(s) 285
SspMI CTAG 1 cut(s) 278
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 595
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 337
TasI AATT 5 cut(s) 268, 342, 405, 460, 590
Tru1I TTAA 4 cut(s) 180, 345, 458, 525
Tru9I TTAA 4 cut(s) 180, 345, 458, 525
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 488
TspDTI ATGAA 6 cut(s) 48, 186, 387, 459, 482, 548
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 2 cut(s) 460, 590
XbaI TCTAGA 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.