Rw7G022330

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000683
Physical Location & Seq
Forward (+)
26287758 .. 26294071
6314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022330.1

Sequence Viewer

Length: 1098 bp
ATGGGCTCGTATAACCTACCATTCAAAGTTGGGGAAGACGTAGAATGGAGTTCATTCATGAAAGGTTATCGCGGTGCGTGGTTCCGATGTAAGATAAAAAATATTGGCTGGAGAAATGGTCAACTGTCATGTGCCTTGGAATATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATGTATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAGAAGATATTGATGATGCGTCCTCCCTTTCCTCCCATGTATAATGAAAGTAAAAGGCCTGATGTCAATACTATACCGGAAGTGGTAGTTATTGTTGAGTTGCCACTTCCTCCTGCTGGTGAAGGAGTTGAAGGAGAGACCTATGAGGCTTCTTGCAAGGACTTGCGTGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGAGAATGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAGTCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGGTGATGGAAGTAGGGATGTCCAAGCTATTGCTGGTGTCAAGCAACTTCTAACAGGAAAGGAGACACCAGCTGCAGAAACAAATATGGAGTCTGATGTGTTAGATAGTGGGTTTGAGAGAATGAGTTGCCCAGATACTGTTTCAAAATTGCATGTTAAAGATGCATCAAATGAAATGGAGGCAACTACAACTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAAAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTGCTCAGATAGCGTTTCAAAATTGCATGTTGAAGAGGCATCAAATGAAATGGAGGCAACTACAACAAGGGTAGACATACTTGATAACACTACGCCCTTAAAGAGGAAGAAAACTCATGAAGACATAGTGTTAAATTCAACGAATTCTGATACATTAGAAGCTGCACTTTTGGACTTGGAAGAACTTGTAAACCGGATTAAATGGATGAAGGGTATCTTGCGGATTGGATTACCTTTGACTGGTGCGATGCCACCCCGTTGGAAATTTCTTGGAGATCATTCCTTGTCCACCTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

365

Amino Acids

40.79

Weight (kDa)

6.08

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 85 4.4e-10 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 523
AccI GTMKAC 2 cut(s) 723, 870
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 72, 417, 1018
AcsI RAATTY 3 cut(s) 931, 940, 1061
AcyI GRCGYC 1 cut(s) 457
AfiI CCNNNNNNNGG 5 cut(s) 338, 402, 523, 900, 1037
AgsI TTSAA 6 cut(s) 25, 353, 669, 816, 830, 936
AluBI AGCT 4 cut(s) 507, 551, 596, 959
AluI AGCT 4 cut(s) 507, 551, 596, 959
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 353, 411, 581
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 596, 959
ApoI RAATTY 3 cut(s) 931, 940, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 2 cut(s) 353, 539
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 42, 924
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 2 cut(s) 583, 946
BccI CCATC 2 cut(s) 505, 524
BcoDI GTCTC 3 cut(s) 353, 411, 581
BfaI CTAG 2 cut(s) 410, 717
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 2 cut(s) 597, 960
BlsI GCNGC 2 cut(s) 598, 961
Bme18I GGWCC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 6 cut(s) 228, 401, 676, 698, 845, 1035
BpiI GAAGAC 2 cut(s) 42, 924
BpmI CTGGAG 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 457
BsaI GGTCTC 2 cut(s) 353, 411
BsaJI CCNNGG 2 cut(s) 135, 438
BsaWI WCCGGW 2 cut(s) 298, 990
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 402, 523, 900, 1037
Bse1I ACTGG 1 cut(s) 1042
Bse3DI GCAATG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 135, 438
BseGI GGATG 4 cut(s) 392, 434, 547, 1008
BseLI CCNNNNNNNGG 5 cut(s) 338, 402, 523, 900, 1037
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 1 cut(s) 1042
BseXI GCAGC 2 cut(s) 583, 946
BsgI GTGCAG 1 cut(s) 945
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 2 cut(s) 299, 991
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 5 cut(s) 338, 402, 523, 900, 1037
BsmAI GTCTC 3 cut(s) 353, 411, 581
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 2 cut(s) 353, 411
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 8, 469
Bsp143I GATC 1 cut(s) 1072
BspACI CCGC 3 cut(s) 72, 417, 1018
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 815
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 2 cut(s) 57, 913
BspLI GGNNCC 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 601
BspTNI GGTCTC 2 cut(s) 353, 411
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 1042
BssECI CCNNGG 2 cut(s) 135, 438
BssMI GATC 1 cut(s) 1072
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 2 cut(s) 135, 438
Bst4CI ACNGT 3 cut(s) 126, 427, 664
Bst6I CTCTTC 1 cut(s) 825
BstACI GRCGYC 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 390, 505
BstDEI CTNAG 1 cut(s) 802
BstENI CCTNNNNNAGG 1 cut(s) 898
BstF5I GGATG 4 cut(s) 392, 434, 547, 1008
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 1 cut(s) 1075
BstMAI GTCTC 3 cut(s) 353, 411, 581
BstMBI GATC 1 cut(s) 1072
BstMWI GCNNNNNNNGC 1 cut(s) 807
BstNSI RCATGY 2 cut(s) 680, 827
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 583, 946
BstV2I GAAGAC 2 cut(s) 42, 924
BstXI CCANNNNNNTGG 1 cut(s) 1056
BsuRI GGCC 1 cut(s) 280
BtgZI GCGATG 1 cut(s) 1058
BtsCI GGATG 4 cut(s) 392, 434, 547, 1008
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 390, 505
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 2 cut(s) 57, 913
Cfr13I GGNCC 1 cut(s) 514
CseI GACGC 2 cut(s) 230, 446
CviAII CATG 7 cut(s) 58, 129, 259, 677, 767, 824, 914
DdeI CTNAG 1 cut(s) 802
DpnI GATC 1 cut(s) 1074
DpnII GATC 1 cut(s) 1072
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
Eco130I CCWWGG 2 cut(s) 135, 438
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 353, 411
Eco47I GGWCC 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 898
EcoRI GAATTC 1 cut(s) 940
EcoT14I CCWWGG 2 cut(s) 135, 438
EcoT22I ATGCAT 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 135, 438
FaeI CATG 7 cut(s) 61, 132, 262, 680, 770, 827, 917
FalI AAGNNNNNCTT 4 cut(s) 948, 980, 998, 1030
FaqI GGGAC 1 cut(s) 509
FatI CATG 7 cut(s) 57, 128, 258, 676, 766, 823, 913
FblI GTMKAC 2 cut(s) 723, 870
Fnu4HI GCNGC 2 cut(s) 597, 960
FokI GGATG 4 cut(s) 379, 421, 554, 1015
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 597, 960
FspBI CTAG 2 cut(s) 410, 717
GluI GCNGC 2 cut(s) 597, 960
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 280
HapII CCGG 2 cut(s) 299, 991
HgaI GACGC 2 cut(s) 230, 446
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 7 cut(s) 61, 132, 262, 680, 770, 827, 917
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 1 cut(s) 614
HpaII CCGG 2 cut(s) 299, 991
HphI GGTGA 2 cut(s) 353, 539
Hpy166II GTNNAC 5 cut(s) 122, 724, 871, 988, 1086
Hpy188I TCNGA 4 cut(s) 86, 619, 805, 946
Hpy188III TCNNGA 4 cut(s) 58, 155, 410, 914
Hpy8I GTNNAC 5 cut(s) 122, 724, 871, 988, 1086
HpyAV CCTTC 4 cut(s) 338, 347, 407, 1000
HpyCH4III ACNGT 3 cut(s) 126, 427, 664
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 8 cut(s) 378, 392, 503, 599, 676, 689, 823, 962
HpyF10VI GCNNNNNNNGC 1 cut(s) 807
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 7 cut(s) 61, 132, 262, 680, 770, 827, 917
Kzo9I GATC 1 cut(s) 1072
Lsp1109I GCAGC 2 cut(s) 583, 946
LweI GCATC 6 cut(s) 228, 401, 676, 698, 845, 1035
MaeI CTAG 2 cut(s) 410, 717
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 1074
MboI GATC 1 cut(s) 1072
MboII GAAGA 7 cut(s) 47, 238, 802, 842, 916, 929, 989
MhlI GDGCHC 2 cut(s) 8, 469
MluCI AATT 7 cut(s) 400, 474, 671, 818, 931, 940, 1061
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 401, 1037
MnlI CCTC 8 cut(s) 255, 264, 342, 361, 697, 826, 844, 894
Mph1103I ATGCAT 1 cut(s) 691
MseI TTAA 6 cut(s) 477, 681, 749, 896, 929, 996
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 2 cut(s) 299, 991
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 807
NdeII GATC 1 cut(s) 1072
NlaIII CATG 7 cut(s) 61, 132, 262, 680, 770, 827, 917
NlaIV GGNNCC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 2 cut(s) 680, 827
PaeR7I CTCGAG 1 cut(s) 468
PagI TCATGA 2 cut(s) 57, 913
PceI AGGCCT 1 cut(s) 280
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 2 cut(s) 598, 961
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 514
PspXI VCTCGAGB 1 cut(s) 468
PstI CTGCAG 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 596
SaqAI TTAA 6 cut(s) 477, 681, 749, 896, 929, 996
SatI GCNGC 2 cut(s) 597, 960
Sau3AI GATC 1 cut(s) 1072
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 623
SduI GDGCHC 2 cut(s) 8, 469
SfaNI GCATC 6 cut(s) 228, 401, 676, 698, 845, 1035
SfcI CTRYAG 1 cut(s) 597
Sfr274I CTCGAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 514
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 7 cut(s) 400, 474, 671, 818, 931, 940, 1061
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 3 cut(s) 72, 417, 1018
SspI AATATT 2 cut(s) 103, 143
SspMI CTAG 2 cut(s) 410, 717
StuI AGGCCT 1 cut(s) 280
StyI CCWWGG 2 cut(s) 135, 438
TaaI ACNGT 3 cut(s) 126, 427, 664
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 469
TasI AATT 7 cut(s) 400, 474, 671, 818, 931, 940, 1061
Tru1I TTAA 6 cut(s) 477, 681, 749, 896, 929, 996
Tru9I TTAA 6 cut(s) 477, 681, 749, 896, 929, 996
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 596, 959
TspRI CASTG 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 514
XagI CCTNNNNNAGG 1 cut(s) 898
XapI RAATTY 3 cut(s) 931, 940, 1061
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 2 cut(s) 680, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XhoI CTCGAG 1 cut(s) 468
XmiI GTMKAC 2 cut(s) 723, 870
XspI CTAG 2 cut(s) 410, 717
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.