Rw4G002700

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000683
Physical Location & Seq
Forward (+)
5332729 .. 5338384
5656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002700.1

Sequence Viewer

Length: 948 bp
ATGGGCTCGCATAACCTACCATTCAAAGTTGGGGAAGACATAGAATGGAGTTCATTTATGAAAGGTTATCGCGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAACTGTCATGTGCCTTATTCTATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATATATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAGAAGATATTGATGATGCGTCCTCCCTTTCCTCCTATGTATAATGAAAGTAAAATGCCTGATGTCAATACTATATCGGAAGTGGTAGTTATTGTCAGTGATGTCTGGAAGGTGGGAGATTTAGTTGATTGGTGGAAGGATGATTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAAAAGTTAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGACCTATGAAGCTTCTTGCAACGACTTGCGAGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGAGAGTGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAATCAAGCCTTAAAGAGAAAGAAAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTTCTCAGATCGCATTTCAAAATTGCATGTTGAAGATGCATCAAATGAAATGGAGGCAACTGCAACAAGGGTAGACATAATTGATAACACTAAGCCTGTAAAGAGAAAGAAAACTCATGAAGACATAGTGTTAAATTCAATGAACTCTGATACATTAGAAGCTGCACTTTTGGACTTAGAGGAACTTGTAAACCGGATTAAATGGATGAAGGGTATCTTGGAGATTGGATTACCTTTGACTGGTGCGATGCGACCCCGTTGGAAATTTCTTGGAGATCATTCCTCATCCACCCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

315

Amino Acids

35.91

Weight (kDa)

6.97

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 85 1.2e-08 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 720
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 72, 519
AcsI RAATTY 2 cut(s) 781, 911
AcyI GRCGYC 1 cut(s) 559
AfiI CCNNNNNNNGG 3 cut(s) 440, 504, 887
AgsI TTSAA 5 cut(s) 25, 455, 666, 680, 786
AjiI CACGTC 1 cut(s) 431
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 2 cut(s) 473, 809
AluI AGCT 2 cut(s) 473, 809
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 2 cut(s) 455, 513
Ama87I CYCGRG 1 cut(s) 570
ApeKI GCWGC 1 cut(s) 809
ApoI RAATTY 2 cut(s) 781, 911
AsuHPI GGTGA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 570
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 42, 774
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 455, 513
BfaI CTAG 1 cut(s) 512
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
BmeT110I CYCGRG 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 5 cut(s) 228, 503, 673, 695, 885
BpiI GAAGAC 2 cut(s) 42, 774
BpmI CTGGAG 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 559
BsaI GGTCTC 2 cut(s) 455, 513
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 1 cut(s) 840
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 504, 887
Bse1I ACTGG 1 cut(s) 892
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 6 cut(s) 367, 409, 494, 536, 858, 932
BseLI CCNNNNNNNGG 3 cut(s) 440, 504, 887
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 1 cut(s) 892
BseXI GCAGC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 1 cut(s) 841
BslI CCNNNNNNNGG 3 cut(s) 440, 504, 887
BsmAI GTCTC 2 cut(s) 455, 513
Bso31I GGTCTC 2 cut(s) 455, 513
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 8, 571
Bsp143I GATC 2 cut(s) 655, 922
BspACI CCGC 2 cut(s) 72, 519
BspCNI CTCAG 1 cut(s) 665
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 1 cut(s) 83
BspTNI GGTCTC 2 cut(s) 455, 513
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 2 cut(s) 655, 922
BssNI GRCGYC 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 126, 529
BstACI GRCGYC 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 8, 492
BstDEI CTNAG 3 cut(s) 652, 738, 823
BstF5I GGATG 6 cut(s) 367, 409, 494, 536, 858, 932
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 2 cut(s) 658, 925
BstMAI GTCTC 2 cut(s) 455, 513
BstMBI GATC 2 cut(s) 655, 922
BstNSI RCATGY 1 cut(s) 677
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 796
BstV2I GAAGAC 2 cut(s) 42, 774
BtgZI GCGATG 1 cut(s) 908
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 6 cut(s) 367, 409, 494, 536, 858, 932
BtsIMutI CAGTG 2 cut(s) 325, 534
Cac8I GCNNGC 2 cut(s) 8, 492
CciI TCATGA 1 cut(s) 763
CseI GACGC 2 cut(s) 230, 548
CviAII CATG 4 cut(s) 129, 617, 674, 764
CviJI RGCY 7 cut(s) 6, 108, 473, 583, 596, 742, 809
CviKI_1 RGCY 7 cut(s) 6, 108, 473, 583, 596, 742, 809
DdeI CTNAG 3 cut(s) 652, 738, 823
DpnI GATC 2 cut(s) 657, 924
DpnII GATC 2 cut(s) 655, 922
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 455, 513
Eco88I CYCGRG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 688
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 4 cut(s) 132, 620, 677, 767
FalI AAGNNNNNCTT 4 cut(s) 798, 830, 848, 880
FatI CATG 4 cut(s) 128, 616, 673, 763
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 6 cut(s) 374, 416, 481, 523, 865, 919
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 810
FspBI CTAG 1 cut(s) 512
GluI GCNGC 1 cut(s) 810
GsuI CTGGAG 1 cut(s) 130
HapII CCGG 1 cut(s) 841
HgaI GACGC 2 cut(s) 230, 548
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 4 cut(s) 132, 620, 677, 767
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 471
HpaII CCGG 1 cut(s) 841
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 3 cut(s) 122, 721, 838
Hpy188I TCNGA 4 cut(s) 86, 301, 655, 796
Hpy188III TCNNGA 5 cut(s) 155, 328, 378, 512, 764
Hpy8I GTNNAC 3 cut(s) 122, 721, 838
HpyAV CCTTC 6 cut(s) 325, 352, 440, 449, 509, 850
HpyCH4III ACNGT 2 cut(s) 126, 529
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 480, 673, 686, 710, 812
HpyF3I CTNAG 3 cut(s) 652, 738, 823
HpySE526I ACGT 1 cut(s) 430
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 4 cut(s) 132, 620, 677, 767
Kzo9I GATC 2 cut(s) 655, 922
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 5 cut(s) 228, 503, 673, 695, 885
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 430
MalI GATC 2 cut(s) 657, 924
MboI GATC 2 cut(s) 655, 922
MboII GAAGA 5 cut(s) 47, 238, 652, 692, 779
MhlI GDGCHC 2 cut(s) 8, 571
MluCI AATT 6 cut(s) 502, 576, 668, 726, 781, 911
MmeI TCCRAC 2 cut(s) 503, 887
MnlI CCTC 6 cut(s) 255, 264, 444, 694, 820, 940
Mph1103I ATGCAT 1 cut(s) 688
MseI TTAA 5 cut(s) 414, 579, 599, 779, 846
MspI CCGG 1 cut(s) 841
MvnI CGCG 1 cut(s) 72
NdeII GATC 2 cut(s) 655, 922
NlaIII CATG 4 cut(s) 132, 620, 677, 767
NlaIV GGNNCC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 570
PagI TCATGA 1 cut(s) 763
PkrI GCNGC 1 cut(s) 811
PspN4I GGNNCC 1 cut(s) 83
PspXI VCTCGAGB 1 cut(s) 570
SaqAI TTAA 5 cut(s) 414, 579, 599, 779, 846
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 2 cut(s) 655, 922
SduI GDGCHC 2 cut(s) 8, 571
SetI ASST 9 cut(s) 18, 67, 336, 420, 433, 467, 475, 811, 883
SfaNI GCATC 5 cut(s) 228, 503, 673, 695, 885
Sfr274I CTCGAG 1 cut(s) 570
SlaI CTCGAG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
Sse9I AATT 6 cut(s) 502, 576, 668, 726, 781, 911
SsiI CCGC 2 cut(s) 72, 519
SspMI CTAG 1 cut(s) 512
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 126, 529
TaiI ACGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 571
TasI AATT 6 cut(s) 502, 576, 668, 726, 781, 911
Tru1I TTAA 5 cut(s) 414, 579, 599, 779, 846
Tru9I TTAA 5 cut(s) 414, 579, 599, 779, 846
TscAI CASTG 2 cut(s) 325, 534
TseI GCWGC 1 cut(s) 809
TspRI CASTG 2 cut(s) 325, 534
XapI RAATTY 2 cut(s) 781, 911
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.