MD16G1211400.v1.1

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000683
Physical Location & Seq
Forward (+)
19999909 .. 20015952
16044 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1211400.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGGCATGAATGGCCTACCTTTTGAAGCTGGCCAAGAGGTTGAATGCAGGTCGTTTATCCCGGGTTATCGCGGTGCGTGGTTCCGATGTAAGATAAAGGAATACGGCTTGAGACAAGCTCGATTGTCGTCTAGCATGGAGTATATTGACTTTCCTGATGAAAAAGTGAAGTGGACAAGAGTATATCAAAAAATCCCTGGTCTTAGTAAGAAGTCAAAGTCATTAAAAGTGCAATTGATGTTGCGTCCTCGGTTTCCTCCCATCTATAATAGAAGTACAATACCTGATGCCAATACCAGAGCAGAAGTGGTGGTTATTGTCAACGATGATTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCCGGAAGAATAACAGAAATATTGGGGAATGAGAGCCTTAAGTTTGATTTGCCACCTCCTCCAGATGGTGAAGGATATTCCTATGAAGTTTCTTCCAAGGAATTGCGCCCATCCTTGGATTGGTCTCCAGAGAATGGTTGGACAGTACCCACACCCATGGAGAGTGAATGTGTGCATCCTTGTGCTCGAGTAATGAAGCCTGGGGAAGTTCCAAGCTGTACATTCCATGCTGTGGGTGATGAAAATAGGTGTCTCCAAGCTTTTGCTACAGCATCACATCGTTCACCTTCTTCTCACGTGTCTGCTAGCTCATTACAACCTCCCAAAGGATTAGAGGAAATGGCAAAGCAACCTCTAGGCACTATAAAAACTATGGAGAAACCACCACCAGATGTAAATGTTGGATCCGATATGGCAGATAGTGGGATTGCGAAGGCAAGTTGCTCAGATAGTGTTTCAAGTTCGCATGTTAAAAGTGAGCCAAAGGGGATGCGAAGAACTGCAGCCGGAGAAGATAGAGTTGACAACAATGGGTCGTTGAAGAAAATGAAAACGGATAGGAACATAGTTTTAAATTCGACGAAGTCTGATACATTAGAAGCTGCGATTCTAGACTTGGAGGAACTTGTAAGCCGGGTTAAATGGATGAAGGGCGTCTTAGAGATTGGAATGCCTTGGACAAGTGCCACGCGCCCCACTTGGAAGTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

364

Amino Acids

40.5

Weight (kDa)

8.02

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 86 5e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccB7I CCANNNNNTGG 2 cut(s) 512, 610
AccII CGCG 2 cut(s) 72, 1069
AccIII TCCGGA 1 cut(s) 380
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 777, 790
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 952
AcvI CACGTG 1 cut(s) 676
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 3 cut(s) 277, 525, 598
AfiI CCNNNNNNNGG 6 cut(s) 443, 493, 498, 512, 610, 704
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 4 cut(s) 26, 44, 837, 919
AjnI CCWGG 2 cut(s) 196, 577
AluBI AGCT 6 cut(s) 29, 119, 594, 638, 687, 980
AluI AGCT 6 cut(s) 29, 119, 594, 638, 687, 980
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 3 cut(s) 106, 507, 635
AlwI GGATC 2 cut(s) 777, 790
Ama87I CYCGRG 2 cut(s) 61, 564
Aor13HI TCCGGA 1 cut(s) 380
AoxI GGCC 2 cut(s) 13, 31
ApeKI GCWGC 2 cut(s) 881, 980
ApoI RAATTY 1 cut(s) 952
AspLEI GCGC 2 cut(s) 486, 1071
AspS9I GGNCC 1 cut(s) 378
AsuC2I CCSGG 3 cut(s) 62, 63, 1013
AsuHPI GGTGA 3 cut(s) 458, 626, 654
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 2 cut(s) 61, 564
AvaII GGWCC 1 cut(s) 378
BalI TGGCCA 1 cut(s) 33
BamHI GGATCC 1 cut(s) 782
BbrPI CACGTG 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 893, 967
BccI CCATC 4 cut(s) 269, 359, 437, 496
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 198, 579
BcnI CCSGG 3 cut(s) 62, 63, 1013
BcoDI GTCTC 3 cut(s) 106, 507, 635
BfaI CTAG 4 cut(s) 132, 684, 734, 989
BfmI CTRYAG 2 cut(s) 645, 879
BfrI CTTAAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 2 cut(s) 882, 981
BlsI GCNGC 2 cut(s) 883, 982
Bme1390I CCNGG 5 cut(s) 62, 63, 198, 579, 1013
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 2 cut(s) 61, 564
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 83, 784
BmrFI CCNGG 5 cut(s) 62, 63, 198, 579, 1013
BmsI GCATC 4 cut(s) 277, 562, 659, 858
BmtI GCTAGC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 2 cut(s) 423, 489
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 3 cut(s) 62, 63, 1013
BsaAI YACGTR 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 1032
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 8 cut(s) 61, 196, 248, 474, 492, 534, 578, 1052
BsaWI WCCGGW 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 6 cut(s) 443, 493, 498, 512, 610, 704
BseAI TCCGGA 1 cut(s) 380
BseBI CCWGG 2 cut(s) 198, 579
BseDI CCNNGG 8 cut(s) 61, 196, 248, 474, 492, 534, 578, 1052
BseGI GGATG 5 cut(s) 370, 488, 553, 873, 1029
BseLI CCNNNNNNNGG 6 cut(s) 443, 493, 498, 512, 610, 704
BseMII CTCAG 1 cut(s) 837
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 893, 967
Bsh1236I CGCG 2 cut(s) 72, 1069
BshFI GGCC 2 cut(s) 15, 33
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 2 cut(s) 61, 564
BsiSI CCGG 4 cut(s) 62, 381, 885, 1012
BslI CCNNNNNNNGG 6 cut(s) 443, 493, 498, 512, 610, 704
BsmAI GTCTC 3 cut(s) 106, 507, 635
BsmI GAATGC 2 cut(s) 50, 1053
BsnI GGCC 2 cut(s) 15, 33
Bso31I GGTCTC 1 cut(s) 507
BsoBI CYCGRG 2 cut(s) 61, 564
Bsp1286I GDGCHC 1 cut(s) 565
Bsp13I TCCGGA 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 1 cut(s) 782
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 72
BspANI GGCC 2 cut(s) 15, 33
BspCNI CTCAG 1 cut(s) 836
BspEI TCCGGA 1 cut(s) 380
BspFNI CGCG 2 cut(s) 72, 1069
BspLI GGNNCC 2 cut(s) 83, 784
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 2 cut(s) 777, 790
BspTI CTTAAG 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 596
BssECI CCNNGG 8 cut(s) 61, 196, 248, 474, 492, 534, 578, 1052
BssMI GATC 1 cut(s) 782
BssNI GRCGYC 1 cut(s) 1032
BssT1I CCWWGG 4 cut(s) 474, 492, 534, 1052
Bst2UI CCWGG 2 cut(s) 198, 579
Bst4CI ACNGT 1 cut(s) 523
BstACI GRCGYC 1 cut(s) 1032
BstAFI CTTAAG 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 31, 685
BstDEI CTNAG 3 cut(s) 203, 823, 1036
BstDSI CCRYGG 1 cut(s) 534
BstENI CCTNNNNNAGG 1 cut(s) 702
BstF5I GGATG 5 cut(s) 370, 488, 553, 873, 1029
BstFNI CGCG 2 cut(s) 72, 1069
BstHHI GCGC 2 cut(s) 486, 1071
BstKTI GATC 1 cut(s) 785
BstMAI GTCTC 3 cut(s) 106, 507, 635
BstMBI GATC 1 cut(s) 782
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 2 cut(s) 198, 579
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 5 cut(s) 60, 61, 196, 577, 1011
BstSFI CTRYAG 2 cut(s) 645, 879
BstUI CGCG 2 cut(s) 72, 1069
BstV1I GCAGC 2 cut(s) 893, 967
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 2 cut(s) 15, 33
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 5 cut(s) 370, 488, 553, 873, 1029
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 31, 685
CfoI GCGC 2 cut(s) 486, 1071
Cfr13I GGNCC 1 cut(s) 378
Cfr9I CCCGGG 1 cut(s) 61
CseI GACGC 2 cut(s) 233, 1021
Csp6I GTAC 3 cut(s) 276, 524, 597
CviAII CATG 5 cut(s) 7, 136, 535, 605, 845
CviQI GTAC 3 cut(s) 276, 524, 597
DdeI CTNAG 3 cut(s) 203, 823, 1036
DpnI GATC 1 cut(s) 784
DpnII GATC 1 cut(s) 782
DraI TTTAAA 1 cut(s) 951
EaeI YGGCCR 1 cut(s) 31
Eco130I CCWWGG 4 cut(s) 474, 492, 534, 1052
Eco31I GGTCTC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 378
Eco72I CACGTG 1 cut(s) 676
Eco88I CYCGRG 2 cut(s) 61, 564
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoRII CCWGG 2 cut(s) 196, 577
EcoT14I CCWWGG 4 cut(s) 474, 492, 534, 1052
ErhI CCWWGG 4 cut(s) 474, 492, 534, 1052
FaeI CATG 5 cut(s) 10, 139, 538, 608, 848
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FatI CATG 5 cut(s) 6, 135, 534, 604, 844
Fnu4HI GCNGC 2 cut(s) 882, 981
FokI GGATG 5 cut(s) 377, 475, 540, 880, 1036
Fsp4HI GCNGC 2 cut(s) 882, 981
FspBI CTAG 4 cut(s) 132, 684, 734, 989
GlaI GCGC 2 cut(s) 485, 1070
GluI GCNGC 2 cut(s) 882, 981
GsuI CTGGAG 2 cut(s) 423, 489
HaeIII GGCC 2 cut(s) 15, 33
HapII CCGG 4 cut(s) 62, 381, 885, 1012
HgaI GACGC 2 cut(s) 233, 1021
HhaI GCGC 2 cut(s) 486, 1071
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 5 cut(s) 10, 139, 538, 608, 848
Hin6I GCGC 2 cut(s) 484, 1069
HinP1I GCGC 2 cut(s) 484, 1069
HincII GTYRAC 2 cut(s) 322, 901
HindII GTYRAC 2 cut(s) 322, 901
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 1 cut(s) 985
HpaII CCGG 4 cut(s) 62, 381, 885, 1012
HphI GGTGA 3 cut(s) 458, 626, 654
Hpy166II GTNNAC 4 cut(s) 174, 322, 662, 901
Hpy188I TCNGA 4 cut(s) 86, 787, 826, 967
Hpy188III TCNNGA 5 cut(s) 155, 381, 440, 506, 989
Hpy8I GTNNAC 4 cut(s) 174, 322, 662, 901
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 5 cut(s) 355, 443, 675, 805, 1021
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 4 cut(s) 48, 232, 553, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 203, 823, 1036
HpySE526I ACGT 1 cut(s) 675
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 5 cut(s) 10, 139, 538, 608, 848
HspAI GCGC 2 cut(s) 484, 1069
Kpn2I TCCGGA 1 cut(s) 380
Kzo9I GATC 1 cut(s) 782
Lsp1109I GCAGC 2 cut(s) 893, 967
LweI GCATC 4 cut(s) 277, 562, 659, 858
MaeI CTAG 4 cut(s) 132, 684, 734, 989
MaeII ACGT 1 cut(s) 675
MalI GATC 1 cut(s) 784
MboI GATC 1 cut(s) 782
MboII GAAGA 6 cut(s) 396, 462, 660, 885, 902, 931
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 3 cut(s) 233, 479, 952
MluNI TGGCCA 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 497, 760
MnlI CCTC 9 cut(s) 31, 258, 267, 444, 447, 706, 708, 741, 991
Mox20I TGGCCA 1 cut(s) 33
MroI TCCGGA 1 cut(s) 380
MscI TGGCCA 1 cut(s) 33
MseI TTAA 5 cut(s) 224, 417, 849, 950, 1017
MslI CAYNNNNRTG 2 cut(s) 533, 558
Msp20I TGGCCA 1 cut(s) 33
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 4 cut(s) 62, 381, 885, 1012
MspR9I CCNGG 5 cut(s) 62, 63, 198, 579, 1013
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 2 cut(s) 50, 1053
MvaI CCWGG 2 cut(s) 198, 579
MvnI CGCG 2 cut(s) 72, 1069
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 3 cut(s) 62, 63, 1013
NcoI CCATGG 1 cut(s) 534
NdeII GATC 1 cut(s) 782
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 5 cut(s) 10, 139, 538, 608, 848
NlaIV GGNNCC 2 cut(s) 83, 784
NspI RCATGY 1 cut(s) 848
PaeR7I CTCGAG 1 cut(s) 564
PctI GAATGC 2 cut(s) 50, 1053
PfeI GAWTC 1 cut(s) 985
PflFI GACNNNGTC 1 cut(s) 961
PflMI CCANNNNNTGG 2 cut(s) 512, 610
PkrI GCNGC 2 cut(s) 883, 982
PmaCI CACGTG 1 cut(s) 676
PmlI CACGTG 1 cut(s) 676
Ppu21I YACGTR 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 196, 577
PspCI CACGTG 1 cut(s) 676
PspGI CCWGG 2 cut(s) 196, 577
PspN4I GGNNCC 2 cut(s) 83, 784
PspPI GGNCC 1 cut(s) 378
PspXI VCTCGAGB 1 cut(s) 564
PstI CTGCAG 1 cut(s) 883
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 961
RsaI GTAC 3 cut(s) 277, 525, 598
RsaNI GTAC 3 cut(s) 276, 524, 597
RseI CAYNNNNRTG 2 cut(s) 533, 558
SaqAI TTAA 5 cut(s) 224, 417, 849, 950, 1017
SatI GCNGC 2 cut(s) 882, 981
Sau3AI GATC 1 cut(s) 782
Sau96I GGNCC 1 cut(s) 378
ScrFI CCNGG 5 cut(s) 62, 63, 198, 579, 1013
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 4 cut(s) 277, 562, 659, 858
SfcI CTRYAG 2 cut(s) 645, 879
Sfr274I CTCGAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 564
SmaI CCCGGG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 533, 558
SmlI CTYRAG 3 cut(s) 109, 416, 564
SmoI CTYRAG 3 cut(s) 109, 416, 564
Sse9I AATT 3 cut(s) 233, 479, 952
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 399
SspMI CTAG 4 cut(s) 132, 684, 734, 989
StyD4I CCNGG 5 cut(s) 60, 61, 196, 577, 1011
StyI CCWWGG 4 cut(s) 474, 492, 534, 1052
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 678
TaqI TCGA 3 cut(s) 121, 565, 956
TasI AATT 3 cut(s) 233, 479, 952
TatI WGTACW 2 cut(s) 275, 596
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 5 cut(s) 224, 417, 849, 950, 1017
Tru9I TTAA 5 cut(s) 224, 417, 849, 950, 1017
TseI GCWGC 2 cut(s) 881, 980
TspDTI ATGAA 7 cut(s) 23, 174, 477, 587, 633, 941, 1040
TspGWI ACGGA 1 cut(s) 947
TspMI CCCGGG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 961
Van91I CCANNNNNTGG 2 cut(s) 512, 610
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 702
XapI RAATTY 1 cut(s) 952
XbaI TCTAGA 1 cut(s) 988
XceI RCATGY 1 cut(s) 848
XcmI CCANNNNNNNNNTGG 3 cut(s) 304, 495, 513
XhoI CTCGAG 1 cut(s) 564
XmaI CCCGGG 1 cut(s) 61
XspI CTAG 4 cut(s) 132, 684, 734, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.