RLG00000034865

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000683
Physical Location & Seq
Reverse (-)
56236538 .. 56245711
9174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034865

Sequence Viewer

Length: 1179 bp
ATGCTTGAATTGTTTACTTCTGTTTTTGCTGAAAATTTGTATTTGACCGGAAAAAAAAATGTTTATGTCGCAGCTGTGTGTTGCTTTTCACGAATCATCATGGACCTGCTTAACCTACCATTTAAAGTTGGACAGGACATAGAATCGAGATCCTTCCTGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAGCTGTCGTGTGCTTTGGAATATTATGACTTTCCAGATGAAAAAATAACTTGGGACAAGATATATCAAAACAACCCTGCTGATGGTAAAAGGACAAGAAAGAGGAAGACATTGATGATGCGTCCTCCCTTTCCTCCTATCTATCGTGAAAGTAAAAGGCCTGATGTCAATACCATATTGGAAGTGATAGTTATTGTCAATGATGCCTGGAAAGTAGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAACAGTGAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGACGTATGAGGCTTCTTACAAGGACCTGCGCTCATCCTTGGATTGGTCTCTAGAATATGGATGGACAGTACCTACACCCAAGGAGAGAGAAAATGGGCATCCTTGTGTTCAAGTAATTAAGCCTGATAATCAAGGAGACATTCCAAGCGTGCTGGCCCAAACTGTAGGTGATGGAAGAAGAGATGTACAGGCAATTGCTGGTGCAGATCAATCTTTAGCAGCAAAGGACTTAGCAGCAAAGGACCCAGCCACTGCAGAAACAAATATGGAGTCTGATGTAGCAGATAGCCTCTTTGGGAAGACGAGTTGCTCAGATAGTGGTTCAAGTTCGCATATGAAAGATGCATTAAATAAAATGGGGGGAACTGCAACTAGGATAGACATAGTTGATAACGATAGGTCCTTGAAGAAGATGAAAACTGACGAAGGCATAAGATTGAATTCGATGAGCTCTGATACATTAGAAGCTGCAATTTTGGACTTGGAGGAACTTGTAAACCGGGTTAAATGGATGAAAGGTATGTTGGAGACTGGAATGCCTTTGACAGGTGCCATGCGCCCCCATTGGAAATTTCTTGGAAATCATACCGCGTCCACGCCAAGTGAAGGTTTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

393

Amino Acids

43.89

Weight (kDa)

5.6

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 44 - 118 2e-08 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 114, 594
AccB1I GGYRCC 1 cut(s) 1109
AccII CGCG 1 cut(s) 1151
AciI CCGC 1 cut(s) 1149
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 3 cut(s) 34, 1000, 1130
AfaI GTAC 2 cut(s) 630, 747
AfiI CCNNNNNNNGG 5 cut(s) 302, 539, 603, 1106, 1166
AgsI TTSAA 6 cut(s) 8, 554, 671, 885, 967, 1000
AjiI CACGTC 1 cut(s) 530
AjnI CCWGG 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AluBI AGCT 4 cut(s) 74, 223, 1011, 1028
AluI AGCT 4 cut(s) 74, 223, 1011, 1028
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 4 cut(s) 554, 612, 690, 1082
AlwI GGATC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 2 cut(s) 377, 714
ApeKI GCWGC 4 cut(s) 71, 779, 794, 1028
ApoI RAATTY 3 cut(s) 34, 1000, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
Asp700I GAANNNNTTC 1 cut(s) 1170
AspLEI GCGC 2 cut(s) 591, 1119
AspS9I GGNCC 5 cut(s) 103, 583, 715, 802, 960
AsuC2I CCSGG 1 cut(s) 1061
AsuHPI GGTGA 2 cut(s) 554, 740
AvaII GGWCC 4 cut(s) 103, 583, 802, 960
BanI GGYRCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 1013
BbsI GAAGAC 2 cut(s) 332, 866
Bbv12I GWGCWC 1 cut(s) 1013
BbvI GCAGC 4 cut(s) 83, 791, 806, 1015
BccI CCATC 4 cut(s) 296, 455, 615, 725
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 1 cut(s) 1061
BcoDI GTCTC 4 cut(s) 554, 612, 690, 1082
BfaI CTAG 3 cut(s) 611, 933, 1177
BfmI CTRYAG 2 cut(s) 723, 813
BfuAI ACCTGC 2 cut(s) 114, 594
BisI GCNGC 4 cut(s) 72, 780, 795, 1029
BlsI GCNGC 4 cut(s) 73, 781, 796, 1030
Bme1390I CCNGG 2 cut(s) 427, 1061
Bme18I GGWCC 4 cut(s) 103, 583, 802, 960
BmgBI CACGTC 1 cut(s) 530
BmgT120I GGNCC 5 cut(s) 103, 583, 715, 802, 960
BmiI GGNNCC 3 cut(s) 182, 804, 1111
BmrFI CCNGG 2 cut(s) 427, 1061
BmsI GCATC 4 cut(s) 327, 412, 667, 892
BpiI GAAGAC 2 cut(s) 332, 866
BpmI CTGGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 1061
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 597, 639
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 429, 459
Bsc4I CCNNNNNNNGG 5 cut(s) 302, 539, 603, 1106, 1166
Bse1I ACTGG 1 cut(s) 1096
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 597, 639
BseGI GGATG 6 cut(s) 466, 508, 593, 626, 658, 1077
BseLI CCNNNNNNNGG 5 cut(s) 302, 539, 603, 1106, 1166
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 1 cut(s) 1096
BseXI GCAGC 4 cut(s) 83, 791, 806, 1015
BseYI CCCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 1151
BshFI GGCC 2 cut(s) 379, 716
BshNI GGYRCC 1 cut(s) 1109
BsiHKAI GWGCWC 1 cut(s) 1013
BsiSI CCGG 2 cut(s) 48, 1060
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 5 cut(s) 302, 539, 603, 1106, 1166
BsmAI GTCTC 4 cut(s) 554, 612, 690, 1082
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 2 cut(s) 379, 716
Bso31I GGTCTC 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 1013
Bsp1407I TGTACA 1 cut(s) 745
Bsp143I GATC 2 cut(s) 149, 766
BspACI CCGC 1 cut(s) 1149
BspANI GGCC 2 cut(s) 379, 716
BspCNI CTCAG 1 cut(s) 884
BspFNI CGCG 1 cut(s) 1151
BspLI GGNNCC 3 cut(s) 182, 804, 1111
BspMAI CTGCAG 1 cut(s) 817
BspMI ACCTGC 2 cut(s) 114, 594
BspPI GGATC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 1109
BspTNI GGTCTC 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 745
BsrI ACTGG 1 cut(s) 1096
BssECI CCNNGG 2 cut(s) 597, 639
BssMI GATC 2 cut(s) 149, 766
BssT1I CCWWGG 2 cut(s) 597, 639
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 3 cut(s) 511, 628, 724
Bst6I CTCTTC 1 cut(s) 733
BstAUI TGTACA 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 710, 714
BstDEI CTNAG 2 cut(s) 790, 871
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 6 cut(s) 466, 508, 593, 626, 658, 1077
BstFNI CGCG 1 cut(s) 1151
BstHHI GCGC 2 cut(s) 591, 1119
BstKTI GATC 2 cut(s) 152, 769
BstMAI GTCTC 4 cut(s) 554, 612, 690, 1082
BstMBI GATC 2 cut(s) 149, 766
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 425, 1059
BstSFI CTRYAG 2 cut(s) 723, 813
BstUI CGCG 1 cut(s) 1151
BstV1I GCAGC 4 cut(s) 83, 791, 806, 1015
BstV2I GAAGAC 2 cut(s) 332, 866
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 2 cut(s) 379, 716
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 6 cut(s) 466, 508, 593, 626, 658, 1077
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 2 cut(s) 516, 810
BveI ACCTGC 2 cut(s) 114, 594
Cac8I GCNNGC 2 cut(s) 710, 714
CaiI CAGNNNCTG 1 cut(s) 812
CfoI GCGC 2 cut(s) 591, 1119
Cfr13I GGNCC 5 cut(s) 103, 583, 715, 802, 960
CseI GACGC 2 cut(s) 329, 1140
Csp6I GTAC 2 cut(s) 629, 746
CviAII CATG 2 cut(s) 100, 1114
CviQI GTAC 2 cut(s) 629, 746
DdeI CTNAG 2 cut(s) 790, 871
DpnI GATC 2 cut(s) 151, 768
DpnII GATC 2 cut(s) 149, 766
DraI TTTAAA 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Ecl136II GAGCTC 1 cut(s) 1011
Eco130I CCWWGG 2 cut(s) 597, 639
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 4 cut(s) 103, 583, 802, 960
Eco53kI GAGCTC 1 cut(s) 1011
EcoICRI GAGCTC 1 cut(s) 1011
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoO109I RGGNCCY 3 cut(s) 583, 802, 960
EcoRI GAATTC 1 cut(s) 1000
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 597, 639
EcoT22I ATGCAT 1 cut(s) 907
EcoT38I GRGCYC 1 cut(s) 1013
ErhI CCWWGG 2 cut(s) 597, 639
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 2 cut(s) 103, 1117
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 99, 1113
FauNDI CATATG 1 cut(s) 894
Fnu4HI GCNGC 4 cut(s) 72, 780, 795, 1029
FokI GGATG 6 cut(s) 473, 515, 580, 633, 645, 1084
FriOI GRGCYC 1 cut(s) 1013
Fsp4HI GCNGC 4 cut(s) 72, 780, 795, 1029
FspBI CTAG 3 cut(s) 611, 933, 1177
GlaI GCGC 2 cut(s) 590, 1118
GluI GCNGC 4 cut(s) 72, 780, 795, 1029
GsaI CCCAGC 1 cut(s) 809
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 2 cut(s) 379, 716
HapII CCGG 2 cut(s) 48, 1060
HgaI GACGC 2 cut(s) 329, 1140
HhaI GCGC 2 cut(s) 591, 1119
Hin1II CATG 2 cut(s) 103, 1117
Hin6I GCGC 2 cut(s) 589, 1117
HinP1I GCGC 2 cut(s) 589, 1117
HinfI GANTC 3 cut(s) 93, 143, 830
HpaII CCGG 2 cut(s) 48, 1060
HphI GGTGA 2 cut(s) 554, 740
Hpy166II GTNNAC 3 cut(s) 15, 1057, 1155
Hpy188I TCNGA 4 cut(s) 185, 835, 874, 1015
Hpy188III TCNNGA 7 cut(s) 90, 147, 157, 254, 365, 477, 611
Hpy8I GTNNAC 3 cut(s) 15, 1057, 1155
HpyAV CCTTC 7 cut(s) 163, 451, 508, 539, 548, 980, 1160
HpyCH4III ACNGT 3 cut(s) 511, 628, 724
HpyCH4IV ACGT 2 cut(s) 529, 563
HpyCH4V TGCA 5 cut(s) 764, 815, 905, 929, 1031
HpyF3I CTNAG 2 cut(s) 790, 871
HpySE526I ACGT 2 cut(s) 529, 563
Hsp92II CATG 2 cut(s) 103, 1117
HspAI GCGC 2 cut(s) 589, 1117
Kzo9I GATC 2 cut(s) 149, 766
Lsp1109I GCAGC 4 cut(s) 83, 791, 806, 1015
LweI GCATC 4 cut(s) 327, 412, 667, 892
MaeI CTAG 3 cut(s) 611, 933, 1177
MaeII ACGT 2 cut(s) 529, 563
MalI GATC 2 cut(s) 151, 768
MboI GATC 2 cut(s) 149, 766
MboII GAAGA 6 cut(s) 337, 747, 750, 871, 979, 982
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 1013
MluCI AATT 7 cut(s) 8, 34, 675, 753, 1000, 1032, 1130
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 2 cut(s) 109, 1065
MnlI CCTC 7 cut(s) 315, 354, 363, 543, 562, 860, 1039
Mph1103I ATGCAT 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 1170
MseI TTAA 5 cut(s) 111, 123, 678, 908, 1065
MslI CAYNNNNRTG 1 cut(s) 663
MspA1I CMGCKG 2 cut(s) 74, 223
MspI CCGG 2 cut(s) 48, 1060
MspR9I CCNGG 2 cut(s) 427, 1061
MunI CAATTG 1 cut(s) 753
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 1 cut(s) 1151
NciI CCSGG 1 cut(s) 1061
NdeI CATATG 1 cut(s) 894
NdeII GATC 2 cut(s) 149, 766
NlaIII CATG 2 cut(s) 103, 1117
NlaIV GGNNCC 3 cut(s) 182, 804, 1111
NsiI ATGCAT 1 cut(s) 907
PceI AGGCCT 1 cut(s) 379
PctI GAATGC 1 cut(s) 1101
PdmI GAANNNNTTC 1 cut(s) 1170
PfeI GAWTC 2 cut(s) 93, 143
PkrI GCNGC 4 cut(s) 73, 781, 796, 1030
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
PpuMI RGGWCCY 3 cut(s) 583, 802, 960
Psp124BI GAGCTC 1 cut(s) 1013
Psp5II RGGWCCY 3 cut(s) 583, 802, 960
Psp6I CCWGG 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 805
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 3 cut(s) 182, 804, 1111
PspPI GGNCC 5 cut(s) 103, 583, 715, 802, 960
PspPPI RGGWCCY 3 cut(s) 583, 802, 960
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 1 cut(s) 149
PvuII CAGCTG 2 cut(s) 74, 223
RsaI GTAC 2 cut(s) 630, 747
RsaNI GTAC 2 cut(s) 629, 746
RseI CAYNNNNRTG 1 cut(s) 663
SacI GAGCTC 1 cut(s) 1013
SaqAI TTAA 5 cut(s) 111, 123, 678, 908, 1065
SatI GCNGC 4 cut(s) 72, 780, 795, 1029
Sau3AI GATC 2 cut(s) 149, 766
Sau96I GGNCC 5 cut(s) 103, 583, 715, 802, 960
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 2 cut(s) 427, 1061
SduI GDGCHC 1 cut(s) 1013
SfaNI GCATC 4 cut(s) 327, 412, 667, 892
SfcI CTRYAG 2 cut(s) 723, 813
SinI GGWCC 4 cut(s) 103, 583, 802, 960
SmiMI CAYNNNNRTG 1 cut(s) 663
Sse9I AATT 7 cut(s) 8, 34, 675, 753, 1000, 1032, 1130
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 1149
SspI AATATT 1 cut(s) 242
SspMI CTAG 3 cut(s) 611, 933, 1177
SstI GAGCTC 1 cut(s) 1013
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 425, 1059
StyI CCWWGG 2 cut(s) 597, 639
TaaI ACNGT 3 cut(s) 511, 628, 724
TaiI ACGT 2 cut(s) 532, 566
TaqI TCGA 2 cut(s) 146, 1004
TasI AATT 7 cut(s) 8, 34, 675, 753, 1000, 1032, 1130
TatI WGTACW 1 cut(s) 745
TfiI GAWTC 2 cut(s) 93, 143
Tru1I TTAA 5 cut(s) 111, 123, 678, 908, 1065
Tru9I TTAA 5 cut(s) 111, 123, 678, 908, 1065
TscAI CASTG 2 cut(s) 516, 817
TseI GCWGC 4 cut(s) 71, 779, 794, 1028
TspDTI ATGAA 5 cut(s) 273, 519, 911, 989, 1088
TspRI CASTG 2 cut(s) 516, 817
VpaK11BI GGWCC 4 cut(s) 103, 583, 802, 960
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 3 cut(s) 34, 1000, 1130
XbaI TCTAGA 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 1170
XspI CTAG 3 cut(s) 611, 933, 1177
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.